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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = CGG
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254017 (2 seq.)
>WENV170605214
FUWD010459083
[FUWD] metagenome; unknown
167
244
+
Pro
CGG
[ENA]
¢þ
>SRA1050055
SRR035095.184236
454 Sequencing (SRP001816)
177
254
+
Pro
CGG
[SRA]
Identical group No.254201 (2 seq.)
>WENV170618899
FUWD012991452
[FUWD] metagenome; unknown
187
110
-
Pro
CGG
[ENA]
¢þ
>SRA1049404
SRR035095.72071
454 Sequencing (SRP001816)
342
419
+
Pro
CGG
[SRA]
Identical group No.272291 (16 seq.)
>WENV183513228
OMKS01003465
[OMKS] sediment metagenome; hot spring sediment
1022
1098
+
Pro
CGG
[ENA]
¢þ
>WENV183513301
OMKS01003920
[OMKS] sediment metagenome; hot spring sediment
6068
5992
-
Pro
CGG
[ENA]
¢þ
>WENV170624197
FUWD013177470
[FUWD] metagenome; unknown
2793
2869
+
Pro
CGG
[ENA]
¢þ
>WENV170624755
FUWD013186190
[FUWD] metagenome; unknown
4479
4555
+
Pro
CGG
[ENA]
¢þ
>WENV170632480
FUWD013383226
[FUWD] metagenome; unknown
2793
2869
+
Pro
CGG
[ENA]
¢þ
>WENV170633034
FUWD013390317
[FUWD] metagenome; unknown
4479
4555
+
Pro
CGG
[ENA]
¢þ
>SRA1025699
SRR035085.68932
454 Sequencing (SRP001806)
43
119
+
Pro
CGG
[SRA]
>SRA1026365
SRR035085.193792
454 Sequencing (SRP001806)
212
136
-
Pro
CGG
[SRA]
>SRA1030819
SRR035087.334450
454 Sequencing (SRP001808)
157
81
-
Pro
CGG
[SRA]
>SRA1031542
SRR035087.446815
454 Sequencing (SRP001808)
217
141
-
Pro
CGG
[SRA]
>SRA1032772
SRR035088.100346
454 Sequencing (SRP001809)
97
21
-
Pro
CGG
[SRA]
>SRA1035519
SRR035089.322898
454 Sequencing (SRP001810)
244
168
-
Pro
CGG
[SRA]
>SRA1049464
SRR035095.81878
454 Sequencing (SRP001816)
174
250
+
Pro
CGG
[SRA]
>SRA1049620
SRR035095.105670
454 Sequencing (SRP001816)
174
250
+
Pro
CGG
[SRA]
>SRA1049752
SRR035095.134484
454 Sequencing (SRP001816)
371
295
-
Pro
CGG
[SRA]
>SRA1050623
SRR035095.309162
454 Sequencing (SRP001816)
88
12
-
Pro
CGG
[SRA]
Identical group No.315272 (4 seq.)
>WENV181413599
OGCK01094495
[OGCK] hot springs metagenome; hot spring sediment
285
361
+
Pro
CGG
[ENA]
¢þ
>WENV183516102
OMKS01131716
[OMKS] sediment metagenome; hot spring sediment
244
170
-
Pro
CGG
[ENA]
¢þ
>WENV170974664
MTKY01070883
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1305
1379
+
Pro
CGG
[ENA]
¢þ
>SRA1050177
SRR035095.206536
454 Sequencing (SRP001816)
257
181
-
Pro
CGG
[SRA]
Identical group No.321182 (3 seq.)
>WENV170612949
FUWD012761926
[FUWD] metagenome; unknown
337
413
+
Pro
CGG
[ENA]
¢þ
>SRA1049305
SRR035095.54030
454 Sequencing (SRP001816)
257
181
-
Pro
CGG
[SRA]
>SRA1054298
SRR035099.100977
454 Sequencing (SRP001820)
380
456
+
Pro
CGG
[SRA]
Identical group No.358364 (4 seq.)
>WENV170612549
FUWD012632821
[FUWD] metagenome; unknown
168
92
-
Pro
CGG
[ENA]
¢þ
>SRA1042604
SRR035091.414725
454 Sequencing (SRP001812)
168
92
-
Pro
CGG
[SRA]
>SRA1050036
SRR035095.179808
454 Sequencing (SRP001816)
68
144
+
Pro
CGG
[SRA]
>SRA1050705
SRR035095.332754
454 Sequencing (SRP001816)
68
144
+
Pro
CGG
[SRA]
Identical group No.358392 (3 seq.)
>WENV170612763
FUWD012683094
[FUWD] metagenome; unknown
152
76
-
Pro
CGG
[ENA]
¢þ
>SRA1048054
SRR035094.98935
454 Sequencing (SRP001815)
144
68
-
Pro
CGG
[SRA]
>SRA1050231
SRR035095.217263
454 Sequencing (SRP001816)
384
460
+
Pro
CGG
[SRA]
Identical group No.358404 (3 seq.)
>WENV170612818
FUWD012695928
[FUWD] metagenome; unknown
92
16
-
Pro
CGG
[ENA]
¢þ
>SRA1049912
SRR035095.158530
454 Sequencing (SRP001816)
102
26
-
Pro
CGG
[SRA]
>SRA1050522
SRR035095.282213
454 Sequencing (SRP001816)
102
26
-
Pro
CGG
[SRA]
Identical group No.372137 (1 seq.)
>SRA1049306
SRR035095.54080
454 Sequencing (SRP001816)
169
93
-
Pro
CGG
[SRA]
Identical group No.372168 (1 seq.)
>SRA1049625
SRR035095.106750
454 Sequencing (SRP001816)
378
304
-
Pro
CGG
[SRA]
Identical group No.372183 (1 seq.)
>SRA1049855
SRR035095.148393
454 Sequencing (SRP001816)
227
303
+
Pro
CGG
[SRA]
Identical group No.372193 (1 seq.)
>SRA1049968
SRR035095.170004
454 Sequencing (SRP001816)
244
320
+
Pro
CGG
[SRA]
Identical group No.453807 (110 seq.)
>W1711167300
LVWG01000018
Chlorobiota
Pelodictyon luteolum [LVWG]
66695
66622
-
Pro
CGG
[ENA]
¡û
>C016760
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
1450910
1450838
-
Pro
CGG
[Ensembl]
¡û
>C018273
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1162363
1162288
-
Pro
CGG
[Ensembl]
¡û
>WENV183812097
PYLN01000012
[PYLN] freshwater metagenome; meromictic lake
22232
22159
-
Pro
CGG
[ENA]
¢þ
>WENV170613669
FUWD012816079
[FUWD] metagenome; unknown
11659
11732
+
Pro
CGG
[ENA]
¢þ
>WENV170614045
FUWD012824125
[FUWD] metagenome; unknown
12150
12223
+
Pro
CGG
[ENA]
¢þ
>WENV170614046
FUWD012824126
[FUWD] metagenome; unknown
148
221
+
Pro
CGG
[ENA]
¢þ
>W09103341
AAJD01000001
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
159437
159362
-
Pro
CGG
[ENA]
¡û
>SRA1016888
SRR035082.47881
454 Sequencing (SRP001803)
116
189
+
Pro
CGG
[SRA]
>SRA1016909
SRR035082.50899
454 Sequencing (SRP001803)
170
97
-
Pro
CGG
[SRA]
>SRA1019892
SRR035083.16801
454 Sequencing (SRP001804)
425
352
-
Pro
CGG
[SRA]
>SRA1019991
SRR035083.37666
454 Sequencing (SRP001804)
51
126
+
Pro
CGG
[SRA]
>SRA1020081
SRR035083.55369
454 Sequencing (SRP001804)
112
39
-
Pro
CGG
[SRA]
>SRA1020131
SRR035083.60883
454 Sequencing (SRP001804)
187
260
+
Pro
CGG
[SRA]
>SRA1020134
SRR035083.61071
454 Sequencing (SRP001804)
264
337
+
Pro
CGG
[SRA]
>SRA1020194
SRR035083.71740
454 Sequencing (SRP001804)
466
393
-
Pro
CGG
[SRA]
>SRA1020233
SRR035083.78964
454 Sequencing (SRP001804)
480
407
-
Pro
CGG
[SRA]
>SRA1020528
SRR035083.130659
454 Sequencing (SRP001804)
190
117
-
Pro
CGG
[SRA]
>SRA1020638
SRR035083.145437
454 Sequencing (SRP001804)
433
360
-
Pro
CGG
[SRA]
>SRA1020759
SRR035083.160179
454 Sequencing (SRP001804)
523
450
-
Pro
CGG
[SRA]
>SRA1020852
SRR035083.173092
454 Sequencing (SRP001804)
158
85
-
Pro
CGG
[SRA]
>SRA1020912
SRR035083.183841
454 Sequencing (SRP001804)
158
85
-
Pro
CGG
[SRA]
>SRA1021024
SRR035083.199199
454 Sequencing (SRP001804)
93
166
+
Pro
CGG
[SRA]
>SRA1021084
SRR035083.206128
454 Sequencing (SRP001804)
159
86
-
Pro
CGG
[SRA]
>SRA1021360
SRR035083.249816
454 Sequencing (SRP001804)
198
125
-
Pro
CGG
[SRA]
>SRA1021377
SRR035083.252808
454 Sequencing (SRP001804)
114
187
+
Pro
CGG
[SRA]
>SRA1021396
SRR035083.254039
454 Sequencing (SRP001804)
104
177
+
Pro
CGG
[SRA]
>SRA1021484
SRR035083.264744
454 Sequencing (SRP001804)
93
166
+
Pro
CGG
[SRA]
>SRA1021598
SRR035083.278813
454 Sequencing (SRP001804)
191
118
-
Pro
CGG
[SRA]
>SRA1021655
SRR035083.287624
454 Sequencing (SRP001804)
381
454
+
Pro
CGG
[SRA]
>SRA1021716
SRR035083.296557
454 Sequencing (SRP001804)
105
178
+
Pro
CGG
[SRA]
>SRA1021792
SRR035083.310429
454 Sequencing (SRP001804)
259
332
+
Pro
CGG
[SRA]
>SRA1021810
SRR035083.312606
454 Sequencing (SRP001804)
343
416
+
Pro
CGG
[SRA]
>SRA1021857
SRR035083.319123
454 Sequencing (SRP001804)
291
218
-
Pro
CGG
[SRA]
>SRA1021859
SRR035083.319341
454 Sequencing (SRP001804)
264
191
-
Pro
CGG
[SRA]
>SRA1021959
SRR035083.332170
454 Sequencing (SRP001804)
191
118
-
Pro
CGG
[SRA]
>SRA1021995
SRR035083.336030
454 Sequencing (SRP001804)
166
239
+
Pro
CGG
[SRA]
>SRA1022005
SRR035083.338443
454 Sequencing (SRP001804)
381
454
+
Pro
CGG
[SRA]
>SRA1022051
SRR035083.346349
454 Sequencing (SRP001804)
172
245
+
Pro
CGG
[SRA]
>SRA1022057
SRR035083.346672
454 Sequencing (SRP001804)
451
378
-
Pro
CGG
[SRA]
>SRA1022152
SRR035083.359811
454 Sequencing (SRP001804)
433
360
-
Pro
CGG
[SRA]
>SRA1022234
SRR035083.372330
454 Sequencing (SRP001804)
15
88
+
Pro
CGG
[SRA]
>SRA1022419
SRR035083.403606
454 Sequencing (SRP001804)
329
256
-
Pro
CGG
[SRA]
>SRA1022558
SRR035083.423683
454 Sequencing (SRP001804)
250
177
-
Pro
CGG
[SRA]
>SRA1022678
SRR035083.440579
454 Sequencing (SRP001804)
87
14
-
Pro
CGG
[SRA]
>SRA1022705
SRR035083.444502
454 Sequencing (SRP001804)
220
147
-
Pro
CGG
[SRA]
>SRA1022849
SRR035083.473078
454 Sequencing (SRP001804)
50
123
+
Pro
CGG
[SRA]
>SRA1022877
SRR035083.477003
454 Sequencing (SRP001804)
170
97
-
Pro
CGG
[SRA]
>SRA1022894
SRR035083.480252
454 Sequencing (SRP001804)
219
146
-
Pro
CGG
[SRA]
>SRA1023011
SRR035083.504277
454 Sequencing (SRP001804)
262
337
+
Pro
CGG
[SRA]
>SRA1023038
SRR035083.510134
454 Sequencing (SRP001804)
419
346
-
Pro
CGG
[SRA]
>SRA1032485
SRR035088.23785
454 Sequencing (SRP001809)
64
137
+
Pro
CGG
[SRA]
>SRA1032725
SRR035088.87553
454 Sequencing (SRP001809)
188
261
+
Pro
CGG
[SRA]
>SRA1032969
SRR035088.141594
454 Sequencing (SRP001809)
258
185
-
Pro
CGG
[SRA]
>SRA1036152
SRR035089.456956
454 Sequencing (SRP001810)
328
401
+
Pro
CGG
[SRA]
>SRA1037255
SRR035090.103454
454 Sequencing (SRP001811)
316
243
-
Pro
CGG
[SRA]
>SRA1037279
SRR035090.106512
454 Sequencing (SRP001811)
62
135
+
Pro
CGG
[SRA]
>SRA1037331
SRR035090.117293
454 Sequencing (SRP001811)
246
320
+
Pro
CGG
[SRA]
>SRA1037395
SRR035090.127997
454 Sequencing (SRP001811)
194
267
+
Pro
CGG
[SRA]
>SRA1037546
SRR035090.151441
454 Sequencing (SRP001811)
317
244
-
Pro
CGG
[SRA]
>SRA1037611
SRR035090.163218
454 Sequencing (SRP001811)
98
171
+
Pro
CGG
[SRA]
>SRA1037676
SRR035090.172947
454 Sequencing (SRP001811)
195
268
+
Pro
CGG
[SRA]
>SRA1037680
SRR035090.173477
454 Sequencing (SRP001811)
241
314
+
Pro
CGG
[SRA]
>SRA1037727
SRR035090.181223
454 Sequencing (SRP001811)
147
74
-
Pro
CGG
[SRA]
>SRA1037731
SRR035090.181730
454 Sequencing (SRP001811)
414
341
-
Pro
CGG
[SRA]
>SRA1037746
SRR035090.187038
454 Sequencing (SRP001811)
516
443
-
Pro
CGG
[SRA]
>SRA1037848
SRR035090.204588
454 Sequencing (SRP001811)
146
73
-
Pro
CGG
[SRA]
>SRA1038128
SRR035090.249948
454 Sequencing (SRP001811)
141
68
-
Pro
CGG
[SRA]
>SRA1038316
SRR035090.285968
454 Sequencing (SRP001811)
170
243
+
Pro
CGG
[SRA]
>SRA1038347
SRR035090.289974
454 Sequencing (SRP001811)
140
67
-
Pro
CGG
[SRA]
>SRA1038362
SRR035090.291737
454 Sequencing (SRP001811)
21
94
+
Pro
CGG
[SRA]
>SRA1038367
SRR035090.292215
454 Sequencing (SRP001811)
356
283
-
Pro
CGG
[SRA]
>SRA1038545
SRR035090.325249
454 Sequencing (SRP001811)
354
427
+
Pro
CGG
[SRA]
>SRA1038610
SRR035090.336214
454 Sequencing (SRP001811)
309
236
-
Pro
CGG
[SRA]
>SRA1038625
SRR035090.338776
454 Sequencing (SRP001811)
170
243
+
Pro
CGG
[SRA]
>SRA1038689
SRR035090.350279
454 Sequencing (SRP001811)
141
68
-
Pro
CGG
[SRA]
>SRA1039030
SRR035090.410699
454 Sequencing (SRP001811)
229
156
-
Pro
CGG
[SRA]
>SRA1039077
SRR035090.420535
454 Sequencing (SRP001811)
221
294
+
Pro
CGG
[SRA]
>SRA1039156
SRR035090.433214
454 Sequencing (SRP001811)
157
230
+
Pro
CGG
[SRA]
>SRA1039202
SRR035090.442685
454 Sequencing (SRP001811)
139
66
-
Pro
CGG
[SRA]
>SRA1039287
SRR035090.458695
454 Sequencing (SRP001811)
171
244
+
Pro
CGG
[SRA]
>SRA1039289
SRR035090.459451
454 Sequencing (SRP001811)
30
103
+
Pro
CGG
[SRA]
>SRA1039296
SRR035090.460955
454 Sequencing (SRP001811)
170
243
+
Pro
CGG
[SRA]
>SRA1039311
SRR035090.464945
454 Sequencing (SRP001811)
170
243
+
Pro
CGG
[SRA]
>SRA1039347
SRR035090.473552
454 Sequencing (SRP001811)
211
138
-
Pro
CGG
[SRA]
>SRA1039365
SRR035090.478995
454 Sequencing (SRP001811)
258
331
+
Pro
CGG
[SRA]
>SRA1039396
SRR035090.483090
454 Sequencing (SRP001811)
38
111
+
Pro
CGG
[SRA]
>SRA1039445
SRR035090.493370
454 Sequencing (SRP001811)
9
82
+
Pro
CGG
[SRA]
>SRA1039453
SRR035090.495547
454 Sequencing (SRP001811)
30
103
+
Pro
CGG
[SRA]
>SRA1039528
SRR035090.509061
454 Sequencing (SRP001811)
57
130
+
Pro
CGG
[SRA]
>SRA1039611
SRR035090.529310
454 Sequencing (SRP001811)
22
95
+
Pro
CGG
[SRA]
>SRA1039656
SRR035090.537596
454 Sequencing (SRP001811)
45
118
+
Pro
CGG
[SRA]
>SRA1039689
SRR035090.546000
454 Sequencing (SRP001811)
223
150
-
Pro
CGG
[SRA]
>SRA1039726
SRR035090.554305
454 Sequencing (SRP001811)
21
94
+
Pro
CGG
[SRA]
>SRA1039873
SRR035090.588790
454 Sequencing (SRP001811)
309
236
-
Pro
CGG
[SRA]
>SRA1039888
SRR035090.592906
454 Sequencing (SRP001811)
212
285
+
Pro
CGG
[SRA]
>SRA1039913
SRR035090.600864
454 Sequencing (SRP001811)
188
261
+
Pro
CGG
[SRA]
>SRA1039965
SRR035090.615230
454 Sequencing (SRP001811)
169
243
+
Pro
CGG
[SRA]
>SRA1045277
SRR035093.51815
454 Sequencing (SRP001814)
61
134
+
Pro
CGG
[SRA]
>SRA1050583
SRR035095.296534
454 Sequencing (SRP001816)
82
155
+
Pro
CGG
[SRA]
>SRA1053543
SRR035098.433512
454 Sequencing (SRP001819)
82
155
+
Pro
CGG
[SRA]
>SRA1053807
SRR035098.501458
454 Sequencing (SRP001819)
82
155
+
Pro
CGG
[SRA]
>SRA1054104
SRR035099.57663
454 Sequencing (SRP001820)
158
85
-
Pro
CGG
[SRA]
>SRA1054166
SRR035099.74421
454 Sequencing (SRP001820)
503
430
-
Pro
CGG
[SRA]
>SRA1054386
SRR035099.120700
454 Sequencing (SRP001820)
117
44
-
Pro
CGG
[SRA]
>SRA1054441
SRR035099.133547
454 Sequencing (SRP001820)
203
130
-
Pro
CGG
[SRA]
>SRA1054602
SRR035099.171058
454 Sequencing (SRP001820)
238
311
+
Pro
CGG
[SRA]
>SRA1054635
SRR035099.180282
454 Sequencing (SRP001820)
255
182
-
Pro
CGG
[SRA]
>SRA1054640
SRR035099.181264
454 Sequencing (SRP001820)
453
380
-
Pro
CGG
[SRA]
>W1610977631
LVWG01000018
Chlorobiota
Pelodictyon luteolum [LVWG]
66695
66622
-
Pro
CGG
[ENA]
¡û
Identical group No.548007 (5 seq.)
>WENV170608211
FUWD010902775
[FUWD] metagenome; unknown
493
568
+
Pro
CGG
[ENA]
¢þ
>SRA1041599
SRR035091.268204
454 Sequencing (SRP001812)
62
135
+
Pro
CGG
[SRA]
>SRA1048284
SRR035094.139102
454 Sequencing (SRP001815)
308
383
+
Pro
CGG
[SRA]
>SRA1049546
SRR035095.94504
454 Sequencing (SRP001816)
227
302
+
Pro
CGG
[SRA]
>SRA1049805
SRR035095.141230
454 Sequencing (SRP001816)
227
302
+
Pro
CGG
[SRA]
Identical group No.548427 (3 seq.)
>WENV170612813
FUWD012695385
[FUWD] metagenome; unknown
87
12
-
Pro
CGG
[ENA]
¢þ
>SRA1049863
SRR035095.149594
454 Sequencing (SRP001816)
97
22
-
Pro
CGG
[SRA]
>SRA1050506
SRR035095.278670
454 Sequencing (SRP001816)
97
22
-
Pro
CGG
[SRA]
Identical group No.711135 (2 seq.)
>WENV170612851
FUWD012703373
[FUWD] metagenome; unknown
74
3
-
Pro
CGG
[ENA]
¢þ
>SRA1050698
SRR035095.330128
454 Sequencing (SRP001816)
282
211
-
Pro
CGG
[SRA]
Identical group No.720442 (1 seq.)
>SRA1050111
SRR035095.194721
454 Sequencing (SRP001816)
70
144
+
Pro
CGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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