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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = CTC
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240920 (7 seq.)
>WENV170622848
FUWD013123572
[FUWD] metagenome; unknown
1324
1401
+
Glu
CTC
[ENA]
¢þ
>WENV170626916
FUWD013230053
[FUWD] metagenome; unknown
4
81
+
Glu
CTC
[ENA]
¢þ
>WENV170631066
FUWD013337122
[FUWD] metagenome; unknown
1324
1401
+
Glu
CTC
[ENA]
¢þ
>SRA1032249
SRR035087.587382
454 Sequencing (SRP001808)
359
282
-
Glu
CTC
[SRA]
>SRA1036091
SRR035089.444392
454 Sequencing (SRP001810)
180
103
-
Glu
CTC
[SRA]
>SRA1040166
SRR035091.51999
454 Sequencing (SRP001812)
175
252
+
Glu
CTC
[SRA]
>SRA1049645
SRR035095.110608
454 Sequencing (SRP001816)
95
18
-
Glu
CTC
[SRA]
Identical group No.254148 (3 seq.)
>WENV170612199
FUWD012532791
[FUWD] metagenome; unknown
38
114
+
Glu
CTC
[ENA]
¢þ
>SRA1033548
SRR035088.286607
454 Sequencing (SRP001809)
38
114
+
Glu
CTC
[SRA]
>SRA1049586
SRR035095.99009
454 Sequencing (SRP001816)
280
204
-
Glu
CTC
[SRA]
Identical group No.256313 (1 seq.)
>SRA1049415
SRR035095.74195
454 Sequencing (SRP001816)
174
251
+
Glu
CTC
[SRA]
Identical group No.256321 (1 seq.)
>SRA1050012
SRR035095.176850
454 Sequencing (SRP001816)
196
119
-
Glu
CTC
[SRA]
Identical group No.484321 (4 seq.)
>WENV170625883
FUWD013208264
[FUWD] metagenome; unknown
1699
1625
-
Glu
CTC
[ENA]
¢þ
>WENV170634100
FUWD013409884
[FUWD] metagenome; unknown
1699
1625
-
Glu
CTC
[ENA]
¢þ
>SRA1030591
SRR035087.301302
454 Sequencing (SRP001808)
502
428
-
Glu
CTC
[SRA]
>SRA1049437
SRR035095.77410
454 Sequencing (SRP001816)
193
267
+
Glu
CTC
[SRA]
Identical group No.547696 (3 seq.)
>WENV170603360
FUWD010305329
[FUWD] metagenome; unknown
610
685
+
Glu
CTC
[ENA]
¢þ
>SRA1047991
SRR035094.83422
454 Sequencing (SRP001815)
84
11
-
Glu
CTC
[SRA]
>SRA1049395
SRR035095.70031
454 Sequencing (SRP001816)
128
203
+
Glu
CTC
[SRA]
Identical group No.548428 (3 seq.)
>WENV170612823
FUWD012696879
[FUWD] metagenome; unknown
120
195
+
Glu
CTC
[ENA]
¢þ
>SRA1050001
SRR035095.174447
454 Sequencing (SRP001816)
130
205
+
Glu
CTC
[SRA]
>SRA1050584
SRR035095.296684
454 Sequencing (SRP001816)
130
205
+
Glu
CTC
[SRA]
Identical group No.548920 (5 seq.)
>WENV170625365
FUWD013196638
[FUWD] metagenome; unknown
1397
1472
+
Glu
CTC
[ENA]
¢þ
>WENV170633605
FUWD013399285
[FUWD] metagenome; unknown
1397
1472
+
Glu
CTC
[ENA]
¢þ
>SRA1033048
SRR035088.158532
454 Sequencing (SRP001809)
64
139
+
Glu
CTC
[SRA]
>SRA1033567
SRR035088.290067
454 Sequencing (SRP001809)
400
325
-
Glu
CTC
[SRA]
>SRA1049928
SRR035095.162444
454 Sequencing (SRP001816)
47
122
+
Glu
CTC
[SRA]
Identical group No.563070 (1 seq.)
>SRA1049282
SRR035095.49769
454 Sequencing (SRP001816)
445
517
+
Glu
CTC
[SRA]
Identical group No.563128 (1 seq.)
>SRA1050154
SRR035095.201755
454 Sequencing (SRP001816)
130
58
-
Glu
CTC
[SRA]
Identical group No.563135 (1 seq.)
>SRA1050281
SRR035095.229454
454 Sequencing (SRP001816)
401
328
-
Glu
CTC
[SRA]
Identical group No.563139 (1 seq.)
>SRA1050307
SRR035095.234437
454 Sequencing (SRP001816)
278
203
-
Glu
CTC
[SRA]
Identical group No.563146 (1 seq.)
>SRA1050489
SRR035095.273562
454 Sequencing (SRP001816)
197
122
-
Glu
CTC
[SRA]
Identical group No.563160 (1 seq.)
>SRA1050700
SRR035095.330295
454 Sequencing (SRP001816)
132
207
+
Glu
CTC
[SRA]
Identical group No.654278 (13 seq.)
>WENV181412628
OGCK01003108
[OGCK] hot springs metagenome; hot spring sediment
2979
3053
+
Glu
CTC
[ENA]
¢þ
>WENV183514318
OMKS01015995
[OMKS] sediment metagenome; hot spring sediment
3103
3029
-
Glu
CTC
[ENA]
¢þ
>WENV170619704
FUWD013019407
[FUWD] metagenome; unknown
5232
5306
+
Glu
CTC
[ENA]
¢þ
>WENV170627825
FUWD013237795
[FUWD] metagenome; unknown
5232
5306
+
Glu
CTC
[ENA]
¢þ
>SRA1025802
SRR035085.86401
454 Sequencing (SRP001806)
227
301
+
Glu
CTC
[SRA]
>SRA1030947
SRR035087.353014
454 Sequencing (SRP001808)
120
46
-
Glu
CTC
[SRA]
>SRA1031109
SRR035087.375194
454 Sequencing (SRP001808)
94
20
-
Glu
CTC
[SRA]
>SRA1048190
SRR035094.125621
454 Sequencing (SRP001815)
89
15
-
Glu
CTC
[SRA]
>SRA1048357
SRR035094.155999
454 Sequencing (SRP001815)
516
442
-
Glu
CTC
[SRA]
>SRA1048631
SRR035094.212526
454 Sequencing (SRP001815)
379
305
-
Glu
CTC
[SRA]
>SRA1049850
SRR035095.147453
454 Sequencing (SRP001816)
400
326
-
Glu
CTC
[SRA]
>SRA1050150
SRR035095.201207
454 Sequencing (SRP001816)
401
327
-
Glu
CTC
[SRA]
>SRA1050206
SRR035095.212049
454 Sequencing (SRP001816)
514
440
-
Glu
CTC
[SRA]
Identical group No.654509 (3 seq.)
>WENV170612817
FUWD012695914
[FUWD] metagenome; unknown
102
176
+
Glu
CTC
[ENA]
¢þ
>SRA1035194
SRR035089.257432
454 Sequencing (SRP001810)
101
175
+
Glu
CTC
[SRA]
>SRA1049910
SRR035095.158260
454 Sequencing (SRP001816)
221
295
+
Glu
CTC
[SRA]
Identical group No.654599 (27 seq.)
>WENV170626768
FUWD013229350
[FUWD] metagenome; unknown
2293
2367
+
Glu
CTC
[ENA]
¢þ
>SRA1017537
SRR035082.158122
454 Sequencing (SRP001803)
71
145
+
Glu
CTC
[SRA]
>SRA1019306
SRR035082.433029
454 Sequencing (SRP001803)
127
198
+
Glu
CTC
[SRA]
>SRA1036177
SRR035089.463450
454 Sequencing (SRP001810)
136
210
+
Glu
CTC
[SRA]
>SRA1036623
SRR035089.565542
454 Sequencing (SRP001810)
254
180
-
Glu
CTC
[SRA]
>SRA1040560
SRR035091.115345
454 Sequencing (SRP001812)
371
297
-
Glu
CTC
[SRA]
>SRA1040982
SRR035091.177378
454 Sequencing (SRP001812)
31
105
+
Glu
CTC
[SRA]
>SRA1041075
SRR035091.192644
454 Sequencing (SRP001812)
143
217
+
Glu
CTC
[SRA]
>SRA1041829
SRR035091.301289
454 Sequencing (SRP001812)
18
92
+
Glu
CTC
[SRA]
>SRA1042238
SRR035091.360315
454 Sequencing (SRP001812)
230
156
-
Glu
CTC
[SRA]
>SRA1042439
SRR035091.386795
454 Sequencing (SRP001812)
95
21
-
Glu
CTC
[SRA]
>SRA1042825
SRR035091.451214
454 Sequencing (SRP001812)
151
77
-
Glu
CTC
[SRA]
>SRA1042898
SRR035091.463246
454 Sequencing (SRP001812)
351
277
-
Glu
CTC
[SRA]
>SRA1043171
SRR035092.63100
454 Sequencing (SRP001813)
166
240
+
Glu
CTC
[SRA]
>SRA1048461
SRR035094.178337
454 Sequencing (SRP001815)
22
96
+
Glu
CTC
[SRA]
>SRA1048582
SRR035094.203213
454 Sequencing (SRP001815)
169
243
+
Glu
CTC
[SRA]
>SRA1048947
SRR035094.295108
454 Sequencing (SRP001815)
254
328
+
Glu
CTC
[SRA]
>SRA1048965
SRR035094.298170
454 Sequencing (SRP001815)
255
329
+
Glu
CTC
[SRA]
>SRA1049717
SRR035095.124322
454 Sequencing (SRP001816)
397
323
-
Glu
CTC
[SRA]
>SRA1049941
SRR035095.163761
454 Sequencing (SRP001816)
252
326
+
Glu
CTC
[SRA]
>SRA1049970
SRR035095.170264
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050172
SRR035095.205889
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050396
SRR035095.252523
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050481
SRR035095.271638
454 Sequencing (SRP001816)
200
126
-
Glu
CTC
[SRA]
>SRA1050530
SRR035095.283863
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050547
SRR035095.289269
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050646
SRR035095.312598
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
Identical group No.711365 (4 seq.)
>WENV170621808
FUWD013073804
[FUWD] metagenome; unknown
416
342
-
Glu
CTC
[ENA]
¢þ
>WENV170630003
FUWD013289440
[FUWD] metagenome; unknown
416
342
-
Glu
CTC
[ENA]
¢þ
>SRA1021878
SRR035083.322490
454 Sequencing (SRP001804)
228
302
+
Glu
CTC
[SRA]
>SRA1050562
SRR035095.293422
454 Sequencing (SRP001816)
355
281
-
Glu
CTC
[SRA]
Identical group No.711482 (5 seq.)
>WENV170623666
FUWD013164293
[FUWD] metagenome; unknown
1011
937
-
Glu
CTC
[ENA]
¢þ
>WENV170631947
FUWD013372959
[FUWD] metagenome; unknown
1011
937
-
Glu
CTC
[ENA]
¢þ
>SRA1016954
SRR035082.59080
454 Sequencing (SRP001803)
209
283
+
Glu
CTC
[SRA]
>SRA1019083
SRR035082.398823
454 Sequencing (SRP001803)
108
182
+
Glu
CTC
[SRA]
>SRA1050208
SRR035095.212517
454 Sequencing (SRP001816)
244
170
-
Glu
CTC
[SRA]
Identical group No.720398 (1 seq.)
>SRA1049224
SRR035095.40510
454 Sequencing (SRP001816)
251
177
-
Glu
CTC
[SRA]
Identical group No.720420 (1 seq.)
>SRA1049690
SRR035095.120307
454 Sequencing (SRP001816)
434
508
+
Glu
CTC
[SRA]
Identical group No.720448 (2 seq.)
>SRA1050268
SRR035095.225916
454 Sequencing (SRP001816)
63
137
+
Glu
CTC
[SRA]
>SRA1050639
SRR035095.311180
454 Sequencing (SRP001816)
65
139
+
Glu
CTC
[SRA]
Identical group No.720449 (1 seq.)
>SRA1050310
SRR035095.234840
454 Sequencing (SRP001816)
252
324
+
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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