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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = TGA
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21416 (6 seq.)
>WENV170607899
FUWD010869408
[FUWD] metagenome; unknown
374
465
+
Ser
TGA
[ENA]
¢þ
>SRA1029297
SRR035087.104545
454 Sequencing (SRP001808)
11
102
+
Ser
TGA
[SRA]
>SRA1029386
SRR035087.119820
454 Sequencing (SRP001808)
295
204
-
Ser
TGA
[SRA]
>SRA1044477
SRR035092.286144
454 Sequencing (SRP001813)
308
399
+
Ser
TGA
[SRA]
>SRA1048160
SRR035094.120113
454 Sequencing (SRP001815)
122
212
+
Ser
TGA
[SRA]
>SRA1048831
SRR035094.259234
454 Sequencing (SRP001815)
130
39
-
Ser
TGA
[SRA]
Identical group No.28080 (1 seq.)
>SRA1048873
SRR035094.269673
454 Sequencing (SRP001815)
197
288
+
Ser
TGA
[SRA]
Identical group No.45857 (3 seq.)
>SRA1026835
SRR035085.306660
454 Sequencing (SRP001806)
145
57
-
Ser
TGA
[SRA]
>SRA1048227
SRR035094.130419
454 Sequencing (SRP001815)
183
95
-
Ser
TGA
[SRA]
>SRA1048628
SRR035094.211885
454 Sequencing (SRP001815)
183
95
-
Ser
TGA
[SRA]
Identical group No.55339 (3 seq.)
>WENV170974196
MTKY01055395
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
9077
9166
+
Ser
TGA
[ENA]
¢þ
>SRA1047933
SRR035094.70097
454 Sequencing (SRP001815)
98
187
+
Ser
TGA
[SRA]
>SRA1048118
SRR035094.112961
454 Sequencing (SRP001815)
98
187
+
Ser
TGA
[SRA]
Identical group No.57934 (5 seq.)
>WENV170607993
FUWD010880023
[FUWD] metagenome; unknown
155
242
+
Ser
TGA
[ENA]
¢þ
>WENV170623334
FUWD013145916
[FUWD] metagenome; unknown
711
798
+
Ser
TGA
[ENA]
¢þ
>WENV170631597
FUWD013357861
[FUWD] metagenome; unknown
711
798
+
Ser
TGA
[ENA]
¢þ
>SRA1033301
SRR035088.219611
454 Sequencing (SRP001809)
77
166
+
Ser
TGA
[SRA]
>SRA1048455
SRR035094.176815
454 Sequencing (SRP001815)
165
252
+
Ser
TGA
[SRA]
Identical group No.57937 (3 seq.)
>WENV170608205
FUWD010902190
[FUWD] metagenome; unknown
89
2
-
Ser
TGA
[ENA]
¢þ
>SRA1047903
SRR035094.64800
454 Sequencing (SRP001815)
100
11
-
Ser
TGA
[SRA]
>SRA1049720
SRR035095.125539
454 Sequencing (SRP001816)
196
283
+
Ser
TGA
[SRA]
Identical group No.66801 (1 seq.)
>SRA1047682
SRR035094.19124
454 Sequencing (SRP001815)
163
249
+
Ser
TGA
[SRA]
Identical group No.66803 (1 seq.)
>SRA1047816
SRR035094.46417
454 Sequencing (SRP001815)
231
320
+
Ser
TGA
[SRA]
Identical group No.66804 (1 seq.)
>SRA1047883
SRR035094.60945
454 Sequencing (SRP001815)
437
350
-
Ser
TGA
[SRA]
Identical group No.66810 (1 seq.)
>SRA1048294
SRR035094.141122
454 Sequencing (SRP001815)
160
71
-
Ser
TGA
[SRA]
Identical group No.66816 (1 seq.)
>SRA1048864
SRR035094.266289
454 Sequencing (SRP001815)
250
162
-
Ser
TGA
[SRA]
Identical group No.66819 (1 seq.)
>SRA1048639
SRR035094.214244
454 Sequencing (SRP001815)
120
30
-
Ser
TGA
[SRA]
Identical group No.83989 (1 seq.)
>SRA1047737
SRR035094.32071
454 Sequencing (SRP001815)
81
168
+
Ser
TGA
[SRA]
Identical group No.87042 (8 seq.)
>W131193753
ASOZ01000011
Atribacterota
Atribacteria bacterium JGI 0000014-F07 OP9 bacterium JGI 0000014-F07 [ASOZ]
4373
4286
-
Ser
TGA
[ENA]
¡û
>WENV170602334
FUWD010227344
[FUWD] metagenome; unknown
662
749
+
Ser
TGA
[ENA]
¢þ
>SRA1026641
SRR035085.246914
454 Sequencing (SRP001806)
177
90
-
Ser
TGA
[SRA]
>SRA1029421
SRR035087.124831
454 Sequencing (SRP001808)
99
12
-
Ser
TGA
[SRA]
>SRA1048242
SRR035094.133372
454 Sequencing (SRP001815)
91
178
+
Ser
TGA
[SRA]
>SRA1048422
SRR035094.169752
454 Sequencing (SRP001815)
91
178
+
Ser
TGA
[SRA]
>W1510076774
CDPL01000020
Atribacterota
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5546
5633
+
Ser
TGA
[ENA]
¡û
>W1510076786
CDPL01000121
Atribacterota
Atribacteria bacterium JGI 0000014-F07 [CDPL]
1769
1682
-
Ser
TGA
[ENA]
¡û
Identical group No.87094 (14 seq.)
>C171072569
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
695337
695423
+
Ser
TGA
-
¡û
>WENV170614935
FUWD012844721
[FUWD] metagenome; unknown
5246
5332
+
Ser
TGA
[ENA]
¢þ
>SRA1028253
SRR035086.285748
454 Sequencing (SRP001807)
28
114
+
Ser
TGA
[SRA]
>SRA1028730
SRR035086.412244
454 Sequencing (SRP001807)
135
49
-
Ser
TGA
[SRA]
>SRA1032279
SRR035087.594065
454 Sequencing (SRP001808)
96
10
-
Ser
TGA
[SRA]
>SRA1032544
SRR035088.42863
454 Sequencing (SRP001809)
120
34
-
Ser
TGA
[SRA]
>SRA1036195
SRR035089.467204
454 Sequencing (SRP001810)
228
142
-
Ser
TGA
[SRA]
>SRA1048210
SRR035094.129218
454 Sequencing (SRP001815)
175
89
-
Ser
TGA
[SRA]
>SRA1048256
SRR035094.135541
454 Sequencing (SRP001815)
53
139
+
Ser
TGA
[SRA]
>SRA1051800
SRR035098.78842
454 Sequencing (SRP001819)
115
29
-
Ser
TGA
[SRA]
>SRA1052111
SRR035098.143326
454 Sequencing (SRP001819)
333
247
-
Ser
TGA
[SRA]
>SRA1052894
SRR035098.295545
454 Sequencing (SRP001819)
218
132
-
Ser
TGA
[SRA]
>SRA1053224
SRR035098.364226
454 Sequencing (SRP001819)
100
14
-
Ser
TGA
[SRA]
>SRA1053700
SRR035098.470009
454 Sequencing (SRP001819)
50
136
+
Ser
TGA
[SRA]
Identical group No.107010 (1 seq.)
>SRA1048117
SRR035094.112755
454 Sequencing (SRP001815)
330
242
-
Ser
TGA
[SRA]
Identical group No.107015 (1 seq.)
>SRA1048388
SRR035094.162376
454 Sequencing (SRP001815)
441
527
+
Ser
TGA
[SRA]
Identical group No.153915 (15 seq.)
>WENV183512218
OMKS01000147
[OMKS] sediment metagenome; hot spring sediment
41868
41953
+
Ser
TGA
[ENA]
¢þ
>WENV183513112
OMKS01002776
[OMKS] sediment metagenome; hot spring sediment
4514
4429
-
Ser
TGA
[ENA]
¢þ
>WENV170619645
FUWD013018439
[FUWD] metagenome; unknown
1375
1460
+
Ser
TGA
[ENA]
¢þ
>WENV170619689
FUWD013019112
[FUWD] metagenome; unknown
161
246
+
Ser
TGA
[ENA]
¢þ
>WENV170624190
FUWD013177246
[FUWD] metagenome; unknown
280
195
-
Ser
TGA
[ENA]
¢þ
>WENV170627752
FUWD013236893
[FUWD] metagenome; unknown
1375
1460
+
Ser
TGA
[ENA]
¢þ
>WENV170632473
FUWD013383052
[FUWD] metagenome; unknown
280
195
-
Ser
TGA
[ENA]
¢þ
>SRA1031632
SRR035087.462537
454 Sequencing (SRP001808)
6
91
+
Ser
TGA
[SRA]
>SRA1032138
SRR035087.560450
454 Sequencing (SRP001808)
366
281
-
Ser
TGA
[SRA]
>SRA1036265
SRR035089.483055
454 Sequencing (SRP001810)
352
267
-
Ser
TGA
[SRA]
>SRA1036755
SRR035089.607301
454 Sequencing (SRP001810)
18
103
+
Ser
TGA
[SRA]
>SRA1047809
SRR035094.45770
454 Sequencing (SRP001815)
250
165
-
Ser
TGA
[SRA]
>SRA1048686
SRR035094.227746
454 Sequencing (SRP001815)
201
286
+
Ser
TGA
[SRA]
>SRA1050060
SRR035095.185315
454 Sequencing (SRP001816)
433
348
-
Ser
TGA
[SRA]
>SRA1050345
SRR035095.241610
454 Sequencing (SRP001816)
130
215
+
Ser
TGA
[SRA]
Identical group No.165815 (10 seq.)
>WENV170624310
FUWD013179602
[FUWD] metagenome; unknown
2549
2634
+
Ser
TGA
[ENA]
¢þ
>WENV170632597
FUWD013384921
[FUWD] metagenome; unknown
2549
2634
+
Ser
TGA
[ENA]
¢þ
>SRA1018590
SRR035082.316718
454 Sequencing (SRP001803)
153
68
-
Ser
TGA
[SRA]
>SRA1040960
SRR035091.175064
454 Sequencing (SRP001812)
241
326
+
Ser
TGA
[SRA]
>SRA1041428
SRR035091.240508
454 Sequencing (SRP001812)
384
299
-
Ser
TGA
[SRA]
>SRA1042176
SRR035091.350118
454 Sequencing (SRP001812)
96
11
-
Ser
TGA
[SRA]
>SRA1042296
SRR035091.369113
454 Sequencing (SRP001812)
123
38
-
Ser
TGA
[SRA]
>SRA1043320
SRR035092.95911
454 Sequencing (SRP001813)
280
195
-
Ser
TGA
[SRA]
>SRA1048497
SRR035094.187192
454 Sequencing (SRP001815)
281
196
-
Ser
TGA
[SRA]
>SRA1048528
SRR035094.193742
454 Sequencing (SRP001815)
105
20
-
Ser
TGA
[SRA]
Identical group No.174302 (1 seq.)
>SRA1048253
SRR035094.135351
454 Sequencing (SRP001815)
64
149
+
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK