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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = CAG
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57914 (3 seq.)
>WENV170605188
FUWD010457300
[FUWD] metagenome; unknown
393
304
-
Leu
CAG
[ENA]
¢þ
>SRA1041802
SRR035091.296971
454 Sequencing (SRP001812)
311
222
-
Leu
CAG
[SRA]
>SRA1049974
SRR035095.170570
454 Sequencing (SRP001816)
379
468
+
Leu
CAG
[SRA]
Identical group No.80338 (1 seq.)
>SRA1049215
SRR035095.39326
454 Sequencing (SRP001816)
249
335
+
Leu
CAG
[SRA]
Identical group No.80345 (1 seq.)
>SRA1050002
SRR035095.175079
454 Sequencing (SRP001816)
15
101
+
Leu
CAG
[SRA]
Identical group No.87102 (5 seq.)
>SRA1029081
SRR035087.69790
454 Sequencing (SRP001808)
59
146
+
Leu
CAG
[SRA]
>SRA1036417
SRR035089.517523
454 Sequencing (SRP001810)
214
127
-
Leu
CAG
[SRA]
>SRA1036676
SRR035089.580063
454 Sequencing (SRP001810)
313
226
-
Leu
CAG
[SRA]
>SRA1038935
SRR035090.397289
454 Sequencing (SRP001811)
163
250
+
Leu
CAG
[SRA]
>SRA1049793
SRR035095.139554
454 Sequencing (SRP001816)
208
121
-
Leu
CAG
[SRA]
Identical group No.100561 (2 seq.)
>SRA1049088
SRR035095.18252
454 Sequencing (SRP001816)
249
334
+
Leu
CAG
[SRA]
>SRA1049235
SRR035095.42479
454 Sequencing (SRP001816)
249
334
+
Leu
CAG
[SRA]
Identical group No.100576 (1 seq.)
>SRA1050511
SRR035095.279788
454 Sequencing (SRP001816)
122
209
+
Leu
CAG
[SRA]
Identical group No.112567 (14 seq.)
>WENV170603378
FUWD010306496
[FUWD] metagenome; unknown
26
112
+
Leu
CAG
[ENA]
¢þ
>WENV170624959
FUWD013189249
[FUWD] metagenome; unknown
293
207
-
Leu
CAG
[ENA]
¢þ
>WENV170633217
FUWD013392883
[FUWD] metagenome; unknown
293
207
-
Leu
CAG
[ENA]
¢þ
>SRA1031448
SRR035087.431918
454 Sequencing (SRP001808)
255
341
+
Leu
CAG
[SRA]
>SRA1032476
SRR035088.19361
454 Sequencing (SRP001809)
132
218
+
Leu
CAG
[SRA]
>SRA1032824
SRR035088.109732
454 Sequencing (SRP001809)
281
195
-
Leu
CAG
[SRA]
>SRA1033468
SRR035088.265659
454 Sequencing (SRP001809)
147
233
+
Leu
CAG
[SRA]
>SRA1034079
SRR035088.477239
454 Sequencing (SRP001809)
153
67
-
Leu
CAG
[SRA]
>SRA1034585
SRR035089.129409
454 Sequencing (SRP001810)
214
300
+
Leu
CAG
[SRA]
>SRA1035142
SRR035089.244699
454 Sequencing (SRP001810)
236
150
-
Leu
CAG
[SRA]
>SRA1036246
SRR035089.479660
454 Sequencing (SRP001810)
34
120
+
Leu
CAG
[SRA]
>SRA1050325
SRR035095.237548
454 Sequencing (SRP001816)
131
217
+
Leu
CAG
[SRA]
>SRA1050509
SRR035095.279418
454 Sequencing (SRP001816)
130
216
+
Leu
CAG
[SRA]
>SRA1054023
SRR035099.36441
454 Sequencing (SRP001820)
154
240
+
Leu
CAG
[SRA]
Identical group No.118305 (9 seq.)
>WENV170622841
FUWD013123298
[FUWD] metagenome; unknown
190
276
+
Leu
CAG
[ENA]
¢þ
>WENV170631059
FUWD013336852
[FUWD] metagenome; unknown
190
276
+
Leu
CAG
[ENA]
¢þ
>SRA1029626
SRR035087.153415
454 Sequencing (SRP001808)
190
276
+
Leu
CAG
[SRA]
>SRA1040658
SRR035091.128896
454 Sequencing (SRP001812)
337
251
-
Leu
CAG
[SRA]
>SRA1041691
SRR035091.279502
454 Sequencing (SRP001812)
336
250
-
Leu
CAG
[SRA]
>SRA1043913
SRR035092.193060
454 Sequencing (SRP001813)
76
162
+
Leu
CAG
[SRA]
>SRA1049060
SRR035095.12300
454 Sequencing (SRP001816)
91
177
+
Leu
CAG
[SRA]
>SRA1049254
SRR035095.45830
454 Sequencing (SRP001816)
91
177
+
Leu
CAG
[SRA]
>SRA1049951
SRR035095.165716
454 Sequencing (SRP001816)
91
177
+
Leu
CAG
[SRA]
Identical group No.131716 (3 seq.)
>WENV170612812
FUWD012694649
[FUWD] metagenome; unknown
294
380
+
Leu
CAG
[ENA]
¢þ
>SRA1049779
SRR035095.137562
454 Sequencing (SRP001816)
302
388
+
Leu
CAG
[SRA]
>SRA1050047
SRR035095.180817
454 Sequencing (SRP001816)
305
391
+
Leu
CAG
[SRA]
Identical group No.131788 (5 seq.)
>WENV170621654
FUWD013067561
[FUWD] metagenome; unknown
843
929
+
Leu
CAG
[ENA]
¢þ
>WENV170629845
FUWD013283404
[FUWD] metagenome; unknown
843
929
+
Leu
CAG
[ENA]
¢þ
>SRA1048131
SRR035094.113892
454 Sequencing (SRP001815)
161
247
+
Leu
CAG
[SRA]
>SRA1048374
SRR035094.159642
454 Sequencing (SRP001815)
162
248
+
Leu
CAG
[SRA]
>SRA1049094
SRR035095.18489
454 Sequencing (SRP001816)
187
273
+
Leu
CAG
[SRA]
Identical group No.134856 (1 seq.)
>SRA1049143
SRR035095.27705
454 Sequencing (SRP001816)
343
257
-
Leu
CAG
[SRA]
Identical group No.134858 (1 seq.)
>SRA1049316
SRR035095.55883
454 Sequencing (SRP001816)
374
288
-
Leu
CAG
[SRA]
Identical group No.134867 (1 seq.)
>SRA1049768
SRR035095.136519
454 Sequencing (SRP001816)
82
168
+
Leu
CAG
[SRA]
Identical group No.134877 (1 seq.)
>SRA1050553
SRR035095.290509
454 Sequencing (SRP001816)
139
223
+
Leu
CAG
[SRA]
Identical group No.134878 (1 seq.)
>SRA1050559
SRR035095.292157
454 Sequencing (SRP001816)
402
319
-
Leu
CAG
[SRA]
Identical group No.134879 (1 seq.)
>SRA1050576
SRR035095.295744
454 Sequencing (SRP001816)
118
32
-
Leu
CAG
[SRA]
Identical group No.157519 (6 seq.)
>WENV170626734
FUWD013229155
[FUWD] metagenome; unknown
2829
2744
-
Leu
CAG
[ENA]
¢þ
>WENV170629999
FUWD013289331
[FUWD] metagenome; unknown
8133
8048
-
Leu
CAG
[ENA]
¢þ
>SRA1016868
SRR035082.44910
454 Sequencing (SRP001803)
304
389
+
Leu
CAG
[SRA]
>SRA1031213
SRR035087.392392
454 Sequencing (SRP001808)
294
209
-
Leu
CAG
[SRA]
>SRA1041093
SRR035091.194858
454 Sequencing (SRP001812)
110
25
-
Leu
CAG
[SRA]
>SRA1049944
SRR035095.164512
454 Sequencing (SRP001816)
509
424
-
Leu
CAG
[SRA]
Identical group No.167788 (1 seq.)
>SRA1050464
SRR035095.268702
454 Sequencing (SRP001816)
312
229
-
Leu
CAG
[SRA]
Identical group No.256340 (1 seq.)
>SRA1050381
SRR035095.248493
454 Sequencing (SRP001816)
475
399
-
Leu
CAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK