This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = CCG
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272563 (11 seq.)
>WENV170624130
FUWD013175373
[FUWD] metagenome; unknown
8225
8301
+
Arg
CCG
[ENA]
¢þ
>WENV170632412
FUWD013381548
[FUWD] metagenome; unknown
8225
8301
+
Arg
CCG
[ENA]
¢þ
>SRA1030156
SRR035087.234854
454 Sequencing (SRP001808)
71
146
+
Arg
CCG
[SRA]
>SRA1033686
SRR035088.325679
454 Sequencing (SRP001809)
473
397
-
Arg
CCG
[SRA]
>SRA1034478
SRR035089.105695
454 Sequencing (SRP001810)
231
307
+
Arg
CCG
[SRA]
>SRA1035021
SRR035089.220716
454 Sequencing (SRP001810)
173
248
+
Arg
CCG
[SRA]
>SRA1047657
SRR035094.13338
454 Sequencing (SRP001815)
214
290
+
Arg
CCG
[SRA]
>SRA1047683
SRR035094.19607
454 Sequencing (SRP001815)
296
220
-
Arg
CCG
[SRA]
>SRA1048093
SRR035094.107205
454 Sequencing (SRP001815)
407
331
-
Arg
CCG
[SRA]
>SRA1048166
SRR035094.121140
454 Sequencing (SRP001815)
297
221
-
Arg
CCG
[SRA]
>SRA1049312
SRR035095.54840
454 Sequencing (SRP001816)
162
86
-
Arg
CCG
[SRA]
Identical group No.272593 (13 seq.)
>WENV170621642
FUWD013066891
[FUWD] metagenome; unknown
1004
1080
+
Arg
CCG
[ENA]
¢þ
>WENV170629832
FUWD013282834
[FUWD] metagenome; unknown
1004
1080
+
Arg
CCG
[ENA]
¢þ
>WENV170723226
LSQX01259727
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
75
1
-
Arg
CCG
[ENA]
¢þ
>SRA1029307
SRR035087.106793
454 Sequencing (SRP001808)
178
254
+
Arg
CCG
[SRA]
>SRA1029948
SRR035087.206764
454 Sequencing (SRP001808)
178
254
+
Arg
CCG
[SRA]
>SRA1030023
SRR035087.217992
454 Sequencing (SRP001808)
103
179
+
Arg
CCG
[SRA]
>SRA1030483
SRR035087.285536
454 Sequencing (SRP001808)
121
45
-
Arg
CCG
[SRA]
>SRA1032162
SRR035087.566305
454 Sequencing (SRP001808)
146
222
+
Arg
CCG
[SRA]
>SRA1034631
SRR035089.140660
454 Sequencing (SRP001810)
289
365
+
Arg
CCG
[SRA]
>SRA1035354
SRR035089.289269
454 Sequencing (SRP001810)
205
129
-
Arg
CCG
[SRA]
>SRA1035816
SRR035089.381053
454 Sequencing (SRP001810)
153
77
-
Arg
CCG
[SRA]
>SRA1036041
SRR035089.432625
454 Sequencing (SRP001810)
152
76
-
Arg
CCG
[SRA]
>SRA1050538
SRR035095.286037
454 Sequencing (SRP001816)
187
263
+
Arg
CCG
[SRA]
Identical group No.272808 (4 seq.)
>WENV170605120
FUWD010451263
[FUWD] metagenome; unknown
800
724
-
Arg
CCG
[ENA]
¢þ
>SRA1035887
SRR035089.396004
454 Sequencing (SRP001810)
303
227
-
Arg
CCG
[SRA]
>SRA1049497
SRR035095.86754
454 Sequencing (SRP001816)
176
100
-
Arg
CCG
[SRA]
>SRA1054300
SRR035099.101695
454 Sequencing (SRP001820)
56
132
+
Arg
CCG
[SRA]
Identical group No.321195 (3 seq.)
>WENV170612775
FUWD012686364
[FUWD] metagenome; unknown
80
154
+
Arg
CCG
[ENA]
¢þ
>SRA1049091
SRR035095.18347
454 Sequencing (SRP001816)
90
164
+
Arg
CCG
[SRA]
>SRA1054426
SRR035099.131535
454 Sequencing (SRP001820)
422
496
+
Arg
CCG
[SRA]
Identical group No.343532 (4 seq.)
>W1711137190
LVBB01000088
Planctomycetota
Phycisphaerales bacterium Planc_01 [LVBB]
4454
4381
-
Arg
CCG
[ENA]
¡û
>WENV181413605
OGCK01096066
[OGCK] hot springs metagenome; hot spring sediment
441
368
-
Arg
CCG
[ENA]
¢þ
>SRA1050054
SRR035095.184020
454 Sequencing (SRP001816)
286
213
-
Arg
CCG
[SRA]
>W1610948310
LVBB01000088
Planctomycetota
Phycisphaerales bacterium Planc_01 [LVBB]
4454
4381
-
Arg
CCG
[ENA]
¡û
Identical group No.357543 (4 seq.)
>WENV170599392
FUWD010073229
[FUWD] metagenome; unknown
15
91
+
Arg
CCG
[ENA]
¢þ
>SRA1032894
SRR035088.124021
454 Sequencing (SRP001809)
101
177
+
Arg
CCG
[SRA]
>SRA1033473
SRR035088.268160
454 Sequencing (SRP001809)
15
91
+
Arg
CCG
[SRA]
>SRA1049287
SRR035095.50530
454 Sequencing (SRP001816)
97
173
+
Arg
CCG
[SRA]
Identical group No.358683 (7 seq.)
>WENV170621363
FUWD013056620
[FUWD] metagenome; unknown
646
570
-
Arg
CCG
[ENA]
¢þ
>WENV170629542
FUWD013273023
[FUWD] metagenome; unknown
646
570
-
Arg
CCG
[ENA]
¢þ
>SRA1033019
SRR035088.152866
454 Sequencing (SRP001809)
114
190
+
Arg
CCG
[SRA]
>SRA1041901
SRR035091.313159
454 Sequencing (SRP001812)
94
18
-
Arg
CCG
[SRA]
>SRA1042684
SRR035091.429478
454 Sequencing (SRP001812)
94
18
-
Arg
CCG
[SRA]
>SRA1044759
SRR035092.335705
454 Sequencing (SRP001813)
293
217
-
Arg
CCG
[SRA]
>SRA1050490
SRR035095.274282
454 Sequencing (SRP001816)
223
147
-
Arg
CCG
[SRA]
Identical group No.372126 (3 seq.)
>WENV170001102
AGBJ01004535
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
726
802
+
Arg
CCG
[ENA]
¢þ
>SRA1048731
SRR035094.236420
454 Sequencing (SRP001815)
157
233
+
Arg
CCG
[SRA]
>SRA1049158
SRR035095.30286
454 Sequencing (SRP001816)
172
248
+
Arg
CCG
[SRA]
Identical group No.372144 (1 seq.)
>SRA1049354
SRR035095.62191
454 Sequencing (SRP001816)
309
384
+
Arg
CCG
[SRA]
Identical group No.372224 (3 seq.)
>WENV170528847
CEWJ01079998
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
163
239
+
Arg
CCG
[ENA]
¢þ
>WENV170900929
MDTD01161855
[MDTD] marine metagenome; seawater
6087
6011
-
Arg
CCG
[ENA]
¢þ
>SRA1050482
SRR035095.271732
454 Sequencing (SRP001816)
244
168
-
Arg
CCG
[SRA]
Identical group No.512644 (14 seq.)
>W131208420
ATHJ01000076
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
172338
172413
+
Arg
CCG
[ENA]
¡û
>C171038086
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
1405893
1405818
-
Arg
CCG
-
¡û
>C171100892
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
1406246
1406171
-
Arg
CCG
-
¡û
>WENV180274928
OBHO01012281
[OBHO] metagenome; water
98
173
+
Arg
CCG
[ENA]
¢þ
>WENV180346141
OBLN01030328
[OBLN] sediment metagenome; sediment
585
660
+
Arg
CCG
[ENA]
¢þ
>WENV170623105
FUWD013136630
[FUWD] metagenome; unknown
695
770
+
Arg
CCG
[ENA]
¢þ
>WENV170697367
LGVF01122655
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
223
148
-
Arg
CCG
[ENA]
¢þ
>SRA1033684
SRR035088.324319
454 Sequencing (SRP001809)
45
120
+
Arg
CCG
[SRA]
>SRA1047772
SRR035094.38497
454 Sequencing (SRP001815)
396
321
-
Arg
CCG
[SRA]
>SRA1049146
SRR035095.28072
454 Sequencing (SRP001816)
351
426
+
Arg
CCG
[SRA]
>SRA1049192
SRR035095.35150
454 Sequencing (SRP001816)
211
286
+
Arg
CCG
[SRA]
>SRA1049631
SRR035095.108085
454 Sequencing (SRP001816)
211
286
+
Arg
CCG
[SRA]
>SRA1050312
SRR035095.235400
454 Sequencing (SRP001816)
212
287
+
Arg
CCG
[SRA]
>W1710600539
FUWN01000006
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
46476
46401
-
Arg
CCG
[ENA]
¡û
Identical group No.563096 (1 seq.)
>SRA1049613
SRR035095.104744
454 Sequencing (SRP001816)
81
153
+
Arg
CCG
[SRA]
Identical group No.686056 (9 seq.)
>WENV170620081
FUWD013025463
[FUWD] metagenome; unknown
5538
5610
+
Arg
CCG
[ENA]
¢þ
>WENV170628206
FUWD013243365
[FUWD] metagenome; unknown
5538
5610
+
Arg
CCG
[ENA]
¢þ
>WENV170697211
LGVF01095749
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
116
44
-
Arg
CCG
[ENA]
¢þ
>SRA1037763
SRR035090.190053
454 Sequencing (SRP001811)
89
17
-
Arg
CCG
[SRA]
>SRA1048207
SRR035094.128915
454 Sequencing (SRP001815)
269
197
-
Arg
CCG
[SRA]
>SRA1049738
SRR035095.129731
454 Sequencing (SRP001816)
476
404
-
Arg
CCG
[SRA]
>SRA1050529
SRR035095.283404
454 Sequencing (SRP001816)
80
152
+
Arg
CCG
[SRA]
>SRA1054210
SRR035099.85080
454 Sequencing (SRP001820)
177
249
+
Arg
CCG
[SRA]
>SRA1054848
SRR035099.228940
454 Sequencing (SRP001820)
255
183
-
Arg
CCG
[SRA]
Identical group No.711376 (5 seq.)
>WENV170622018
FUWD013084120
[FUWD] metagenome; unknown
1519
1593
+
Arg
CCG
[ENA]
¢þ
>WENV170630221
FUWD013299288
[FUWD] metagenome; unknown
1519
1593
+
Arg
CCG
[ENA]
¢þ
>SRA1037671
SRR035090.172361
454 Sequencing (SRP001811)
56
130
+
Arg
CCG
[SRA]
>SRA1049845
SRR035095.147008
454 Sequencing (SRP001816)
399
472
+
Arg
CCG
[SRA]
>SRA1050390
SRR035095.250836
454 Sequencing (SRP001816)
376
450
+
Arg
CCG
[SRA]
Identical group No.720408 (3 seq.)
>SRA1040010
SRR035091.16511
454 Sequencing (SRP001812)
305
233
-
Arg
CCG
[SRA]
>SRA1049364
SRR035095.64132
454 Sequencing (SRP001816)
285
357
+
Arg
CCG
[SRA]
>SRA1050467
SRR035095.269496
454 Sequencing (SRP001816)
225
297
+
Arg
CCG
[SRA]
Identical group No.720453 (1 seq.)
>SRA1050397
SRR035095.252891
454 Sequencing (SRP001816)
329
403
+
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK