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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = GCT
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6820 (3 seq.)
>WENV170605213
FUWD010459051
[FUWD] metagenome; unknown
263
357
+
Ser
GCT
[ENA]
¢þ
>SRA1045113
SRR035092.412856
454 Sequencing (SRP001813)
203
297
+
Ser
GCT
[SRA]
>SRA1049852
SRR035095.148012
454 Sequencing (SRP001816)
274
368
+
Ser
GCT
[SRA]
Identical group No.7007 (1 seq.)
>SRA1050061
SRR035095.185315
454 Sequencing (SRP001816)
326
232
-
Ser
GCT
[SRA]
Identical group No.8258 (2 seq.)
>SRA1034723
SRR035089.160222
454 Sequencing (SRP001810)
325
232
-
Ser
GCT
[SRA]
>SRA1050165
SRR035095.204131
454 Sequencing (SRP001816)
478
385
-
Ser
GCT
[SRA]
Identical group No.8263 (8 seq.)
>WENV170619690
FUWD013019112
[FUWD] metagenome; unknown
268
361
+
Ser
GCT
[ENA]
¢þ
>SRA1032314
SRR035087.601878
454 Sequencing (SRP001808)
31
124
+
Ser
GCT
[SRA]
>SRA1036052
SRR035089.434963
454 Sequencing (SRP001810)
280
187
-
Ser
GCT
[SRA]
>SRA1036081
SRR035089.440373
454 Sequencing (SRP001810)
5
98
+
Ser
GCT
[SRA]
>SRA1036266
SRR035089.483055
454 Sequencing (SRP001810)
245
152
-
Ser
GCT
[SRA]
>SRA1036756
SRR035089.607301
454 Sequencing (SRP001810)
125
218
+
Ser
GCT
[SRA]
>SRA1048041
SRR035094.96920
454 Sequencing (SRP001815)
43
136
+
Ser
GCT
[SRA]
>SRA1050346
SRR035095.241610
454 Sequencing (SRP001816)
331
424
+
Ser
GCT
[SRA]
Identical group No.9085 (6 seq.)
>WENV183512219
OMKS01000147
[OMKS] sediment metagenome; hot spring sediment
42045
42138
+
Ser
GCT
[ENA]
¢þ
>WENV170624188
FUWD013177245
[FUWD] metagenome; unknown
2578
2485
-
Ser
GCT
[ENA]
¢þ
>WENV170632471
FUWD013383051
[FUWD] metagenome; unknown
2578
2485
-
Ser
GCT
[ENA]
¢þ
>SRA1047812
SRR035094.46139
454 Sequencing (SRP001815)
207
114
-
Ser
GCT
[SRA]
>SRA1049815
SRR035095.141930
454 Sequencing (SRP001816)
151
244
+
Ser
GCT
[SRA]
>SRA1049938
SRR035095.163281
454 Sequencing (SRP001816)
392
299
-
Ser
GCT
[SRA]
Identical group No.10277 (1 seq.)
>SRA1049175
SRR035095.32777
454 Sequencing (SRP001816)
280
372
+
Ser
GCT
[SRA]
Identical group No.10279 (1 seq.)
>SRA1050344
SRR035095.241277
454 Sequencing (SRP001816)
147
240
+
Ser
GCT
[SRA]
Identical group No.13440 (5 seq.)
>WENV170598543
FUWD010039374
[FUWD] metagenome; unknown
621
529
-
Ser
GCT
[ENA]
¢þ
>WENV170616647
FUWD012895619
[FUWD] metagenome; unknown
330
422
+
Ser
GCT
[ENA]
¢þ
>SRA1031785
SRR035087.486254
454 Sequencing (SRP001808)
330
422
+
Ser
GCT
[SRA]
>SRA1033300
SRR035088.219543
454 Sequencing (SRP001809)
489
397
-
Ser
GCT
[SRA]
>SRA1049834
SRR035095.145163
454 Sequencing (SRP001816)
238
330
+
Ser
GCT
[SRA]
Identical group No.15775 (5 seq.)
>WENV170620998
FUWD013045546
[FUWD] metagenome; unknown
1210
1302
+
Ser
GCT
[ENA]
¢þ
>WENV170629155
FUWD013262451
[FUWD] metagenome; unknown
1210
1302
+
Ser
GCT
[ENA]
¢þ
>SRA1040516
SRR035091.108829
454 Sequencing (SRP001812)
331
423
+
Ser
GCT
[SRA]
>SRA1042243
SRR035091.361000
454 Sequencing (SRP001812)
469
377
-
Ser
GCT
[SRA]
>SRA1050385
SRR035095.249803
454 Sequencing (SRP001816)
105
197
+
Ser
GCT
[SRA]
Identical group No.15779 (3 seq.)
>WENV170625394
FUWD013197155
[FUWD] metagenome; unknown
92
1
-
Ser
GCT
[ENA]
¢þ
>WENV170633634
FUWD013399747
[FUWD] metagenome; unknown
92
1
-
Ser
GCT
[ENA]
¢þ
>SRA1050182
SRR035095.207701
454 Sequencing (SRP001816)
145
237
+
Ser
GCT
[SRA]
Identical group No.16323 (1 seq.)
>SRA1049743
SRR035095.131096
454 Sequencing (SRP001816)
142
50
-
Ser
GCT
[SRA]
Identical group No.16326 (1 seq.)
>SRA1050556
SRR035095.291249
454 Sequencing (SRP001816)
168
76
-
Ser
GCT
[SRA]
Identical group No.16327 (1 seq.)
>SRA1049652
SRR035095.111428
454 Sequencing (SRP001816)
45
138
+
Ser
GCT
[SRA]
Identical group No.22554 (5 seq.)
>WENV170605239
FUWD010461093
[FUWD] metagenome; unknown
116
206
+
Ser
GCT
[ENA]
¢þ
>SRA1050535
SRR035095.285621
454 Sequencing (SRP001816)
274
184
-
Ser
GCT
[SRA]
>SRA1050571
SRR035095.295299
454 Sequencing (SRP001816)
274
184
-
Ser
GCT
[SRA]
>SRA1054468
SRR035099.138759
454 Sequencing (SRP001820)
326
236
-
Ser
GCT
[SRA]
>SRA1054830
SRR035099.226115
454 Sequencing (SRP001820)
48
138
+
Ser
GCT
[SRA]
Identical group No.24691 (3 seq.)
>WENV170612811
FUWD012694093
[FUWD] metagenome; unknown
94
5
-
Ser
GCT
[ENA]
¢þ
>SRA1049735
SRR035095.129436
454 Sequencing (SRP001816)
104
15
-
Ser
GCT
[SRA]
>SRA1049844
SRR035095.147001
454 Sequencing (SRP001816)
104
15
-
Ser
GCT
[SRA]
Identical group No.25450 (2 seq.)
>SRA1049732
SRR035095.129245
454 Sequencing (SRP001816)
252
343
+
Ser
GCT
[SRA]
>SRA1049953
SRR035095.165868
454 Sequencing (SRP001816)
252
343
+
Ser
GCT
[SRA]
Identical group No.25451 (1 seq.)
>SRA1050089
SRR035095.190430
454 Sequencing (SRP001816)
212
121
-
Ser
GCT
[SRA]
Identical group No.52751 (4 seq.)
>WENV170618627
FUWD012979166
[FUWD] metagenome; unknown
91
2
-
Ser
GCT
[ENA]
¢þ
>SRA1042562
SRR035091.409178
454 Sequencing (SRP001812)
7
96
+
Ser
GCT
[SRA]
>SRA1049137
SRR035095.26821
454 Sequencing (SRP001816)
366
277
-
Ser
GCT
[SRA]
>SRA1054656
SRR035099.182536
454 Sequencing (SRP001820)
249
338
+
Ser
GCT
[SRA]
Identical group No.60071 (1 seq.)
>SRA1049147
SRR035095.28687
454 Sequencing (SRP001816)
132
46
-
Ser
GCT
[SRA]
Identical group No.74727 (8 seq.)
>WENV170613255
FUWD012792327
[FUWD] metagenome; unknown
174
262
+
Ser
GCT
[ENA]
¢þ
>WENV170626113
FUWD013213879
[FUWD] metagenome; unknown
917
1005
+
Ser
GCT
[ENA]
¢þ
>WENV170629531
FUWD013272950
[FUWD] metagenome; unknown
5963
5875
-
Ser
GCT
[ENA]
¢þ
>SRA1018208
SRR035082.256230
454 Sequencing (SRP001803)
128
216
+
Ser
GCT
[SRA]
>SRA1029449
SRR035087.128778
454 Sequencing (SRP001808)
118
30
-
Ser
GCT
[SRA]
>SRA1030603
SRR035087.303493
454 Sequencing (SRP001808)
135
47
-
Ser
GCT
[SRA]
>SRA1040261
SRR035091.68114
454 Sequencing (SRP001812)
214
126
-
Ser
GCT
[SRA]
>SRA1050579
SRR035095.296230
454 Sequencing (SRP001816)
269
181
-
Ser
GCT
[SRA]
Identical group No.80342 (1 seq.)
>SRA1049461
SRR035095.81301
454 Sequencing (SRP001816)
357
445
+
Ser
GCT
[SRA]
Identical group No.80346 (1 seq.)
>SRA1050003
SRR035095.175079
454 Sequencing (SRP001816)
113
201
+
Ser
GCT
[SRA]
Identical group No.80348 (1 seq.)
>SRA1050167
SRR035095.204330
454 Sequencing (SRP001816)
141
229
+
Ser
GCT
[SRA]
Identical group No.87038 (6 seq.)
>WENV170605178
FUWD010456443
[FUWD] metagenome; unknown
163
78
-
Ser
GCT
[ENA]
¢þ
>SRA1026353
SRR035085.191822
454 Sequencing (SRP001806)
311
226
-
Ser
GCT
[SRA]
>SRA1040119
SRR035091.41973
454 Sequencing (SRP001812)
223
138
-
Ser
GCT
[SRA]
>SRA1040202
SRR035091.57489
454 Sequencing (SRP001812)
148
61
-
Ser
GCT
[SRA]
>SRA1042874
SRR035091.459667
454 Sequencing (SRP001812)
266
351
+
Ser
GCT
[SRA]
>SRA1049363
SRR035095.64099
454 Sequencing (SRP001816)
375
460
+
Ser
GCT
[SRA]
Identical group No.90586 (3 seq.)
>WENV170607830
FUWD010859474
[FUWD] metagenome; unknown
275
362
+
Ser
GCT
[ENA]
¢þ
>SRA1031298
SRR035087.407777
454 Sequencing (SRP001808)
139
226
+
Ser
GCT
[SRA]
>SRA1050317
SRR035095.236452
454 Sequencing (SRP001816)
96
9
-
Ser
GCT
[SRA]
Identical group No.98422 (6 seq.)
>WENV170599860
FUWD010095332
[FUWD] metagenome; unknown
508
595
+
Ser
GCT
[ENA]
¢þ
>SRA1018104
SRR035082.240814
454 Sequencing (SRP001803)
161
248
+
Ser
GCT
[SRA]
>SRA1040200
SRR035091.57269
454 Sequencing (SRP001812)
5
91
+
Ser
GCT
[SRA]
>SRA1040554
SRR035091.114456
454 Sequencing (SRP001812)
181
268
+
Ser
GCT
[SRA]
>SRA1042062
SRR035091.333245
454 Sequencing (SRP001812)
304
391
+
Ser
GCT
[SRA]
>SRA1050244
SRR035095.220376
454 Sequencing (SRP001816)
78
165
+
Ser
GCT
[SRA]
Identical group No.98466 (3 seq.)
>WENV170605216
FUWD010459130
[FUWD] metagenome; unknown
35
122
+
Ser
GCT
[ENA]
¢þ
>SRA1016688
SRR035082.3291
454 Sequencing (SRP001803)
36
123
+
Ser
GCT
[SRA]
>SRA1050321
SRR035095.236943
454 Sequencing (SRP001816)
332
417
+
Ser
GCT
[SRA]
Identical group No.98493 (3 seq.)
>WENV170608129
FUWD010895623
[FUWD] metagenome; unknown
82
168
+
Ser
GCT
[ENA]
¢þ
>SRA1041616
SRR035091.270198
454 Sequencing (SRP001812)
82
168
+
Ser
GCT
[SRA]
>SRA1050502
SRR035095.277821
454 Sequencing (SRP001816)
281
195
-
Ser
GCT
[SRA]
Identical group No.98555 (3 seq.)
>WENV170612784
FUWD012687687
[FUWD] metagenome; unknown
285
198
-
Ser
GCT
[ENA]
¢þ
>SRA1049203
SRR035095.37679
454 Sequencing (SRP001816)
293
206
-
Ser
GCT
[SRA]
>SRA1050499
SRR035095.276734
454 Sequencing (SRP001816)
296
209
-
Ser
GCT
[SRA]
Identical group No.153886 (10 seq.)
>WENV170624309
FUWD013179602
[FUWD] metagenome; unknown
2449
2534
+
Ser
GCT
[ENA]
¢þ
>WENV170632596
FUWD013384921
[FUWD] metagenome; unknown
2449
2534
+
Ser
GCT
[ENA]
¢þ
>SRA1018589
SRR035082.316718
454 Sequencing (SRP001803)
253
168
-
Ser
GCT
[SRA]
>SRA1034944
SRR035089.204387
454 Sequencing (SRP001810)
124
209
+
Ser
GCT
[SRA]
>SRA1040959
SRR035091.175064
454 Sequencing (SRP001812)
141
226
+
Ser
GCT
[SRA]
>SRA1042295
SRR035091.369113
454 Sequencing (SRP001812)
223
138
-
Ser
GCT
[SRA]
>SRA1043349
SRR035092.99390
454 Sequencing (SRP001813)
454
369
-
Ser
GCT
[SRA]
>SRA1048496
SRR035094.187192
454 Sequencing (SRP001815)
381
296
-
Ser
GCT
[SRA]
>SRA1048527
SRR035094.193742
454 Sequencing (SRP001815)
205
120
-
Ser
GCT
[SRA]
>SRA1050468
SRR035095.269502
454 Sequencing (SRP001816)
186
101
-
Ser
GCT
[SRA]
Identical group No.167748 (3 seq.)
>SRA1043426
SRR035092.112804
454 Sequencing (SRP001813)
122
37
-
Ser
GCT
[SRA]
>SRA1050140
SRR035095.199831
454 Sequencing (SRP001816)
211
296
+
Ser
GCT
[SRA]
>SRA1050195
SRR035095.210069
454 Sequencing (SRP001816)
211
296
+
Ser
GCT
[SRA]
Identical group No.167773 (2 seq.)
>SRA1021761
SRR035083.304815
454 Sequencing (SRP001804)
21
105
+
Ser
GCT
[SRA]
>SRA1049210
SRR035095.38734
454 Sequencing (SRP001816)
359
275
-
Ser
GCT
[SRA]
Identical group No.222866 (7 seq.)
>WENV170215495
CEPX01159329
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
283
363
+
Ser
GCT
[ENA]
¢þ
>WENV170612512
FUWD012626629
[FUWD] metagenome; unknown
234
314
+
Ser
GCT
[ENA]
¢þ
>WENV170613487
FUWD012808292
[FUWD] metagenome; unknown
321
401
+
Ser
GCT
[ENA]
¢þ
>SRA1020664
SRR035083.148698
454 Sequencing (SRP001804)
199
119
-
Ser
GCT
[SRA]
>SRA1041211
SRR035091.214083
454 Sequencing (SRP001812)
94
174
+
Ser
GCT
[SRA]
>SRA1041964
SRR035091.320314
454 Sequencing (SRP001812)
234
314
+
Ser
GCT
[SRA]
>SRA1050645
SRR035095.312420
454 Sequencing (SRP001816)
189
109
-
Ser
GCT
[SRA]
Identical group No.222901 (8 seq.)
>WENV170624526
FUWD013182687
[FUWD] metagenome; unknown
20955
21035
+
Ser
GCT
[ENA]
¢þ
>WENV170632812
FUWD013387402
[FUWD] metagenome; unknown
20955
21035
+
Ser
GCT
[ENA]
¢þ
>SRA1039978
SRR035091.8590
454 Sequencing (SRP001812)
228
148
-
Ser
GCT
[SRA]
>SRA1040532
SRR035091.110385
454 Sequencing (SRP001812)
13
93
+
Ser
GCT
[SRA]
>SRA1040950
SRR035091.172892
454 Sequencing (SRP001812)
375
295
-
Ser
GCT
[SRA]
>SRA1042878
SRR035091.460413
454 Sequencing (SRP001812)
136
216
+
Ser
GCT
[SRA]
>SRA1049166
SRR035095.31607
454 Sequencing (SRP001816)
163
243
+
Ser
GCT
[SRA]
>SRA1049594
SRR035095.100589
454 Sequencing (SRP001816)
310
230
-
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK