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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = TTG
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.415575 (1 seq.)
>SRA1048655
SRR035094.217436
454 Sequencing (SRP001815)
420
345
-
Gln
TTG
[SRA]
Identical group No.415584 (1 seq.)
>SRA1048767
SRR035094.243624
454 Sequencing (SRP001815)
42
118
+
Gln
TTG
[SRA]
Identical group No.612518 (1 seq.)
>SRA1047766
SRR035094.37140
454 Sequencing (SRP001815)
144
69
-
Gln
TTG
[SRA]
Identical group No.612534 (1 seq.)
>SRA1048004
SRR035094.86721
454 Sequencing (SRP001815)
456
381
-
Gln
TTG
[SRA]
Identical group No.654427 (5 seq.)
>WENV170624899
FUWD013188546
[FUWD] metagenome; unknown
880
954
+
Gln
TTG
[ENA]
¢þ
>WENV170633161
FUWD013392285
[FUWD] metagenome; unknown
880
954
+
Gln
TTG
[ENA]
¢þ
>SRA1034259
SRR035089.38582
454 Sequencing (SRP001810)
150
224
+
Gln
TTG
[SRA]
>SRA1034752
SRR035089.166865
454 Sequencing (SRP001810)
151
225
+
Gln
TTG
[SRA]
>SRA1047776
SRR035094.39470
454 Sequencing (SRP001815)
317
391
+
Gln
TTG
[SRA]
Identical group No.672472 (3 seq.)
>SRA1030693
SRR035087.315562
454 Sequencing (SRP001808)
312
241
-
Gln
TTG
[SRA]
>SRA1048197
SRR035094.127412
454 Sequencing (SRP001815)
403
474
+
Gln
TTG
[SRA]
>SRA1049176
SRR035095.33002
454 Sequencing (SRP001816)
252
323
+
Gln
TTG
[SRA]
Identical group No.672491 (7 seq.)
>WENV170624419
FUWD013181295
[FUWD] metagenome; unknown
4768
4842
+
Gln
TTG
[ENA]
¢þ
>WENV170632705
FUWD013386283
[FUWD] metagenome; unknown
4768
4842
+
Gln
TTG
[ENA]
¢þ
>WENV170698466
LGVF01340523
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
407
333
-
Gln
TTG
[ENA]
¢þ
>SRA1030875
SRR035087.341948
454 Sequencing (SRP001808)
247
321
+
Gln
TTG
[SRA]
>SRA1048223
SRR035094.130308
454 Sequencing (SRP001815)
285
211
-
Gln
TTG
[SRA]
>SRA1048543
SRR035094.196557
454 Sequencing (SRP001815)
286
212
-
Gln
TTG
[SRA]
>SRA1049924
SRR035095.161448
454 Sequencing (SRP001816)
154
228
+
Gln
TTG
[SRA]
Identical group No.711121 (3 seq.)
>WENV170612748
FUWD012678207
[FUWD] metagenome; unknown
76
150
+
Gln
TTG
[ENA]
¢þ
>SRA1048469
SRR035094.180954
454 Sequencing (SRP001815)
261
335
+
Gln
TTG
[SRA]
>SRA1048895
SRR035094.278716
454 Sequencing (SRP001815)
86
160
+
Gln
TTG
[SRA]
Identical group No.751689 (1 seq.)
>SRA1047921
SRR035094.68312
454 Sequencing (SRP001815)
248
174
-
Gln
TTG
[SRA]
Identical group No.751691 (2 seq.)
>SRA1047927
SRR035094.69458
454 Sequencing (SRP001815)
195
269
+
Gln
TTG
[SRA]
>SRA1048318
SRR035094.146096
454 Sequencing (SRP001815)
196
270
+
Gln
TTG
[SRA]
Identical group No.751716 (1 seq.)
>SRA1048592
SRR035094.204971
454 Sequencing (SRP001815)
168
94
-
Gln
TTG
[SRA]
Identical group No.751733 (1 seq.)
>SRA1048872
SRR035094.269184
454 Sequencing (SRP001815)
271
345
+
Gln
TTG
[SRA]
Identical group No.779847 (5 seq.)
>WENV170608132
FUWD010895688
[FUWD] metagenome; unknown
651
578
-
Gln
TTG
[ENA]
¢þ
>SRA1026661
SRR035085.252256
454 Sequencing (SRP001806)
94
167
+
Gln
TTG
[SRA]
>SRA1026681
SRR035085.258877
454 Sequencing (SRP001806)
173
102
-
Gln
TTG
[SRA]
>SRA1048379
SRR035094.161273
454 Sequencing (SRP001815)
147
220
+
Gln
TTG
[SRA]
>SRA1050290
SRR035095.232246
454 Sequencing (SRP001816)
118
191
+
Gln
TTG
[SRA]
Identical group No.788200 (5 seq.)
>WENV170608145
FUWD010896263
[FUWD] metagenome; unknown
362
432
+
Gln
TTG
[ENA]
¢þ
>SRA1017866
SRR035082.208021
454 Sequencing (SRP001803)
134
204
+
Gln
TTG
[SRA]
>SRA1031850
SRR035087.498967
454 Sequencing (SRP001808)
385
455
+
Gln
TTG
[SRA]
>SRA1042003
SRR035091.326308
454 Sequencing (SRP001812)
25
95
+
Gln
TTG
[SRA]
>SRA1047847
SRR035094.52912
454 Sequencing (SRP001815)
99
29
-
Gln
TTG
[SRA]
Identical group No.799328 (5 seq.)
>W1711065944
LSCC01000065
Unclassified
Marinimicrobia bacterium TCS52 [LSCC]
7262
7335
+
Gln
TTG
[ENA]
¡û
>WENV170001059
AGBJ01001799
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
625
698
+
Gln
TTG
[ENA]
¢þ
>WENV170605157
FUWD010454931
[FUWD] metagenome; unknown
11
84
+
Gln
TTG
[ENA]
¢þ
>SRA1047745
SRR035094.33764
454 Sequencing (SRP001815)
254
181
-
Gln
TTG
[SRA]
>W1610906558
LSCC01000065
Unclassified
Marinimicrobia bacterium TCS52 [LSCC]
7262
7335
+
Gln
TTG
[ENA]
¡û
Identical group No.804930 (6 seq.)
>WENV170600025
FUWD010103202
[FUWD] metagenome; unknown
371
298
-
Gln
TTG
[ENA]
¢þ
>WENV170626771
FUWD013229363
[FUWD] metagenome; unknown
4488
4415
-
Gln
TTG
[ENA]
¢þ
>SRA1040221
SRR035091.61631
454 Sequencing (SRP001812)
211
284
+
Gln
TTG
[SRA]
>SRA1040339
SRR035091.80956
454 Sequencing (SRP001812)
211
284
+
Gln
TTG
[SRA]
>SRA1041990
SRR035091.323848
454 Sequencing (SRP001812)
233
160
-
Gln
TTG
[SRA]
>SRA1048371
SRR035094.159367
454 Sequencing (SRP001815)
292
219
-
Gln
TTG
[SRA]
Identical group No.808229 (3 seq.)
>WENV183706051
PDWI01002994
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5197
5269
+
Gln
TTG
[ENA]
¢þ
>WENV183711821
PDWI01081479
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1290
1363
+
Gln
TTG
[ENA]
¢þ
>SRA1047735
SRR035094.31579
454 Sequencing (SRP001815)
119
49
-
Gln
TTG
[SRA]
Identical group No.824082 (1 seq.)
>SRA1047944
SRR035094.72674
454 Sequencing (SRP001815)
108
181
+
Gln
TTG
[SRA]
Identical group No.824096 (1 seq.)
>SRA1048495
SRR035094.187030
454 Sequencing (SRP001815)
333
260
-
Gln
TTG
[SRA]
Identical group No.824110 (1 seq.)
>SRA1048887
SRR035094.275974
454 Sequencing (SRP001815)
95
168
+
Gln
TTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK