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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = AAG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98543 (3 seq.)
>WENV170612217
FUWD012539444
[FUWD] metagenome; unknown
166
79
-
Leu
AAG
[ENA]
¢þ
>SRA1033881
SRR035088.390956
454 Sequencing (SRP001809)
286
199
-
Leu
AAG
[SRA]
>SRA1049115
SRR035095.22835
454 Sequencing (SRP001816)
364
451
+
Leu
AAG
[SRA]
Identical group No.112616 (10 seq.)
>WENV170617862
FUWD012940153
[FUWD] metagenome; unknown
599
514
-
Leu
AAG
[ENA]
¢þ
>SRA1017298
SRR035082.114491
454 Sequencing (SRP001803)
119
34
-
Leu
AAG
[SRA]
>SRA1035743
SRR035089.366761
454 Sequencing (SRP001810)
242
157
-
Leu
AAG
[SRA]
>SRA1039971
SRR035091.4467
454 Sequencing (SRP001812)
194
279
+
Leu
AAG
[SRA]
>SRA1041705
SRR035091.280525
454 Sequencing (SRP001812)
20
105
+
Leu
AAG
[SRA]
>SRA1042073
SRR035091.334758
454 Sequencing (SRP001812)
62
147
+
Leu
AAG
[SRA]
>SRA1043895
SRR035092.191664
454 Sequencing (SRP001813)
89
174
+
Leu
AAG
[SRA]
>SRA1045079
SRR035092.406716
454 Sequencing (SRP001813)
99
184
+
Leu
AAG
[SRA]
>SRA1048847
SRR035094.262502
454 Sequencing (SRP001815)
237
152
-
Leu
AAG
[SRA]
>SRA1050537
SRR035095.286014
454 Sequencing (SRP001816)
103
18
-
Leu
AAG
[SRA]
Identical group No.134859 (2 seq.)
>SRA1033646
SRR035088.311354
454 Sequencing (SRP001809)
309
224
-
Leu
AAG
[SRA]
>SRA1049357
SRR035095.63496
454 Sequencing (SRP001816)
296
211
-
Leu
AAG
[SRA]
Identical group No.134862 (1 seq.)
>SRA1049401
SRR035095.71628
454 Sequencing (SRP001816)
183
268
+
Leu
AAG
[SRA]
Identical group No.134887 (1 seq.)
>SRA1049190
SRR035095.34977
454 Sequencing (SRP001816)
374
457
+
Leu
AAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK