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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = GCA
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335224 (3 seq.)
>WENV170572454
FLOH01000883
[FLOH] marine metagenome; water
23244
23320
+
Cys
GCA
[ENA]
¢þ
>WENV170572694
FLOH01001167
[FLOH] marine metagenome; water
36876
36950
+
Cys
GCA
[ENA]
¢þ
>SRA1050394
SRR035095.251769
454 Sequencing (SRP001816)
263
339
+
Cys
GCA
[SRA]
Identical group No.358802 (4 seq.)
>WENV170623121
FUWD013137134
[FUWD] metagenome; unknown
113
40
-
Cys
GCA
[ENA]
¢þ
>WENV170631360
FUWD013349944
[FUWD] metagenome; unknown
113
40
-
Cys
GCA
[ENA]
¢þ
>SRA1049492
SRR035095.86296
454 Sequencing (SRP001816)
395
322
-
Cys
GCA
[SRA]
>SRA1049543
SRR035095.94323
454 Sequencing (SRP001816)
123
50
-
Cys
GCA
[SRA]
Identical group No.453352 (9 seq.)
>W131193258
ASNW01000003
Unclassified
Parcubacteria bacterium SCGC AB-164-E21 OD1 bacterium SCGC AB-164-E21 [ASNW]
48427
48354
-
Cys
GCA
[ENA]
¡û
>WENV170623318
FUWD013145745
[FUWD] metagenome; unknown
12
85
+
Cys
GCA
[ENA]
¢þ
>WENV170623464
FUWD013152325
[FUWD] metagenome; unknown
420
495
+
Cys
GCA
[ENA]
¢þ
>WENV170631581
FUWD013357702
[FUWD] metagenome; unknown
12
85
+
Cys
GCA
[ENA]
¢þ
>WENV170631729
FUWD013363245
[FUWD] metagenome; unknown
420
495
+
Cys
GCA
[ENA]
¢þ
>SRA1026153
SRR035085.154098
454 Sequencing (SRP001806)
134
59
-
Cys
GCA
[SRA]
>SRA1040042
SRR035091.24600
454 Sequencing (SRP001812)
159
84
-
Cys
GCA
[SRA]
>SRA1040578
SRR035091.118404
454 Sequencing (SRP001812)
12
85
+
Cys
GCA
[SRA]
>SRA1049569
SRR035095.96931
454 Sequencing (SRP001816)
446
373
-
Cys
GCA
[SRA]
Identical group No.453427 (5 seq.)
>WENV170612560
FUWD012634260
[FUWD] metagenome; unknown
2
77
+
Cys
GCA
[ENA]
¢þ
>WENV170622828
FUWD013122686
[FUWD] metagenome; unknown
956
881
-
Cys
GCA
[ENA]
¢þ
>WENV170631046
FUWD013336253
[FUWD] metagenome; unknown
956
881
-
Cys
GCA
[ENA]
¢þ
>SRA1026651
SRR035085.249908
454 Sequencing (SRP001806)
192
267
+
Cys
GCA
[SRA]
>SRA1049126
SRR035095.25444
454 Sequencing (SRP001816)
50
125
+
Cys
GCA
[SRA]
Identical group No.453520 (14 seq.)
>WENV170627200
FUWD013231996
[FUWD] metagenome; unknown
5992
6064
+
Cys
GCA
[ENA]
¢þ
>WENV170632587
FUWD013384757
[FUWD] metagenome; unknown
5992
6064
+
Cys
GCA
[ENA]
¢þ
>SRA1018909
SRR035082.368689
454 Sequencing (SRP001803)
370
298
-
Cys
GCA
[SRA]
>SRA1032600
SRR035088.59759
454 Sequencing (SRP001809)
136
64
-
Cys
GCA
[SRA]
>SRA1033791
SRR035088.356215
454 Sequencing (SRP001809)
112
184
+
Cys
GCA
[SRA]
>SRA1034469
SRR035089.101875
454 Sequencing (SRP001810)
9
81
+
Cys
GCA
[SRA]
>SRA1034475
SRR035089.103913
454 Sequencing (SRP001810)
305
233
-
Cys
GCA
[SRA]
>SRA1039967
SRR035091.690
454 Sequencing (SRP001812)
158
86
-
Cys
GCA
[SRA]
>SRA1041543
SRR035091.258346
454 Sequencing (SRP001812)
62
134
+
Cys
GCA
[SRA]
>SRA1042158
SRR035091.347951
454 Sequencing (SRP001812)
216
288
+
Cys
GCA
[SRA]
>SRA1043871
SRR035092.188451
454 Sequencing (SRP001813)
162
234
+
Cys
GCA
[SRA]
>SRA1047669
SRR035094.17020
454 Sequencing (SRP001815)
57
129
+
Cys
GCA
[SRA]
>SRA1047792
SRR035094.42075
454 Sequencing (SRP001815)
58
130
+
Cys
GCA
[SRA]
>SRA1049725
SRR035095.127642
454 Sequencing (SRP001816)
244
172
-
Cys
GCA
[SRA]
Identical group No.453885 (4 seq.)
>WENV170608070
FUWD010889513
[FUWD] metagenome; unknown
265
193
-
Cys
GCA
[ENA]
¢þ
>SRA1036656
SRR035089.574544
454 Sequencing (SRP001810)
123
51
-
Cys
GCA
[SRA]
>SRA1041872
SRR035091.307998
454 Sequencing (SRP001812)
19
91
+
Cys
GCA
[SRA]
>SRA1050686
SRR035095.326346
454 Sequencing (SRP001816)
101
29
-
Cys
GCA
[SRA]
Identical group No.484108 (9 seq.)
>WENV170619663
FUWD013018718
[FUWD] metagenome; unknown
2093
2018
-
Cys
GCA
[ENA]
¢þ
>WENV170627780
FUWD013237156
[FUWD] metagenome; unknown
2093
2018
-
Cys
GCA
[ENA]
¢þ
>SRA1029187
SRR035087.89245
454 Sequencing (SRP001808)
474
399
-
Cys
GCA
[SRA]
>SRA1033512
SRR035088.276074
454 Sequencing (SRP001809)
119
194
+
Cys
GCA
[SRA]
>SRA1050008
SRR035095.175467
454 Sequencing (SRP001816)
336
261
-
Cys
GCA
[SRA]
>SRA1050058
SRR035095.185002
454 Sequencing (SRP001816)
121
46
-
Cys
GCA
[SRA]
>SRA1050323
SRR035095.237279
454 Sequencing (SRP001816)
390
465
+
Cys
GCA
[SRA]
>SRA1050561
SRR035095.292435
454 Sequencing (SRP001816)
323
248
-
Cys
GCA
[SRA]
>SRA1050587
SRR035095.296976
454 Sequencing (SRP001816)
138
63
-
Cys
GCA
[SRA]
Identical group No.484365 (7 seq.)
>WENV170625847
FUWD013207233
[FUWD] metagenome; unknown
1821
1746
-
Cys
GCA
[ENA]
¢þ
>WENV170634066
FUWD013408945
[FUWD] metagenome; unknown
1821
1746
-
Cys
GCA
[ENA]
¢þ
>SRA1030854
SRR035087.339540
454 Sequencing (SRP001808)
386
311
-
Cys
GCA
[SRA]
>SRA1032530
SRR035088.39268
454 Sequencing (SRP001809)
369
294
-
Cys
GCA
[SRA]
>SRA1033234
SRR035088.202038
454 Sequencing (SRP001809)
310
235
-
Cys
GCA
[SRA]
>SRA1033614
SRR035088.303056
454 Sequencing (SRP001809)
37
112
+
Cys
GCA
[SRA]
>SRA1049707
SRR035095.122164
454 Sequencing (SRP001816)
150
225
+
Cys
GCA
[SRA]
Identical group No.548800 (4 seq.)
>WENV170622782
FUWD013121028
[FUWD] metagenome; unknown
1444
1369
-
Cys
GCA
[ENA]
¢þ
>WENV170630995
FUWD013334784
[FUWD] metagenome; unknown
1444
1369
-
Cys
GCA
[ENA]
¢þ
>SRA1041761
SRR035091.289579
454 Sequencing (SRP001812)
219
294
+
Cys
GCA
[SRA]
>SRA1049935
SRR035095.162935
454 Sequencing (SRP001816)
338
263
-
Cys
GCA
[SRA]
Identical group No.654373 (3 seq.)
>WENV170611891
FUWD012430561
[FUWD] metagenome; unknown
79
153
+
Cys
GCA
[ENA]
¢þ
>SRA1026494
SRR035085.216326
454 Sequencing (SRP001806)
332
406
+
Cys
GCA
[SRA]
>SRA1049107
SRR035095.21321
454 Sequencing (SRP001816)
369
295
-
Cys
GCA
[SRA]
Identical group No.681801 (2 seq.)
>WENV183514941
OMKS01038793
[OMKS] sediment metagenome; hot spring sediment
1123
1195
+
Cys
GCA
[ENA]
¢þ
>SRA1049246
SRR035095.43800
454 Sequencing (SRP001816)
144
72
-
Cys
GCA
[SRA]
Identical group No.711134 (2 seq.)
>WENV170612847
FUWD012702031
[FUWD] metagenome; unknown
328
402
+
Cys
GCA
[ENA]
¢þ
>SRA1050534
SRR035095.284782
454 Sequencing (SRP001816)
339
413
+
Cys
GCA
[SRA]
Identical group No.720402 (1 seq.)
>SRA1049269
SRR035095.48274
454 Sequencing (SRP001816)
210
138
-
Cys
GCA
[SRA]
Identical group No.720413 (1 seq.)
>SRA1049465
SRR035095.82046
454 Sequencing (SRP001816)
57
131
+
Cys
GCA
[SRA]
Identical group No.720415 (1 seq.)
>SRA1049556
SRR035095.95466
454 Sequencing (SRP001816)
56
130
+
Cys
GCA
[SRA]
Identical group No.720434 (2 seq.)
>SRA1002448
SRR001324.8522
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
89
15
-
Cys
GCA
[SRA]
>SRA1049899
SRR035095.156435
454 Sequencing (SRP001816)
491
417
-
Cys
GCA
[SRA]
Identical group No.720454 (1 seq.)
>SRA1050417
SRR035095.258277
454 Sequencing (SRP001816)
338
264
-
Cys
GCA
[SRA]
Identical group No.720459 (1 seq.)
>SRA1050569
SRR035095.295089
454 Sequencing (SRP001816)
18
89
+
Cys
GCA
[SRA]
Identical group No.720460 (1 seq.)
>SRA1050600
SRR035095.298823
454 Sequencing (SRP001816)
82
9
-
Cys
GCA
[SRA]
Identical group No.779798 (27 seq.)
>W131157555
AQSK01000189
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
29934
29861
-
Cys
GCA
[ENA]
¡û
>W131157616
AQSM01000126
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
7533
7606
+
Cys
GCA
[ENA]
¡û
>W131157661
AQSO01000102
Unclassified
Cloacimonetes bacterium SCGC AAA252-D03 KSB1 bacterium SCGC AAA252-D03 [AQSO]
256
329
+
Cys
GCA
[ENA]
¡û
>W131192104
ASKM01000006
Unclassified
Cloacimonetes bacterium SCGC AAA252-N05 KSB1 bacterium SCGC AAA252-N05 [ASKM]
3872
3945
+
Cys
GCA
[ENA]
¡û
>W131192131
ASKO01000004
Unclassified
Cloacimonetes bacterium SCGC AAA252-M08 KSB1 bacterium SCGC AAA252-M08 [ASKO]
62570
62643
+
Cys
GCA
[ENA]
¡û
>W131192167
ASKQ01000009
Unclassified
Cloacimonetes bacterium SCGC AAA252-O17 KSB1 bacterium SCGC AAA252-O17 [ASKQ]
1963
2036
+
Cys
GCA
[ENA]
¡û
>W131192187
ASKR01000002
Unclassified
Cloacimonetes bacterium SCGC AAA255-B16 KSB1 bacterium SCGC AAA255-B16 [ASKR]
11846
11919
+
Cys
GCA
[ENA]
¡û
>W131192950
ASNH01000039
Unclassified
Cloacimonetes bacterium SCGC AAA255-C20 KSB1 bacterium SCGC AAA255-C20 [ASNH]
11891
11818
-
Cys
GCA
[ENA]
¡û
>W131192963
ASNI01000001
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
36600
36527
-
Cys
GCA
[ENA]
¡û
>W131193029
ASNK01000026
Unclassified
Cloacimonetes bacterium SCGC AAA252-E20 KSB1 bacterium SCGC AAA252-E20 [ASNK]
5079
5152
+
Cys
GCA
[ENA]
¡û
>W131193056
ASNM01000038
Unclassified
Cloacimonetes bacterium SCGC AAA252-G08 KSB1 bacterium SCGC AAA252-G08 [ASNM]
8526
8599
+
Cys
GCA
[ENA]
¡û
>W131193073
ASNN01000003
Unclassified
Cloacimonetes bacterium SCGC AAA252-I11 KSB1 bacterium SCGC AAA252-I11 [ASNN]
75641
75714
+
Cys
GCA
[ENA]
¡û
>W131193106
ASNO01000001
Unclassified
Cloacimonetes bacterium SCGC AAA252-I16 KSB1 bacterium SCGC AAA252-I16 [ASNO]
44441
44368
-
Cys
GCA
[ENA]
¡û
>W131193148
ASNQ01000036
Unclassified
Cloacimonetes bacterium SCGC AAA252-K16 KSB1 bacterium SCGC AAA252-K16 [ASNQ]
6743
6816
+
Cys
GCA
[ENA]
¡û
>W131193179
ASNT01000002
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
12553
12480
-
Cys
GCA
[ENA]
¡û
>W141139712
AWNX01000189
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
3245
3172
-
Cys
GCA
[ENA]
¡û
>W141139736
AWNY01000078
Unclassified
Cloacimonetes bacterium JGI OTU-2 [AWNY]
256
329
+
Cys
GCA
[ENA]
¡û
>WENV170624829
FUWD013187433
[FUWD] metagenome; unknown
6869
6796
-
Cys
GCA
[ENA]
¢þ
>WENV170624832
FUWD013187434
[FUWD] metagenome; unknown
263
190
-
Cys
GCA
[ENA]
¢þ
>WENV170633097
FUWD013391324
[FUWD] metagenome; unknown
6869
6796
-
Cys
GCA
[ENA]
¢þ
>WENV170633100
FUWD013391325
[FUWD] metagenome; unknown
263
190
-
Cys
GCA
[ENA]
¢þ
>SRA1025790
SRR035085.84244
454 Sequencing (SRP001806)
21
94
+
Cys
GCA
[SRA]
>SRA1025988
SRR035085.121815
454 Sequencing (SRP001806)
443
370
-
Cys
GCA
[SRA]
>SRA1026439
SRR035085.207234
454 Sequencing (SRP001806)
186
259
+
Cys
GCA
[SRA]
>SRA1029356
SRR035087.114980
454 Sequencing (SRP001808)
7
80
+
Cys
GCA
[SRA]
>SRA1033669
SRR035088.318624
454 Sequencing (SRP001809)
314
241
-
Cys
GCA
[SRA]
>SRA1050665
SRR035095.318368
454 Sequencing (SRP001816)
166
239
+
Cys
GCA
[SRA]
Identical group No.786776 (4 seq.)
>WENV170645295
JMSV01000021
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
2774
2701
-
Cys
GCA
[ENA]
¢þ
>SRA1049243
SRR035095.43292
454 Sequencing (SRP001816)
386
313
-
Cys
GCA
[SRA]
>SRA1049261
SRR035095.47443
454 Sequencing (SRP001816)
385
312
-
Cys
GCA
[SRA]
>SRA1050013
SRR035095.177105
454 Sequencing (SRP001816)
386
313
-
Cys
GCA
[SRA]
Identical group No.793144 (10 seq.)
>WENV170600992
FUWD010151795
[FUWD] metagenome; unknown
614
687
+
Cys
GCA
[ENA]
¢þ
>WENV170618897
FUWD012991347
[FUWD] metagenome; unknown
632
559
-
Cys
GCA
[ENA]
¢þ
>WENV170678103
LDZT01011046
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2984
2911
-
Cys
GCA
[ENA]
¢þ
>WENV170678459
LDZU01000578
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2984
2911
-
Cys
GCA
[ENA]
¢þ
>SRA1017487
SRR035082.148362
454 Sequencing (SRP001803)
167
240
+
Cys
GCA
[SRA]
>SRA1032495
SRR035088.26173
454 Sequencing (SRP001809)
349
276
-
Cys
GCA
[SRA]
>SRA1032790
SRR035088.103199
454 Sequencing (SRP001809)
252
325
+
Cys
GCA
[SRA]
>SRA1049057
SRR035095.11388
454 Sequencing (SRP001816)
12
85
+
Cys
GCA
[SRA]
>SRA1049958
SRR035095.168237
454 Sequencing (SRP001816)
380
307
-
Cys
GCA
[SRA]
>W1510076780
CDPL01000047
Atribacterota
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5877
5950
+
Cys
GCA
[ENA]
¡û
Identical group No.794111 (4 seq.)
>WENV170605024
FUWD010441873
[FUWD] metagenome; unknown
80
7
-
Cys
GCA
[ENA]
¢þ
>SRA1020024
SRR035083.43111
454 Sequencing (SRP001804)
80
7
-
Cys
GCA
[SRA]
>SRA1050254
SRR035095.222757
454 Sequencing (SRP001816)
87
14
-
Cys
GCA
[SRA]
>SRA1054714
SRR035099.194050
454 Sequencing (SRP001820)
206
133
-
Cys
GCA
[SRA]
Identical group No.805297 (2 seq.)
>WENV170612828
FUWD012697609
[FUWD] metagenome; unknown
199
270
+
Cys
GCA
[ENA]
¢þ
>SRA1050080
SRR035095.188447
454 Sequencing (SRP001816)
208
279
+
Cys
GCA
[SRA]
Identical group No.805521 (5 seq.)
>WENV170625547
FUWD013200122
[FUWD] metagenome; unknown
4823
4894
+
Cys
GCA
[ENA]
¢þ
>WENV170633774
FUWD013402440
[FUWD] metagenome; unknown
4823
4894
+
Cys
GCA
[ENA]
¢þ
>SRA1042192
SRR035091.351812
454 Sequencing (SRP001812)
126
55
-
Cys
GCA
[SRA]
>SRA1042247
SRR035091.361841
454 Sequencing (SRP001812)
143
214
+
Cys
GCA
[SRA]
>SRA1049516
SRR035095.89078
454 Sequencing (SRP001816)
214
285
+
Cys
GCA
[SRA]
Identical group No.809581 (1 seq.)
>SRA1049460
SRR035095.81042
454 Sequencing (SRP001816)
204
131
-
Cys
GCA
[SRA]
Identical group No.809582 (1 seq.)
>SRA1049561
SRR035095.95747
454 Sequencing (SRP001816)
337
408
+
Cys
GCA
[SRA]
Identical group No.809583 (1 seq.)
>SRA1049623
SRR035095.106122
454 Sequencing (SRP001816)
274
203
-
Cys
GCA
[SRA]
Identical group No.809592 (1 seq.)
>SRA1049918
SRR035095.160098
454 Sequencing (SRP001816)
116
187
+
Cys
GCA
[SRA]
Identical group No.809607 (1 seq.)
>SRA1050638
SRR035095.311042
454 Sequencing (SRP001816)
20
91
+
Cys
GCA
[SRA]
Identical group No.809631 (1 seq.)
>SRA1049969
SRR035095.170106
454 Sequencing (SRP001816)
338
410
+
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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