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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = GAG
HIT:
35 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80337 (1 seq.)
>SRA1049178
SRR035095.33478
454 Sequencing (SRP001816)
123
209
+
Leu
GAG
[SRA]
Identical group No.80343 (1 seq.)
>SRA1049563
SRR035095.96614
454 Sequencing (SRP001816)
58
143
+
Leu
GAG
[SRA]
Identical group No.80350 (1 seq.)
>SRA1050180
SRR035095.206992
454 Sequencing (SRP001816)
122
207
+
Leu
GAG
[SRA]
Identical group No.80353 (1 seq.)
>SRA1050613
SRR035095.305951
454 Sequencing (SRP001816)
223
311
+
Leu
GAG
[SRA]
Identical group No.87096 (10 seq.)
>WENV170624864
FUWD013188183
[FUWD] metagenome; unknown
548
635
+
Leu
GAG
[ENA]
¢þ
>WENV170633130
FUWD013391978
[FUWD] metagenome; unknown
548
635
+
Leu
GAG
[ENA]
¢þ
>SRA1030081
SRR035087.224642
454 Sequencing (SRP001808)
131
218
+
Leu
GAG
[SRA]
>SRA1030887
SRR035087.343177
454 Sequencing (SRP001808)
111
24
-
Leu
GAG
[SRA]
>SRA1033407
SRR035088.248512
454 Sequencing (SRP001809)
125
212
+
Leu
GAG
[SRA]
>SRA1036249
SRR035089.480215
454 Sequencing (SRP001810)
297
384
+
Leu
GAG
[SRA]
>SRA1038331
SRR035090.289082
454 Sequencing (SRP001811)
335
422
+
Leu
GAG
[SRA]
>SRA1049361
SRR035095.63976
454 Sequencing (SRP001816)
305
218
-
Leu
GAG
[SRA]
>SRA1049771
SRR035095.136865
454 Sequencing (SRP001816)
306
219
-
Leu
GAG
[SRA]
>SRA1050109
SRR035095.194417
454 Sequencing (SRP001816)
281
368
+
Leu
GAG
[SRA]
Identical group No.87105 (7 seq.)
>WENV170622852
FUWD013123740
[FUWD] metagenome; unknown
406
321
-
Leu
GAG
[ENA]
¢þ
>WENV170631070
FUWD013337290
[FUWD] metagenome; unknown
406
321
-
Leu
GAG
[ENA]
¢þ
>SRA1036481
SRR035089.531684
454 Sequencing (SRP001810)
111
196
+
Leu
GAG
[SRA]
>SRA1043410
SRR035092.110344
454 Sequencing (SRP001813)
151
236
+
Leu
GAG
[SRA]
>SRA1049089
SRR035095.18252
454 Sequencing (SRP001816)
349
434
+
Leu
GAG
[SRA]
>SRA1049216
SRR035095.39326
454 Sequencing (SRP001816)
350
435
+
Leu
GAG
[SRA]
>SRA1049236
SRR035095.42479
454 Sequencing (SRP001816)
349
434
+
Leu
GAG
[SRA]
Identical group No.98585 (4 seq.)
>WENV170618769
FUWD012985740
[FUWD] metagenome; unknown
337
423
+
Leu
GAG
[ENA]
¢þ
>SRA1042109
SRR035091.339740
454 Sequencing (SRP001812)
310
396
+
Leu
GAG
[SRA]
>SRA1042547
SRR035091.406471
454 Sequencing (SRP001812)
115
29
-
Leu
GAG
[SRA]
>SRA1049711
SRR035095.123306
454 Sequencing (SRP001816)
444
358
-
Leu
GAG
[SRA]
Identical group No.100575 (1 seq.)
>SRA1050402
SRR035095.255370
454 Sequencing (SRP001816)
319
232
-
Leu
GAG
[SRA]
Identical group No.112570 (3 seq.)
>WENV170603368
FUWD010306016
[FUWD] metagenome; unknown
514
600
+
Leu
GAG
[ENA]
¢þ
>SRA1034614
SRR035089.137355
454 Sequencing (SRP001810)
73
159
+
Leu
GAG
[SRA]
>SRA1050320
SRR035095.236650
454 Sequencing (SRP001816)
288
374
+
Leu
GAG
[SRA]
Identical group No.112591 (6 seq.)
>WENV170603294
FUWD010299293
[FUWD] metagenome; unknown
474
388
-
Leu
GAG
[ENA]
¢þ
>WENV170605016
FUWD010441483
[FUWD] metagenome; unknown
561
475
-
Leu
GAG
[ENA]
¢þ
>SRA1029122
SRR035087.78137
454 Sequencing (SRP001808)
209
295
+
Leu
GAG
[SRA]
>SRA1033784
SRR035088.353947
454 Sequencing (SRP001809)
78
164
+
Leu
GAG
[SRA]
>SRA1035018
SRR035089.219903
454 Sequencing (SRP001810)
109
195
+
Leu
GAG
[SRA]
>SRA1049890
SRR035095.154948
454 Sequencing (SRP001816)
280
366
+
Leu
GAG
[SRA]
Identical group No.118379 (5 seq.)
>WENV170605125
FUWD010451742
[FUWD] metagenome; unknown
181
267
+
Leu
GAG
[ENA]
¢þ
>SRA1031935
SRR035087.515567
454 Sequencing (SRP001808)
164
78
-
Leu
GAG
[SRA]
>SRA1033321
SRR035088.223543
454 Sequencing (SRP001809)
234
148
-
Leu
GAG
[SRA]
>SRA1048997
SRR035094.307632
454 Sequencing (SRP001815)
132
46
-
Leu
GAG
[SRA]
>SRA1049993
SRR035095.173437
454 Sequencing (SRP001816)
57
143
+
Leu
GAG
[SRA]
Identical group No.131516 (2 seq.)
>WENV170601715
FUWD010189482
[FUWD] metagenome; unknown
4
88
+
Leu
GAG
[ENA]
¢þ
>SRA1049241
SRR035095.42921
454 Sequencing (SRP001816)
108
192
+
Leu
GAG
[SRA]
Identical group No.131715 (3 seq.)
>WENV170612798
FUWD012691593
[FUWD] metagenome; unknown
328
414
+
Leu
GAG
[ENA]
¢þ
>SRA1049535
SRR035095.93250
454 Sequencing (SRP001816)
338
424
+
Leu
GAG
[SRA]
>SRA1049667
SRR035095.113801
454 Sequencing (SRP001816)
339
425
+
Leu
GAG
[SRA]
Identical group No.131717 (4 seq.)
>WENV170612833
FUWD012699194
[FUWD] metagenome; unknown
124
40
-
Leu
GAG
[ENA]
¢þ
>SRA1016887
SRR035082.47455
454 Sequencing (SRP001803)
100
16
-
Leu
GAG
[SRA]
>SRA1050234
SRR035095.218208
454 Sequencing (SRP001816)
134
50
-
Leu
GAG
[SRA]
>SRA1050688
SRR035095.327101
454 Sequencing (SRP001816)
134
50
-
Leu
GAG
[SRA]
Identical group No.131828 (8 seq.)
>WENV170624453
FUWD013181970
[FUWD] metagenome; unknown
3116
3030
-
Leu
GAG
[ENA]
¢þ
>WENV170632740
FUWD013386831
[FUWD] metagenome; unknown
3116
3030
-
Leu
GAG
[ENA]
¢þ
>SRA1048019
SRR035094.91215
454 Sequencing (SRP001815)
72
158
+
Leu
GAG
[SRA]
>SRA1048255
SRR035094.135450
454 Sequencing (SRP001815)
161
247
+
Leu
GAG
[SRA]
>SRA1049577
SRR035095.97396
454 Sequencing (SRP001816)
259
345
+
Leu
GAG
[SRA]
>SRA1049609
SRR035095.104519
454 Sequencing (SRP001816)
350
264
-
Leu
GAG
[SRA]
>SRA1049722
SRR035095.126938
454 Sequencing (SRP001816)
368
454
+
Leu
GAG
[SRA]
>SRA1050601
SRR035095.299655
454 Sequencing (SRP001816)
150
236
+
Leu
GAG
[SRA]
Identical group No.134861 (1 seq.)
>SRA1049399
SRR035095.71216
454 Sequencing (SRP001816)
326
242
-
Leu
GAG
[SRA]
Identical group No.134865 (1 seq.)
>SRA1049612
SRR035095.104679
454 Sequencing (SRP001816)
71
157
+
Leu
GAG
[SRA]
Identical group No.134874 (1 seq.)
>SRA1050251
SRR035095.221665
454 Sequencing (SRP001816)
115
29
-
Leu
GAG
[SRA]
Identical group No.134875 (1 seq.)
>SRA1050399
SRR035095.254412
454 Sequencing (SRP001816)
367
279
-
Leu
GAG
[SRA]
Identical group No.165652 (5 seq.)
>WENV170605210
FUWD010458471
[FUWD] metagenome; unknown
471
556
+
Leu
GAG
[ENA]
¢þ
>WENV170694425
LGVD01054231
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
86
1
-
Leu
GAG
[ENA]
¢þ
>WENV170698986
LGVF01455492
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
411
496
+
Leu
GAG
[ENA]
¢þ
>SRA1049975
SRR035095.170633
454 Sequencing (SRP001816)
201
286
+
Leu
GAG
[SRA]
>SRA1050340
SRR035095.240929
454 Sequencing (SRP001816)
148
63
-
Leu
GAG
[SRA]
Identical group No.165813 (3 seq.)
>WENV170623603
FUWD013160023
[FUWD] metagenome; unknown
742
658
-
Leu
GAG
[ENA]
¢þ
>WENV170631880
FUWD013369518
[FUWD] metagenome; unknown
742
658
-
Leu
GAG
[ENA]
¢þ
>SRA1050590
SRR035095.297760
454 Sequencing (SRP001816)
246
162
-
Leu
GAG
[SRA]
Identical group No.167777 (1 seq.)
>SRA1049477
SRR035095.82976
454 Sequencing (SRP001816)
240
157
-
Leu
GAG
[SRA]
Identical group No.167778 (1 seq.)
>SRA1049512
SRR035095.88403
454 Sequencing (SRP001816)
549
464
-
Leu
GAG
[SRA]
Identical group No.167781 (1 seq.)
>SRA1049651
SRR035095.111354
454 Sequencing (SRP001816)
411
326
-
Leu
GAG
[SRA]
Identical group No.167784 (1 seq.)
>SRA1050123
SRR035095.195724
454 Sequencing (SRP001816)
259
344
+
Leu
GAG
[SRA]
Identical group No.167794 (1 seq.)
>SRA1050690
SRR035095.327401
454 Sequencing (SRP001816)
230
145
-
Leu
GAG
[SRA]
Identical group No.180261 (7 seq.)
>WENV170603348
FUWD010303991
[FUWD] metagenome; unknown
449
365
-
Leu
GAG
[ENA]
¢þ
>SRA1033075
SRR035088.167342
454 Sequencing (SRP001809)
38
122
+
Leu
GAG
[SRA]
>SRA1036414
SRR035089.515769
454 Sequencing (SRP001810)
189
105
-
Leu
GAG
[SRA]
>SRA1040906
SRR035091.167509
454 Sequencing (SRP001812)
236
320
+
Leu
GAG
[SRA]
>SRA1042242
SRR035091.360941
454 Sequencing (SRP001812)
236
320
+
Leu
GAG
[SRA]
>SRA1042390
SRR035091.381035
454 Sequencing (SRP001812)
235
321
+
Leu
GAG
[SRA]
>SRA1049473
SRR035095.82744
454 Sequencing (SRP001816)
447
363
-
Leu
GAG
[SRA]
Identical group No.198064 (4 seq.)
>W1710986631
LPUF01000001
Gammaproteobacteria
Methyloprofundus sedimenti [LPUF]
2096189
2096273
+
Leu
GAG
[ENA]
¡û
>WENV170604460
FUWD010400408
[FUWD] metagenome; unknown
351
435
+
Leu
GAG
[ENA]
¢þ
>SRA1050134
SRR035095.197559
454 Sequencing (SRP001816)
341
257
-
Leu
GAG
[SRA]
>W1710084664
BDMN01000139
Gammaproteobacteria
Bathymodiolus platifrons methanotrophic gill symbiont [BDMN]
7816
7732
-
Leu
GAG
[ENA]
¡û
Identical group No.198068 (2 seq.)
>WENV170605144
FUWD010454192
[FUWD] metagenome; unknown
140
224
+
Leu
GAG
[ENA]
¢þ
>SRA1049110
SRR035095.21711
454 Sequencing (SRP001816)
141
225
+
Leu
GAG
[SRA]
Identical group No.198106 (3 seq.)
>WENV170608216
FUWD010903174
[FUWD] metagenome; unknown
201
117
-
Leu
GAG
[ENA]
¢þ
>SRA1048538
SRR035094.196159
454 Sequencing (SRP001815)
211
127
-
Leu
GAG
[SRA]
>SRA1050011
SRR035095.176477
454 Sequencing (SRP001816)
60
144
+
Leu
GAG
[SRA]
Identical group No.198198 (3 seq.)
>WENV170612827
FUWD012697539
[FUWD] metagenome; unknown
148
230
+
Leu
GAG
[ENA]
¢þ
>SRA1044063
SRR035092.217077
454 Sequencing (SRP001813)
284
366
+
Leu
GAG
[SRA]
>SRA1050070
SRR035095.187037
454 Sequencing (SRP001816)
158
240
+
Leu
GAG
[SRA]
Identical group No.198213 (2 seq.)
>WENV170613299
FUWD012794235
[FUWD] metagenome; unknown
178
262
+
Leu
GAG
[ENA]
¢þ
>SRA1050170
SRR035095.204791
454 Sequencing (SRP001816)
124
40
-
Leu
GAG
[SRA]
Identical group No.201113 (1 seq.)
>SRA1050240
SRR035095.219433
454 Sequencing (SRP001816)
161
79
-
Leu
GAG
[SRA]
Identical group No.201114 (1 seq.)
>SRA1050354
SRR035095.242792
454 Sequencing (SRP001816)
90
172
+
Leu
GAG
[SRA]
Identical group No.222834 (3 seq.)
>WENV170607735
FUWD010853178
[FUWD] metagenome; unknown
88
171
+
Leu
GAG
[ENA]
¢þ
>SRA1050142
SRR035095.200187
454 Sequencing (SRP001816)
412
329
-
Leu
GAG
[SRA]
>SRA1050478
SRR035095.270888
454 Sequencing (SRP001816)
98
181
+
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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