This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = CGT
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358949 (3 seq.)
>WENV170626890
FUWD013229979
[FUWD] metagenome; unknown
10620
10546
-
Thr
CGT
[ENA]
¢þ
>SRA1032884
SRR035088.121618
454 Sequencing (SRP001809)
84
158
+
Thr
CGT
[SRA]
>SRA1049664
SRR035095.113026
454 Sequencing (SRP001816)
56
130
+
Thr
CGT
[SRA]
Identical group No.372231 (3 seq.)
>WENV180285973
OBID01871445
[OBID] metagenome; sludge
159
85
-
Thr
CGT
[ENA]
¢þ
>SRA1050568
SRR035095.294986
454 Sequencing (SRP001816)
141
67
-
Thr
CGT
[SRA]
>C10110462
CP001848
Planctomycetota
Pirellula staleyi DSM 6068 [CP001848]
5189522
5189448
-
Thr
CGT
[Ensembl]
¡û
Identical group No.453199 (30 seq.)
>W131216791
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
3106469
3106544
+
Thr
CGT
[ENA]
¡û
>WENV170615854
FUWD012870435
[FUWD] metagenome; unknown
1030
955
-
Thr
CGT
[ENA]
¢þ
>WENV170619764
FUWD013020663
[FUWD] metagenome; unknown
10639
10714
+
Thr
CGT
[ENA]
¢þ
>WENV170627885
FUWD013238952
[FUWD] metagenome; unknown
10639
10714
+
Thr
CGT
[ENA]
¢þ
>W141557286
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
3698733
3698808
+
Thr
CGT
[ENA]
¡û
>SRA1018082
SRR035082.237206
454 Sequencing (SRP001803)
300
375
+
Thr
CGT
[SRA]
>SRA1025445
SRR035085.8024
454 Sequencing (SRP001806)
220
295
+
Thr
CGT
[SRA]
>SRA1025494
SRR035085.24925
454 Sequencing (SRP001806)
36
111
+
Thr
CGT
[SRA]
>SRA1025873
SRR035085.99388
454 Sequencing (SRP001806)
39
114
+
Thr
CGT
[SRA]
>SRA1025904
SRR035085.105833
454 Sequencing (SRP001806)
39
114
+
Thr
CGT
[SRA]
>SRA1025925
SRR035085.111110
454 Sequencing (SRP001806)
39
114
+
Thr
CGT
[SRA]
>SRA1026704
SRR035085.265477
454 Sequencing (SRP001806)
41
116
+
Thr
CGT
[SRA]
>SRA1026812
SRR035085.297665
454 Sequencing (SRP001806)
172
97
-
Thr
CGT
[SRA]
>SRA1030236
SRR035087.247350
454 Sequencing (SRP001808)
234
159
-
Thr
CGT
[SRA]
>SRA1030306
SRR035087.259780
454 Sequencing (SRP001808)
56
131
+
Thr
CGT
[SRA]
>SRA1030668
SRR035087.311778
454 Sequencing (SRP001808)
25
100
+
Thr
CGT
[SRA]
>SRA1030742
SRR035087.324151
454 Sequencing (SRP001808)
234
159
-
Thr
CGT
[SRA]
>SRA1031082
SRR035087.370112
454 Sequencing (SRP001808)
50
125
+
Thr
CGT
[SRA]
>SRA1031596
SRR035087.456542
454 Sequencing (SRP001808)
25
100
+
Thr
CGT
[SRA]
>SRA1033703
SRR035088.329437
454 Sequencing (SRP001809)
228
303
+
Thr
CGT
[SRA]
>SRA1034938
SRR035089.202767
454 Sequencing (SRP001810)
125
200
+
Thr
CGT
[SRA]
>SRA1035533
SRR035089.325960
454 Sequencing (SRP001810)
127
202
+
Thr
CGT
[SRA]
>SRA1035850
SRR035089.388537
454 Sequencing (SRP001810)
128
203
+
Thr
CGT
[SRA]
>SRA1036387
SRR035089.508669
454 Sequencing (SRP001810)
150
75
-
Thr
CGT
[SRA]
>SRA1047782
SRR035094.41030
454 Sequencing (SRP001815)
501
426
-
Thr
CGT
[SRA]
>SRA1048079
SRR035094.104499
454 Sequencing (SRP001815)
233
158
-
Thr
CGT
[SRA]
>SRA1048290
SRR035094.140539
454 Sequencing (SRP001815)
189
264
+
Thr
CGT
[SRA]
>SRA1048488
SRR035094.185236
454 Sequencing (SRP001815)
53
128
+
Thr
CGT
[SRA]
>SRA1049649
SRR035095.110989
454 Sequencing (SRP001816)
183
108
-
Thr
CGT
[SRA]
>SRA1050214
SRR035095.213942
454 Sequencing (SRP001816)
152
227
+
Thr
CGT
[SRA]
Identical group No.453506 (8 seq.)
>WENV170618986
FUWD012995007
[FUWD] metagenome; unknown
439
514
+
Thr
CGT
[ENA]
¢þ
>WENV170619089
FUWD012999139
[FUWD] metagenome; unknown
363
438
+
Thr
CGT
[ENA]
¢þ
>SRA1033421
SRR035088.253022
454 Sequencing (SRP001809)
299
374
+
Thr
CGT
[SRA]
>SRA1034117
SRR035088.493381
454 Sequencing (SRP001809)
114
39
-
Thr
CGT
[SRA]
>SRA1034421
SRR035089.89364
454 Sequencing (SRP001810)
137
62
-
Thr
CGT
[SRA]
>SRA1035116
SRR035089.240527
454 Sequencing (SRP001810)
71
146
+
Thr
CGT
[SRA]
>SRA1035648
SRR035089.349473
454 Sequencing (SRP001810)
72
147
+
Thr
CGT
[SRA]
>SRA1050101
SRR035095.192206
454 Sequencing (SRP001816)
136
61
-
Thr
CGT
[SRA]
Identical group No.453562 (3 seq.)
>WENV170611479
FUWD012327618
[FUWD] metagenome; unknown
191
116
-
Thr
CGT
[ENA]
¢þ
>SRA1034659
SRR035089.146773
454 Sequencing (SRP001810)
242
317
+
Thr
CGT
[SRA]
>SRA1049971
SRR035095.170376
454 Sequencing (SRP001816)
58
131
+
Thr
CGT
[SRA]
Identical group No.453699 (4 seq.)
>WENV170605050
FUWD010444031
[FUWD] metagenome; unknown
803
875
+
Thr
CGT
[ENA]
¢þ
>SRA1035428
SRR035089.302199
454 Sequencing (SRP001810)
98
26
-
Thr
CGT
[SRA]
>SRA1049374
SRR035095.66160
454 Sequencing (SRP001816)
515
443
-
Thr
CGT
[SRA]
>SRA1054282
SRR035099.99680
454 Sequencing (SRP001820)
314
386
+
Thr
CGT
[SRA]
Identical group No.453813 (8 seq.)
>WENV170620630
FUWD013035640
[FUWD] metagenome; unknown
3599
3671
+
Thr
CGT
[ENA]
¢þ
>WENV170628777
FUWD013252954
[FUWD] metagenome; unknown
3599
3671
+
Thr
CGT
[ENA]
¢þ
>SRA1032531
SRR035088.39575
454 Sequencing (SRP001809)
45
117
+
Thr
CGT
[SRA]
>SRA1036165
SRR035089.460315
454 Sequencing (SRP001810)
34
106
+
Thr
CGT
[SRA]
>SRA1040857
SRR035091.159909
454 Sequencing (SRP001812)
121
193
+
Thr
CGT
[SRA]
>SRA1042385
SRR035091.380298
454 Sequencing (SRP001812)
199
127
-
Thr
CGT
[SRA]
>SRA1042568
SRR035091.409855
454 Sequencing (SRP001812)
180
252
+
Thr
CGT
[SRA]
>SRA1049099
SRR035095.19025
454 Sequencing (SRP001816)
332
404
+
Thr
CGT
[SRA]
Identical group No.466412 (3 seq.)
>WENV180086226
MPMD02439269
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
6851
6926
+
Thr
CGT
[ENA]
¢þ
>WENV183798309
PVBE010406819
[PVBE] marine metagenome; water
49559
49484
-
Thr
CGT
[ENA]
¢þ
>SRA1050456
SRR035095.267795
454 Sequencing (SRP001816)
504
429
-
Thr
CGT
[SRA]
Identical group No.496788 (6 seq.)
>WENV181206328
OFAT01006467
[OFAT] metagenome; hydrothermal vent
559
484
-
Thr
CGT
[ENA]
¢þ
>WENV181207275
OFAY01008652
[OFAY] metagenome; hydrothermal vent
645
720
+
Thr
CGT
[ENA]
¢þ
>WENV181224079
OFDD01017767
[OFDD] metagenome; hydrothermal vent
249
174
-
Thr
CGT
[ENA]
¢þ
>WENV170570537
FLOH01000009
[FLOH] marine metagenome; water
509922
509847
-
Thr
CGT
[ENA]
¢þ
>WENV170606073
FUWD010601233
[FUWD] metagenome; unknown
55
130
+
Thr
CGT
[ENA]
¢þ
>SRA1049760
SRR035095.135511
454 Sequencing (SRP001816)
469
394
-
Thr
CGT
[SRA]
Identical group No.563055 (1 seq.)
>SRA1049054
SRR035095.9919
454 Sequencing (SRP001816)
240
165
-
Thr
CGT
[SRA]
Identical group No.563061 (1 seq.)
>SRA1049142
SRR035095.27353
454 Sequencing (SRP001816)
315
388
+
Thr
CGT
[SRA]
Identical group No.563067 (1 seq.)
>SRA1049232
SRR035095.41593
454 Sequencing (SRP001816)
181
256
+
Thr
CGT
[SRA]
Identical group No.563093 (1 seq.)
>SRA1049589
SRR035095.100080
454 Sequencing (SRP001816)
394
469
+
Thr
CGT
[SRA]
Identical group No.563141 (1 seq.)
>SRA1050373
SRR035095.247087
454 Sequencing (SRP001816)
160
232
+
Thr
CGT
[SRA]
Identical group No.563143 (1 seq.)
>SRA1050440
SRR035095.263238
454 Sequencing (SRP001816)
196
268
+
Thr
CGT
[SRA]
Identical group No.563147 (1 seq.)
>SRA1050497
SRR035095.276397
454 Sequencing (SRP001816)
82
157
+
Thr
CGT
[SRA]
Identical group No.563150 (1 seq.)
>SRA1050566
SRR035095.294217
454 Sequencing (SRP001816)
120
47
-
Thr
CGT
[SRA]
Identical group No.672590 (14 seq.)
>WENV170626811
FUWD013229674
[FUWD] metagenome; unknown
5297
5223
-
Thr
CGT
[ENA]
¢þ
>SRA1017759
SRR035082.192705
454 Sequencing (SRP001803)
372
446
+
Thr
CGT
[SRA]
>SRA1031676
SRR035087.468918
454 Sequencing (SRP001808)
170
244
+
Thr
CGT
[SRA]
>SRA1040591
SRR035091.120212
454 Sequencing (SRP001812)
135
209
+
Thr
CGT
[SRA]
>SRA1040823
SRR035091.154234
454 Sequencing (SRP001812)
321
395
+
Thr
CGT
[SRA]
>SRA1040878
SRR035091.163147
454 Sequencing (SRP001812)
236
162
-
Thr
CGT
[SRA]
>SRA1041922
SRR035091.315870
454 Sequencing (SRP001812)
192
266
+
Thr
CGT
[SRA]
>SRA1042138
SRR035091.344232
454 Sequencing (SRP001812)
272
198
-
Thr
CGT
[SRA]
>SRA1043225
SRR035092.76755
454 Sequencing (SRP001813)
175
101
-
Thr
CGT
[SRA]
>SRA1044040
SRR035092.212704
454 Sequencing (SRP001813)
82
8
-
Thr
CGT
[SRA]
>SRA1044105
SRR035092.224577
454 Sequencing (SRP001813)
82
8
-
Thr
CGT
[SRA]
>SRA1044191
SRR035092.239048
454 Sequencing (SRP001813)
175
101
-
Thr
CGT
[SRA]
>SRA1044340
SRR035092.262601
454 Sequencing (SRP001813)
428
354
-
Thr
CGT
[SRA]
>SRA1050496
SRR035095.276387
454 Sequencing (SRP001816)
258
184
-
Thr
CGT
[SRA]
Identical group No.711040 (3 seq.)
>WENV170611703
FUWD012378069
[FUWD] metagenome; unknown
93
21
-
Thr
CGT
[ENA]
¢þ
>SRA1019756
SRR035082.520358
454 Sequencing (SRP001803)
93
21
-
Thr
CGT
[SRA]
>SRA1050253
SRR035095.222418
454 Sequencing (SRP001816)
237
309
+
Thr
CGT
[SRA]
Identical group No.711557 (8 seq.)
>WENV170626780
FUWD013229435
[FUWD] metagenome; unknown
1267
1339
+
Thr
CGT
[ENA]
¢þ
>SRA1040163
SRR035091.50495
454 Sequencing (SRP001812)
212
140
-
Thr
CGT
[SRA]
>SRA1040940
SRR035091.171262
454 Sequencing (SRP001812)
335
263
-
Thr
CGT
[SRA]
>SRA1041027
SRR035091.184721
454 Sequencing (SRP001812)
198
126
-
Thr
CGT
[SRA]
>SRA1042246
SRR035091.361723
454 Sequencing (SRP001812)
102
174
+
Thr
CGT
[SRA]
>SRA1042358
SRR035091.376844
454 Sequencing (SRP001812)
47
119
+
Thr
CGT
[SRA]
>SRA1042529
SRR035091.402962
454 Sequencing (SRP001812)
102
174
+
Thr
CGT
[SRA]
>SRA1049280
SRR035095.49633
454 Sequencing (SRP001816)
303
375
+
Thr
CGT
[SRA]
Identical group No.720396 (2 seq.)
>WENV170016791
BARS01009964
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
338
267
-
Thr
CGT
[ENA]
¢þ
>SRA1049205
SRR035095.37832
454 Sequencing (SRP001816)
165
236
+
Thr
CGT
[SRA]
Identical group No.720464 (1 seq.)
>SRA1050667
SRR035095.319082
454 Sequencing (SRP001816)
141
215
+
Thr
CGT
[SRA]
Identical group No.809632 (1 seq.)
>SRA1050649
SRR035095.313088
454 Sequencing (SRP001816)
200
270
+
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK