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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = CAC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272456 (8 seq.)
>WENV170611528
FUWD012341016
[FUWD] metagenome; unknown
499
423
-
Val
CAC
[ENA]
¢þ
>WENV170623299
FUWD013145083
[FUWD] metagenome; unknown
1046
1120
+
Val
CAC
[ENA]
¢þ
>WENV170631560
FUWD013357062
[FUWD] metagenome; unknown
364
290
-
Val
CAC
[ENA]
¢þ
>SRA1026668
SRR035085.254263
454 Sequencing (SRP001806)
305
229
-
Val
CAC
[SRA]
>SRA1035814
SRR035089.380834
454 Sequencing (SRP001810)
364
290
-
Val
CAC
[SRA]
>SRA1040580
SRR035091.118543
454 Sequencing (SRP001812)
283
359
+
Val
CAC
[SRA]
>SRA1041815
SRR035091.298278
454 Sequencing (SRP001812)
17
91
+
Val
CAC
[SRA]
>SRA1049211
SRR035095.38768
454 Sequencing (SRP001816)
23
97
+
Val
CAC
[SRA]
Identical group No.357547 (2 seq.)
>WENV170599538
FUWD010079024
[FUWD] metagenome; unknown
249
173
-
Val
CAC
[ENA]
¢þ
>SRA1049478
SRR035095.83134
454 Sequencing (SRP001816)
259
183
-
Val
CAC
[SRA]
Identical group No.372146 (2 seq.)
>SRA1049441
SRR035095.78368
454 Sequencing (SRP001816)
143
219
+
Val
CAC
[SRA]
>SRA1050420
SRR035095.259212
454 Sequencing (SRP001816)
261
337
+
Val
CAC
[SRA]
Identical group No.372161 (2 seq.)
>W131192364
ASLA01000049
Unclassified
Omnitrophica bacterium SCGC AAA252-B19 OP3 bacterium SCGC AAA252-B19 [ASLA]
1311
1387
+
Val
CAC
[ENA]
¡û
>SRA1049578
SRR035095.97771
454 Sequencing (SRP001816)
208
284
+
Val
CAC
[SRA]
Identical group No.372165 (1 seq.)
>SRA1049599
SRR035095.102698
454 Sequencing (SRP001816)
318
394
+
Val
CAC
[SRA]
Identical group No.372169 (2 seq.)
>SRA1049639
SRR035095.109384
454 Sequencing (SRP001816)
277
201
-
Val
CAC
[SRA]
>SRA1050118
SRR035095.195101
454 Sequencing (SRP001816)
277
201
-
Val
CAC
[SRA]
Identical group No.372181 (1 seq.)
>SRA1049848
SRR035095.147301
454 Sequencing (SRP001816)
294
218
-
Val
CAC
[SRA]
Identical group No.654420 (7 seq.)
>WENV170612073
FUWD012496521
[FUWD] metagenome; unknown
147
221
+
Val
CAC
[ENA]
¢þ
>SRA1028935
SRR035087.40403
454 Sequencing (SRP001808)
146
220
+
Val
CAC
[SRA]
>SRA1029718
SRR035087.169817
454 Sequencing (SRP001808)
446
372
-
Val
CAC
[SRA]
>SRA1031159
SRR035087.381917
454 Sequencing (SRP001808)
146
220
+
Val
CAC
[SRA]
>SRA1033384
SRR035088.243355
454 Sequencing (SRP001809)
205
133
-
Val
CAC
[SRA]
>SRA1034204
SRR035089.23032
454 Sequencing (SRP001810)
255
181
-
Val
CAC
[SRA]
>SRA1050295
SRR035095.233197
454 Sequencing (SRP001816)
266
340
+
Val
CAC
[SRA]
Identical group No.654437 (13 seq.)
>WENV170619774
FUWD013020915
[FUWD] metagenome; unknown
1025
1099
+
Val
CAC
[ENA]
¢þ
>WENV170627893
FUWD013239179
[FUWD] metagenome; unknown
1025
1099
+
Val
CAC
[ENA]
¢þ
>WENV170698755
LGVF01407064
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
203
277
+
Val
CAC
[ENA]
¢þ
>SRA1032462
SRR035088.17597
454 Sequencing (SRP001809)
134
208
+
Val
CAC
[SRA]
>SRA1032750
SRR035088.94495
454 Sequencing (SRP001809)
262
336
+
Val
CAC
[SRA]
>SRA1033073
SRR035088.167279
454 Sequencing (SRP001809)
114
188
+
Val
CAC
[SRA]
>SRA1033293
SRR035088.216778
454 Sequencing (SRP001809)
73
1
-
Val
CAC
[SRA]
>SRA1033637
SRR035088.309189
454 Sequencing (SRP001809)
164
90
-
Val
CAC
[SRA]
>SRA1034369
SRR035089.70578
454 Sequencing (SRP001810)
154
80
-
Val
CAC
[SRA]
>SRA1035193
SRR035089.256865
454 Sequencing (SRP001810)
1
75
+
Val
CAC
[SRA]
>SRA1048464
SRR035094.178621
454 Sequencing (SRP001815)
508
434
-
Val
CAC
[SRA]
>SRA1048559
SRR035094.198473
454 Sequencing (SRP001815)
155
81
-
Val
CAC
[SRA]
>SRA1049748
SRR035095.133589
454 Sequencing (SRP001816)
147
221
+
Val
CAC
[SRA]
Identical group No.672327 (13 seq.)
>W1711136308
LVAB01000062
Thermodesulfobacteriota
Syntrophobacterales bacterium Delta_03 [LVAB]
8465
8391
-
Val
CAC
[ENA]
¡û
>WENV181229559
OFEK01000002
[OFEK] activated sludge metagenome; Anaerobic digester
176024
175950
-
Val
CAC
[ENA]
¢þ
>WENV181413106
OGCK01028474
[OGCK] hot springs metagenome; hot spring sediment
855
781
-
Val
CAC
[ENA]
¢þ
>WENV183701698
PDVH01000322
[PDVH] alkali sediment metagenome; glacial lake sediment
7393
7319
-
Val
CAC
[ENA]
¢þ
>WENV183716365
PDWI01303773
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1184
1258
+
Val
CAC
[ENA]
¢þ
>WENV170611978
FUWD012475246
[FUWD] metagenome; unknown
92
166
+
Val
CAC
[ENA]
¢þ
>WENV170697587
LGVF01157846
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
117
191
+
Val
CAC
[ENA]
¢þ
>SRA1029483
SRR035087.135025
454 Sequencing (SRP001808)
92
166
+
Val
CAC
[SRA]
>SRA1029504
SRR035087.137756
454 Sequencing (SRP001808)
338
264
-
Val
CAC
[SRA]
>SRA1049872
SRR035095.150886
454 Sequencing (SRP001816)
337
263
-
Val
CAC
[SRA]
>SRA1050351
SRR035095.242445
454 Sequencing (SRP001816)
86
12
-
Val
CAC
[SRA]
>W1610947428
LVAB01000062
Thermodesulfobacteriota
Syntrophobacterales bacterium Delta_03 [LVAB]
8465
8391
-
Val
CAC
[ENA]
¡û
>WENV079126
AASZ01001256
Olavius algarvensis microbiome from Mediterranean sea
2212
2288
+
Val
CAC
[ENA]
Identical group No.720451 (1 seq.)
>SRA1050368
SRR035095.245243
454 Sequencing (SRP001816)
52
126
+
Val
CAC
[SRA]
Identical group No.720456 (1 seq.)
>SRA1050439
SRR035095.263238
454 Sequencing (SRP001816)
112
183
+
Val
CAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK