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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = CGC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453289 (10 seq.)
>WENV170625508
FUWD013199465
[FUWD] metagenome; unknown
526
451
-
Ala
CGC
[ENA]
¢þ
>WENV170633738
FUWD013401836
[FUWD] metagenome; unknown
526
451
-
Ala
CGC
[ENA]
¢þ
>SRA1025818
SRR035085.88766
454 Sequencing (SRP001806)
190
265
+
Ala
CGC
[SRA]
>SRA1034840
SRR035089.183711
454 Sequencing (SRP001810)
76
1
-
Ala
CGC
[SRA]
>SRA1047742
SRR035094.32863
454 Sequencing (SRP001815)
323
248
-
Ala
CGC
[SRA]
>SRA1048094
SRR035094.107319
454 Sequencing (SRP001815)
443
368
-
Ala
CGC
[SRA]
>SRA1048909
SRR035094.283227
454 Sequencing (SRP001815)
277
352
+
Ala
CGC
[SRA]
>SRA1050164
SRR035095.204107
454 Sequencing (SRP001816)
238
163
-
Ala
CGC
[SRA]
>SRA1050314
SRR035095.235562
454 Sequencing (SRP001816)
258
183
-
Ala
CGC
[SRA]
>SRA1050466
SRR035095.268840
454 Sequencing (SRP001816)
124
49
-
Ala
CGC
[SRA]
Identical group No.453301 (18 seq.)
>WENV170599810
FUWD010093140
[FUWD] metagenome; unknown
98
23
-
Ala
CGC
[ENA]
¢þ
>WENV170616607
FUWD012893975
[FUWD] metagenome; unknown
454
379
-
Ala
CGC
[ENA]
¢þ
>WENV170624460
FUWD013182011
[FUWD] metagenome; unknown
297
222
-
Ala
CGC
[ENA]
¢þ
>WENV170632745
FUWD013386866
[FUWD] metagenome; unknown
297
222
-
Ala
CGC
[ENA]
¢þ
>WENV170698493
LGVF01347033
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
340
415
+
Ala
CGC
[ENA]
¢þ
>SRA1025895
SRR035085.104932
454 Sequencing (SRP001806)
291
216
-
Ala
CGC
[SRA]
>SRA1029030
SRR035087.61205
454 Sequencing (SRP001808)
181
106
-
Ala
CGC
[SRA]
>SRA1029222
SRR035087.94344
454 Sequencing (SRP001808)
248
173
-
Ala
CGC
[SRA]
>SRA1029279
SRR035087.102080
454 Sequencing (SRP001808)
7
82
+
Ala
CGC
[SRA]
>SRA1029387
SRR035087.119831
454 Sequencing (SRP001808)
181
106
-
Ala
CGC
[SRA]
>SRA1029856
SRR035087.192688
454 Sequencing (SRP001808)
301
376
+
Ala
CGC
[SRA]
>SRA1034771
SRR035089.169518
454 Sequencing (SRP001810)
444
519
+
Ala
CGC
[SRA]
>SRA1035237
SRR035089.265471
454 Sequencing (SRP001810)
267
342
+
Ala
CGC
[SRA]
>SRA1036282
SRR035089.487511
454 Sequencing (SRP001810)
267
342
+
Ala
CGC
[SRA]
>SRA1048414
SRR035094.167855
454 Sequencing (SRP001815)
130
205
+
Ala
CGC
[SRA]
>SRA1048502
SRR035094.187989
454 Sequencing (SRP001815)
137
212
+
Ala
CGC
[SRA]
>SRA1048510
SRR035094.190647
454 Sequencing (SRP001815)
139
214
+
Ala
CGC
[SRA]
>SRA1049159
SRR035095.30316
454 Sequencing (SRP001816)
283
358
+
Ala
CGC
[SRA]
Identical group No.453840 (10 seq.)
>WENV170607702
FUWD010850342
[FUWD] metagenome; unknown
320
246
-
Ala
CGC
[ENA]
¢þ
>WENV170612056
FUWD012491973
[FUWD] metagenome; unknown
99
173
+
Ala
CGC
[ENA]
¢þ
>SRA1018627
SRR035082.324799
454 Sequencing (SRP001803)
323
249
-
Ala
CGC
[SRA]
>SRA1028850
SRR035087.20391
454 Sequencing (SRP001808)
135
209
+
Ala
CGC
[SRA]
>SRA1030746
SRR035087.325296
454 Sequencing (SRP001808)
129
203
+
Ala
CGC
[SRA]
>SRA1032885
SRR035088.121820
454 Sequencing (SRP001809)
182
108
-
Ala
CGC
[SRA]
>SRA1036361
SRR035089.501597
454 Sequencing (SRP001810)
131
55
-
Ala
CGC
[SRA]
>SRA1036520
SRR035089.536623
454 Sequencing (SRP001810)
131
55
-
Ala
CGC
[SRA]
>SRA1048668
SRR035094.221533
454 Sequencing (SRP001815)
119
193
+
Ala
CGC
[SRA]
>SRA1049481
SRR035095.83546
454 Sequencing (SRP001816)
112
36
-
Ala
CGC
[SRA]
Identical group No.484497 (5 seq.)
>W1711317597
MAXL01000040
Thermodesulfobacteriota
Desulfobacterales bacterium S5133MH16 [MAXL]
15180
15105
-
Ala
CGC
[ENA]
¡û
>WENV170697026
LGVF01073069
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
4460
4385
-
Ala
CGC
[ENA]
¢þ
>SRA1031816
SRR035087.494480
454 Sequencing (SRP001808)
169
94
-
Ala
CGC
[SRA]
>SRA1049416
SRR035095.74390
454 Sequencing (SRP001816)
106
31
-
Ala
CGC
[SRA]
>SRA1050485
SRR035095.272440
454 Sequencing (SRP001816)
419
491
+
Ala
CGC
[SRA]
Identical group No.547530 (11 seq.)
>WENV170600185
FUWD010112598
[FUWD] metagenome; unknown
92
167
+
Ala
CGC
[ENA]
¢þ
>WENV170617534
FUWD012929050
[FUWD] metagenome; unknown
161
236
+
Ala
CGC
[ENA]
¢þ
>WENV170625232
FUWD013193874
[FUWD] metagenome; unknown
1483
1558
+
Ala
CGC
[ENA]
¢þ
>WENV170633483
FUWD013396843
[FUWD] metagenome; unknown
1483
1558
+
Ala
CGC
[ENA]
¢þ
>SRA1032580
SRR035088.53753
454 Sequencing (SRP001809)
117
42
-
Ala
CGC
[SRA]
>SRA1032751
SRR035088.94598
454 Sequencing (SRP001809)
66
141
+
Ala
CGC
[SRA]
>SRA1033249
SRR035088.206053
454 Sequencing (SRP001809)
274
199
-
Ala
CGC
[SRA]
>SRA1033303
SRR035088.219940
454 Sequencing (SRP001809)
449
524
+
Ala
CGC
[SRA]
>SRA1033317
SRR035088.223162
454 Sequencing (SRP001809)
212
137
-
Ala
CGC
[SRA]
>SRA1033689
SRR035088.325919
454 Sequencing (SRP001809)
161
236
+
Ala
CGC
[SRA]
>SRA1050684
SRR035095.326223
454 Sequencing (SRP001816)
224
149
-
Ala
CGC
[SRA]
Identical group No.548918 (4 seq.)
>WENV170625270
FUWD013194611
[FUWD] metagenome; unknown
2225
2297
+
Ala
CGC
[ENA]
¢þ
>WENV170633512
FUWD013397488
[FUWD] metagenome; unknown
2225
2297
+
Ala
CGC
[ENA]
¢þ
>SRA1048866
SRR035094.266604
454 Sequencing (SRP001815)
118
46
-
Ala
CGC
[SRA]
>SRA1050360
SRR035095.243470
454 Sequencing (SRP001816)
369
297
-
Ala
CGC
[SRA]
Identical group No.563060 (1 seq.)
>SRA1049128
SRR035095.25612
454 Sequencing (SRP001816)
99
24
-
Ala
CGC
[SRA]
Identical group No.563066 (1 seq.)
>SRA1049220
SRR035095.39890
454 Sequencing (SRP001816)
341
416
+
Ala
CGC
[SRA]
Identical group No.563068 (1 seq.)
>SRA1049250
SRR035095.44478
454 Sequencing (SRP001816)
318
393
+
Ala
CGC
[SRA]
Identical group No.563080 (1 seq.)
>SRA1049433
SRR035095.77355
454 Sequencing (SRP001816)
381
454
+
Ala
CGC
[SRA]
Identical group No.563116 (1 seq.)
>SRA1049923
SRR035095.160895
454 Sequencing (SRP001816)
92
17
-
Ala
CGC
[SRA]
Identical group No.720407 (1 seq.)
>SRA1049346
SRR035095.61000
454 Sequencing (SRP001816)
339
265
-
Ala
CGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK