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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = GCG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453464 (14 seq.)
>WENV170620665
FUWD013036333
[FUWD] metagenome; unknown
2914
2989
+
Arg
GCG
[ENA]
¢þ
>WENV170628813
FUWD013253612
[FUWD] metagenome; unknown
2914
2989
+
Arg
GCG
[ENA]
¢þ
>SRA1034188
SRR035089.18145
454 Sequencing (SRP001810)
185
110
-
Arg
GCG
[SRA]
>SRA1035664
SRR035089.351298
454 Sequencing (SRP001810)
168
243
+
Arg
GCG
[SRA]
>SRA1040452
SRR035091.99697
454 Sequencing (SRP001812)
214
289
+
Arg
GCG
[SRA]
>SRA1040715
SRR035091.135942
454 Sequencing (SRP001812)
105
30
-
Arg
GCG
[SRA]
>SRA1040722
SRR035091.136583
454 Sequencing (SRP001812)
187
262
+
Arg
GCG
[SRA]
>SRA1041989
SRR035091.323677
454 Sequencing (SRP001812)
305
380
+
Arg
GCG
[SRA]
>SRA1042021
SRR035091.328963
454 Sequencing (SRP001812)
361
286
-
Arg
GCG
[SRA]
>SRA1042761
SRR035091.442900
454 Sequencing (SRP001812)
128
203
+
Arg
GCG
[SRA]
>SRA1042877
SRR035091.460300
454 Sequencing (SRP001812)
115
190
+
Arg
GCG
[SRA]
>SRA1049954
SRR035095.166872
454 Sequencing (SRP001816)
254
329
+
Arg
GCG
[SRA]
>SRA1050249
SRR035095.221535
454 Sequencing (SRP001816)
98
173
+
Arg
GCG
[SRA]
>SRA1050386
SRR035095.250313
454 Sequencing (SRP001816)
96
171
+
Arg
GCG
[SRA]
Identical group No.548431 (3 seq.)
>WENV170612839
FUWD012700213
[FUWD] metagenome; unknown
507
432
-
Arg
GCG
[ENA]
¢þ
>SRA1043492
SRR035092.124822
454 Sequencing (SRP001813)
228
303
+
Arg
GCG
[SRA]
>SRA1050338
SRR035095.240080
454 Sequencing (SRP001816)
514
439
-
Arg
GCG
[SRA]
Identical group No.563144 (1 seq.)
>SRA1050465
SRR035095.268702
454 Sequencing (SRP001816)
209
134
-
Arg
GCG
[SRA]
Identical group No.711110 (3 seq.)
>WENV170612674
FUWD012656162
[FUWD] metagenome; unknown
357
285
-
Arg
GCG
[ENA]
¢þ
>SRA1044833
SRR035092.353517
454 Sequencing (SRP001813)
357
285
-
Arg
GCG
[SRA]
>SRA1049138
SRR035095.26992
454 Sequencing (SRP001816)
453
381
-
Arg
GCG
[SRA]
Identical group No.711460 (3 seq.)
>WENV170623499
FUWD013153934
[FUWD] metagenome; unknown
678
605
-
Arg
GCG
[ENA]
¢þ
>WENV170631763
FUWD013364699
[FUWD] metagenome; unknown
843
916
+
Arg
GCG
[ENA]
¢þ
>SRA1050127
SRR035095.195821
454 Sequencing (SRP001816)
352
279
-
Arg
GCG
[SRA]
Identical group No.720446 (2 seq.)
>SRA1050207
SRR035095.212454
454 Sequencing (SRP001816)
83
9
-
Arg
GCG
[SRA]
>SRA1050578
SRR035095.295981
454 Sequencing (SRP001816)
83
9
-
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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