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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = TCG
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272265 (20 seq.)
>W131157527
AQSK01000112
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
10829
10753
-
Arg
TCG
[ENA]
¡û
>W131157610
AQSM01000086
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
10216
10140
-
Arg
TCG
[ENA]
¡û
>W131192147
ASKO01000053
Unclassified
Cloacimonetes bacterium SCGC AAA252-M08 KSB1 bacterium SCGC AAA252-M08 [ASKO]
263
339
+
Arg
TCG
[ENA]
¡û
>W131192157
ASKP01000060
Unclassified
Cloacimonetes bacterium SCGC AAA252-L05 KSB1 bacterium SCGC AAA252-L05 [ASKP]
4346
4270
-
Arg
TCG
[ENA]
¡û
>W131192185
ASKQ01000098
Unclassified
Cloacimonetes bacterium SCGC AAA252-O17 KSB1 bacterium SCGC AAA252-O17 [ASKQ]
1297
1373
+
Arg
TCG
[ENA]
¡û
>W131192965
ASNI01000001
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
10392
10316
-
Arg
TCG
[ENA]
¡û
>W131193153
ASNQ01000061
Unclassified
Cloacimonetes bacterium SCGC AAA252-K16 KSB1 bacterium SCGC AAA252-K16 [ASNQ]
256
332
+
Arg
TCG
[ENA]
¡û
>W131193158
ASNR01000019
Unclassified
Cloacimonetes bacterium SCGC AAA252-L13 KSB1 bacterium SCGC AAA252-L13 [ASNR]
5724
5800
+
Arg
TCG
[ENA]
¡û
>W131193201
ASNT01000040
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
10384
10308
-
Arg
TCG
[ENA]
¡û
>W141139682
AWNX01000021
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
10640
10564
-
Arg
TCG
[ENA]
¡û
>WENV170624764
FUWD013186367
[FUWD] metagenome; unknown
1206
1130
-
Arg
TCG
[ENA]
¢þ
>WENV170633040
FUWD013390449
[FUWD] metagenome; unknown
1206
1130
-
Arg
TCG
[ENA]
¢þ
>SRA1025550
SRR035085.37500
454 Sequencing (SRP001806)
401
325
-
Arg
TCG
[SRA]
>SRA1025886
SRR035085.102782
454 Sequencing (SRP001806)
402
326
-
Arg
TCG
[SRA]
>SRA1025972
SRR035085.119514
454 Sequencing (SRP001806)
403
327
-
Arg
TCG
[SRA]
>SRA1031126
SRR035087.377529
454 Sequencing (SRP001808)
274
198
-
Arg
TCG
[SRA]
>SRA1032700
SRR035088.82055
454 Sequencing (SRP001809)
91
15
-
Arg
TCG
[SRA]
>SRA1033378
SRR035088.239777
454 Sequencing (SRP001809)
149
73
-
Arg
TCG
[SRA]
>SRA1048754
SRR035094.241714
454 Sequencing (SRP001815)
32
108
+
Arg
TCG
[SRA]
>SRA1048869
SRR035094.267796
454 Sequencing (SRP001815)
32
108
+
Arg
TCG
[SRA]
Identical group No.272449 (23 seq.)
>WENV181413199
OGCK01038251
[OGCK] hot springs metagenome; hot spring sediment
853
929
+
Arg
TCG
[ENA]
¢þ
>WENV170616588
FUWD012892690
[FUWD] metagenome; unknown
15
91
+
Arg
TCG
[ENA]
¢þ
>WENV170617548
FUWD012929501
[FUWD] metagenome; unknown
109
185
+
Arg
TCG
[ENA]
¢þ
>WENV170620355
FUWD013030264
[FUWD] metagenome; unknown
1996
1920
-
Arg
TCG
[ENA]
¢þ
>WENV170624202
FUWD013177659
[FUWD] metagenome; unknown
348
272
-
Arg
TCG
[ENA]
¢þ
>WENV170625247
FUWD013194035
[FUWD] metagenome; unknown
2626
2702
+
Arg
TCG
[ENA]
¢þ
>WENV170628492
FUWD013247842
[FUWD] metagenome; unknown
1996
1920
-
Arg
TCG
[ENA]
¢þ
>WENV170632485
FUWD013383366
[FUWD] metagenome; unknown
348
272
-
Arg
TCG
[ENA]
¢þ
>WENV170633492
FUWD013396979
[FUWD] metagenome; unknown
2626
2702
+
Arg
TCG
[ENA]
¢þ
>SRA1017972
SRR035082.223176
454 Sequencing (SRP001803)
380
304
-
Arg
TCG
[SRA]
>SRA1018286
SRR035082.269545
454 Sequencing (SRP001803)
15
91
+
Arg
TCG
[SRA]
>SRA1018874
SRR035082.361764
454 Sequencing (SRP001803)
241
165
-
Arg
TCG
[SRA]
>SRA1026645
SRR035085.248989
454 Sequencing (SRP001806)
237
161
-
Arg
TCG
[SRA]
>SRA1029242
SRR035087.96635
454 Sequencing (SRP001808)
294
370
+
Arg
TCG
[SRA]
>SRA1029647
SRR035087.156066
454 Sequencing (SRP001808)
139
63
-
Arg
TCG
[SRA]
>SRA1029823
SRR035087.187552
454 Sequencing (SRP001808)
310
234
-
Arg
TCG
[SRA]
>SRA1034567
SRR035089.124575
454 Sequencing (SRP001810)
148
72
-
Arg
TCG
[SRA]
>SRA1034574
SRR035089.126691
454 Sequencing (SRP001810)
274
350
+
Arg
TCG
[SRA]
>SRA1035940
SRR035089.409818
454 Sequencing (SRP001810)
142
66
-
Arg
TCG
[SRA]
>SRA1048204
SRR035094.128844
454 Sequencing (SRP001815)
243
319
+
Arg
TCG
[SRA]
>SRA1049069
SRR035095.14204
454 Sequencing (SRP001816)
147
223
+
Arg
TCG
[SRA]
>SRA1049559
SRR035095.95725
454 Sequencing (SRP001816)
119
195
+
Arg
TCG
[SRA]
>SRA1050302
SRR035095.234322
454 Sequencing (SRP001816)
377
453
+
Arg
TCG
[SRA]
Identical group No.272772 (8 seq.)
>WENV170608061
FUWD010888068
[FUWD] metagenome; unknown
282
358
+
Arg
TCG
[ENA]
¢þ
>SRA1032461
SRR035088.17532
454 Sequencing (SRP001809)
220
144
-
Arg
TCG
[SRA]
>SRA1032952
SRR035088.138779
454 Sequencing (SRP001809)
221
145
-
Arg
TCG
[SRA]
>SRA1033393
SRR035088.244278
454 Sequencing (SRP001809)
128
52
-
Arg
TCG
[SRA]
>SRA1035642
SRR035089.347394
454 Sequencing (SRP001810)
15
91
+
Arg
TCG
[SRA]
>SRA1035919
SRR035089.403774
454 Sequencing (SRP001810)
306
382
+
Arg
TCG
[SRA]
>SRA1048332
SRR035094.149221
454 Sequencing (SRP001815)
292
216
-
Arg
TCG
[SRA]
>SRA1049794
SRR035095.139692
454 Sequencing (SRP001816)
432
356
-
Arg
TCG
[SRA]
Identical group No.300459 (17 seq.)
>WENV170600779
FUWD010142391
[FUWD] metagenome; unknown
173
97
-
Arg
TCG
[ENA]
¢þ
>WENV170625933
FUWD013209829
[FUWD] metagenome; unknown
290
366
+
Arg
TCG
[ENA]
¢þ
>WENV170634147
FUWD013411312
[FUWD] metagenome; unknown
290
366
+
Arg
TCG
[ENA]
¢þ
>SRA1017823
SRR035082.202976
454 Sequencing (SRP001803)
291
367
+
Arg
TCG
[SRA]
>SRA1019017
SRR035082.386933
454 Sequencing (SRP001803)
232
156
-
Arg
TCG
[SRA]
>SRA1019097
SRR035082.400811
454 Sequencing (SRP001803)
37
113
+
Arg
TCG
[SRA]
>SRA1030137
SRR035087.232565
454 Sequencing (SRP001808)
385
309
-
Arg
TCG
[SRA]
>SRA1041851
SRR035091.304846
454 Sequencing (SRP001812)
229
153
-
Arg
TCG
[SRA]
>SRA1047838
SRR035094.51526
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1047856
SRR035094.56510
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048015
SRR035094.89414
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048247
SRR035094.134307
454 Sequencing (SRP001815)
249
173
-
Arg
TCG
[SRA]
>SRA1048418
SRR035094.169337
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048511
SRR035094.190976
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048593
SRR035094.205125
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048727
SRR035094.235954
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048747
SRR035094.239901
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
Identical group No.324389 (2 seq.)
>W141236193
BAYZ01000157
Unclassified
Candidatus Vecturithrix granuli UASB270 [BAYZ]
26999
26926
-
Arg
TCG
[ENA]
¡û
>SRA1047892
SRR035094.62906
454 Sequencing (SRP001815)
432
356
-
Arg
TCG
[SRA]
Identical group No.415552 (1 seq.)
>SRA1048244
SRR035094.133791
454 Sequencing (SRP001815)
179
105
-
Arg
TCG
[SRA]
Identical group No.612521 (1 seq.)
>SRA1047804
SRR035094.44004
454 Sequencing (SRP001815)
79
7
-
Arg
TCG
[SRA]
Identical group No.654469 (14 seq.)
>WENV170626803
FUWD013229616
[FUWD] metagenome; unknown
3279
3207
-
Arg
TCG
[ENA]
¢þ
>SRA1019337
SRR035082.437284
454 Sequencing (SRP001803)
259
331
+
Arg
TCG
[SRA]
>SRA1034701
SRR035089.155824
454 Sequencing (SRP001810)
520
448
-
Arg
TCG
[SRA]
>SRA1040138
SRR035091.46446
454 Sequencing (SRP001812)
128
200
+
Arg
TCG
[SRA]
>SRA1040597
SRR035091.121076
454 Sequencing (SRP001812)
53
125
+
Arg
TCG
[SRA]
>SRA1040962
SRR035091.175134
454 Sequencing (SRP001812)
81
153
+
Arg
TCG
[SRA]
>SRA1041103
SRR035091.196976
454 Sequencing (SRP001812)
81
153
+
Arg
TCG
[SRA]
>SRA1041682
SRR035091.277877
454 Sequencing (SRP001812)
394
322
-
Arg
TCG
[SRA]
>SRA1041935
SRR035091.316663
454 Sequencing (SRP001812)
81
153
+
Arg
TCG
[SRA]
>SRA1042092
SRR035091.337114
454 Sequencing (SRP001812)
579
507
-
Arg
TCG
[SRA]
>SRA1042561
SRR035091.409124
454 Sequencing (SRP001812)
144
72
-
Arg
TCG
[SRA]
>SRA1047860
SRR035094.56725
454 Sequencing (SRP001815)
200
128
-
Arg
TCG
[SRA]
>SRA1048113
SRR035094.112105
454 Sequencing (SRP001815)
355
427
+
Arg
TCG
[SRA]
>SRA1048225
SRR035094.130390
454 Sequencing (SRP001815)
199
127
-
Arg
TCG
[SRA]
Identical group No.654644 (3 seq.)
>SRA1036613
SRR035089.562762
454 Sequencing (SRP001810)
326
252
-
Arg
TCG
[SRA]
>SRA1044405
SRR035092.274748
454 Sequencing (SRP001813)
46
120
+
Arg
TCG
[SRA]
>SRA1048633
SRR035094.213243
454 Sequencing (SRP001815)
358
432
+
Arg
TCG
[SRA]
Identical group No.654666 (14 seq.)
>WENV170598273
FUWD010030793
[FUWD] metagenome; unknown
425
352
-
Arg
TCG
[ENA]
¢þ
>WENV170627254
FUWD013232414
[FUWD] metagenome; unknown
16614
16687
+
Arg
TCG
[ENA]
¢þ
>SRA1029857
SRR035087.192877
454 Sequencing (SRP001808)
414
341
-
Arg
TCG
[SRA]
>SRA1035435
SRR035089.303245
454 Sequencing (SRP001810)
239
166
-
Arg
TCG
[SRA]
>SRA1040090
SRR035091.37284
454 Sequencing (SRP001812)
166
93
-
Arg
TCG
[SRA]
>SRA1041338
SRR035091.229546
454 Sequencing (SRP001812)
207
134
-
Arg
TCG
[SRA]
>SRA1042052
SRR035091.332692
454 Sequencing (SRP001812)
282
209
-
Arg
TCG
[SRA]
>SRA1047898
SRR035094.63993
454 Sequencing (SRP001815)
154
81
-
Arg
TCG
[SRA]
>SRA1048596
SRR035094.205672
454 Sequencing (SRP001815)
128
55
-
Arg
TCG
[SRA]
>SRA1049487
SRR035095.85304
454 Sequencing (SRP001816)
129
202
+
Arg
TCG
[SRA]
>SRA1049506
SRR035095.87814
454 Sequencing (SRP001816)
31
104
+
Arg
TCG
[SRA]
>SRA1049682
SRR035095.118550
454 Sequencing (SRP001816)
253
180
-
Arg
TCG
[SRA]
>SRA1049927
SRR035095.162111
454 Sequencing (SRP001816)
122
49
-
Arg
TCG
[SRA]
>SRA1050179
SRR035095.206778
454 Sequencing (SRP001816)
252
325
+
Arg
TCG
[SRA]
Identical group No.710592 (3 seq.)
>WENV170603285
FUWD010298744
[FUWD] metagenome; unknown
807
879
+
Arg
TCG
[ENA]
¢þ
>SRA1045026
SRR035092.394809
454 Sequencing (SRP001813)
95
23
-
Arg
TCG
[SRA]
>SRA1048432
SRR035094.172619
454 Sequencing (SRP001815)
326
252
-
Arg
TCG
[SRA]
Identical group No.711114 (5 seq.)
>WENV170612685
FUWD012657873
[FUWD] metagenome; unknown
295
367
+
Arg
TCG
[ENA]
¢þ
>SRA1042155
SRR035091.347302
454 Sequencing (SRP001812)
82
10
-
Arg
TCG
[SRA]
>SRA1045050
SRR035092.400076
454 Sequencing (SRP001813)
297
369
+
Arg
TCG
[SRA]
>SRA1047849
SRR035094.54558
454 Sequencing (SRP001815)
55
127
+
Arg
TCG
[SRA]
>SRA1048076
SRR035094.104130
454 Sequencing (SRP001815)
55
127
+
Arg
TCG
[SRA]
Identical group No.711357 (4 seq.)
>WENV170621634
FUWD013066713
[FUWD] metagenome; unknown
2937
2865
-
Arg
TCG
[ENA]
¢þ
>WENV170629823
FUWD013282672
[FUWD] metagenome; unknown
2937
2865
-
Arg
TCG
[ENA]
¢þ
>SRA1043811
SRR035092.179091
454 Sequencing (SRP001813)
235
163
-
Arg
TCG
[SRA]
>SRA1048382
SRR035094.161915
454 Sequencing (SRP001815)
466
538
+
Arg
TCG
[SRA]
Identical group No.751723 (1 seq.)
>SRA1048752
SRR035094.240920
454 Sequencing (SRP001815)
345
271
-
Arg
TCG
[SRA]
Identical group No.751734 (1 seq.)
>SRA1048890
SRR035094.277368
454 Sequencing (SRP001815)
214
287
+
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK