This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = TTT
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239309 (1 seq.)
>SRA1048201
SRR035094.128343
454 Sequencing (SRP001815)
120
42
-
Lys
TTT
[SRA]
Identical group No.244447 (3 seq.)
>WENV170612715
FUWD012667194
[FUWD] metagenome; unknown
96
20
-
Lys
TTT
[ENA]
¢þ
>SRA1029353
SRR035087.114573
454 Sequencing (SRP001808)
272
348
+
Lys
TTT
[SRA]
>SRA1047725
SRR035094.29822
454 Sequencing (SRP001815)
106
30
-
Lys
TTT
[SRA]
Identical group No.264006 (1 seq.)
>SRA1048431
SRR035094.172584
454 Sequencing (SRP001815)
183
107
-
Lys
TTT
[SRA]
Identical group No.264013 (1 seq.)
>SRA1048617
SRR035094.210804
454 Sequencing (SRP001815)
280
354
+
Lys
TTT
[SRA]
Identical group No.272758 (3 seq.)
>WENV170612297
FUWD012568277
[FUWD] metagenome; unknown
170
97
-
Lys
TTT
[ENA]
¢þ
>SRA1035531
SRR035089.325512
454 Sequencing (SRP001810)
224
151
-
Lys
TTT
[SRA]
>SRA1048281
SRR035094.139047
454 Sequencing (SRP001815)
180
107
-
Lys
TTT
[SRA]
Identical group No.415537 (1 seq.)
>SRA1047988
SRR035094.82975
454 Sequencing (SRP001815)
230
304
+
Lys
TTT
[SRA]
Identical group No.415585 (1 seq.)
>SRA1048779
SRR035094.246880
454 Sequencing (SRP001815)
377
303
-
Lys
TTT
[SRA]
Identical group No.415593 (1 seq.)
>SRA1048920
SRR035094.286199
454 Sequencing (SRP001815)
382
306
-
Lys
TTT
[SRA]
Identical group No.453376 (7 seq.)
>WENV170405871
CEUG01216721
[CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
328
403
+
Lys
TTT
[ENA]
¢þ
>WENV170612727
FUWD012671088
[FUWD] metagenome; unknown
87
12
-
Lys
TTT
[ENA]
¢þ
>WENV170877749
MDTC01063869
[MDTC] marine metagenome; seawater
1465
1540
+
Lys
TTT
[ENA]
¢þ
>WENV170896616
MDTD01098344
[MDTD] marine metagenome; seawater
21072
21147
+
Lys
TTT
[ENA]
¢þ
>SRA1026298
SRR035085.181676
454 Sequencing (SRP001806)
242
317
+
Lys
TTT
[SRA]
>SRA1032936
SRR035088.134306
454 Sequencing (SRP001809)
365
290
-
Lys
TTT
[SRA]
>SRA1047977
SRR035094.80515
454 Sequencing (SRP001815)
236
161
-
Lys
TTT
[SRA]
Identical group No.453432 (5 seq.)
>WENV170623029
FUWD013133729
[FUWD] metagenome; unknown
290
215
-
Lys
TTT
[ENA]
¢þ
>WENV170631264
FUWD013346785
[FUWD] metagenome; unknown
290
215
-
Lys
TTT
[ENA]
¢þ
>SRA1026686
SRR035085.260401
454 Sequencing (SRP001806)
129
54
-
Lys
TTT
[SRA]
>SRA1026697
SRR035085.262509
454 Sequencing (SRP001806)
129
54
-
Lys
TTT
[SRA]
>SRA1048837
SRR035094.260503
454 Sequencing (SRP001815)
206
281
+
Lys
TTT
[SRA]
Identical group No.547983 (2 seq.)
>WENV170607890
FUWD010868036
[FUWD] metagenome; unknown
260
185
-
Lys
TTT
[ENA]
¢þ
>SRA1047741
SRR035094.32845
454 Sequencing (SRP001815)
121
196
+
Lys
TTT
[SRA]
Identical group No.548006 (2 seq.)
>WENV170608207
FUWD010902475
[FUWD] metagenome; unknown
328
255
-
Lys
TTT
[ENA]
¢þ
>SRA1048058
SRR035094.99534
454 Sequencing (SRP001815)
338
265
-
Lys
TTT
[SRA]
Identical group No.548430 (4 seq.)
>WENV170612837
FUWD012700027
[FUWD] metagenome; unknown
235
310
+
Lys
TTT
[ENA]
¢þ
>SRA1019391
SRR035082.448570
454 Sequencing (SRP001803)
76
151
+
Lys
TTT
[SRA]
>SRA1047999
SRR035094.84957
454 Sequencing (SRP001815)
86
11
-
Lys
TTT
[SRA]
>SRA1050315
SRR035095.235732
454 Sequencing (SRP001816)
259
334
+
Lys
TTT
[SRA]
Identical group No.548664 (3 seq.)
>WENV170620578
FUWD013034495
[FUWD] metagenome; unknown
3001
2926
-
Lys
TTT
[ENA]
¢þ
>WENV170628719
FUWD013251881
[FUWD] metagenome; unknown
3001
2926
-
Lys
TTT
[ENA]
¢þ
>SRA1047785
SRR035094.41487
454 Sequencing (SRP001815)
74
149
+
Lys
TTT
[SRA]
Identical group No.612535 (1 seq.)
>SRA1048025
SRR035094.92780
454 Sequencing (SRP001815)
361
286
-
Lys
TTT
[SRA]
Identical group No.612536 (1 seq.)
>SRA1048027
SRR035094.94349
454 Sequencing (SRP001815)
80
155
+
Lys
TTT
[SRA]
Identical group No.612543 (1 seq.)
>SRA1048132
SRR035094.114160
454 Sequencing (SRP001815)
480
405
-
Lys
TTT
[SRA]
Identical group No.612544 (1 seq.)
>SRA1048137
SRR035094.114823
454 Sequencing (SRP001815)
213
285
+
Lys
TTT
[SRA]
Identical group No.612560 (1 seq.)
>SRA1048412
SRR035094.167069
454 Sequencing (SRP001815)
387
312
-
Lys
TTT
[SRA]
Identical group No.612567 (1 seq.)
>SRA1048541
SRR035094.196555
454 Sequencing (SRP001815)
270
345
+
Lys
TTT
[SRA]
Identical group No.612571 (1 seq.)
>SRA1048607
SRR035094.209095
454 Sequencing (SRP001815)
150
222
+
Lys
TTT
[SRA]
Identical group No.612590 (1 seq.)
>SRA1048793
SRR035094.249839
454 Sequencing (SRP001815)
114
39
-
Lys
TTT
[SRA]
Identical group No.654435 (6 seq.)
>WENV170622269
FUWD013095018
[FUWD] metagenome; unknown
613
539
-
Lys
TTT
[ENA]
¢þ
>WENV170630489
FUWD013309730
[FUWD] metagenome; unknown
613
539
-
Lys
TTT
[ENA]
¢þ
>SRA1034336
SRR035089.60462
454 Sequencing (SRP001810)
144
70
-
Lys
TTT
[SRA]
>SRA1034528
SRR035089.116307
454 Sequencing (SRP001810)
143
69
-
Lys
TTT
[SRA]
>SRA1047670
SRR035094.17099
454 Sequencing (SRP001815)
375
301
-
Lys
TTT
[SRA]
>SRA1047689
SRR035094.21371
454 Sequencing (SRP001815)
376
302
-
Lys
TTT
[SRA]
Identical group No.672485 (6 seq.)
>WENV170607670
FUWD010846858
[FUWD] metagenome; unknown
546
474
-
Lys
TTT
[ENA]
¢þ
>SRA1017018
SRR035082.69219
454 Sequencing (SRP001803)
160
88
-
Lys
TTT
[SRA]
>SRA1017536
SRR035082.157743
454 Sequencing (SRP001803)
517
445
-
Lys
TTT
[SRA]
>SRA1019301
SRR035082.432160
454 Sequencing (SRP001803)
6
78
+
Lys
TTT
[SRA]
>SRA1030818
SRR035087.334086
454 Sequencing (SRP001808)
152
224
+
Lys
TTT
[SRA]
>SRA1047837
SRR035094.51455
454 Sequencing (SRP001815)
11
83
+
Lys
TTT
[SRA]
Identical group No.751682 (2 seq.)
>SRA1047791
SRR035094.42045
454 Sequencing (SRP001815)
105
179
+
Lys
TTT
[SRA]
>SRA1048148
SRR035094.117034
454 Sequencing (SRP001815)
105
179
+
Lys
TTT
[SRA]
Identical group No.751706 (1 seq.)
>SRA1048325
SRR035094.148085
454 Sequencing (SRP001815)
340
414
+
Lys
TTT
[SRA]
Identical group No.794104 (3 seq.)
>WENV170612722
FUWD012669893
[FUWD] metagenome; unknown
442
369
-
Lys
TTT
[ENA]
¢þ
>SRA1047902
SRR035094.64663
454 Sequencing (SRP001815)
453
380
-
Lys
TTT
[SRA]
>SRA1054535
SRR035099.157564
454 Sequencing (SRP001820)
84
11
-
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK