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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = TAA
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.79258 (2 seq.)
>WENV170612840
FUWD012700836
[FUWD] metagenome; unknown
89
3
-
Leu
TAA
[ENA]
¢þ
>SRA1050400
SRR035095.254733
454 Sequencing (SRP001816)
157
71
-
Leu
TAA
[SRA]
Identical group No.80339 (3 seq.)
>SRA1049244
SRR035095.43292
454 Sequencing (SRP001816)
266
178
-
Leu
TAA
[SRA]
>SRA1049262
SRR035095.47443
454 Sequencing (SRP001816)
264
176
-
Leu
TAA
[SRA]
>SRA1050014
SRR035095.177105
454 Sequencing (SRP001816)
266
178
-
Leu
TAA
[SRA]
Identical group No.80347 (1 seq.)
>SRA1050042
SRR035095.180550
454 Sequencing (SRP001816)
120
207
+
Leu
TAA
[SRA]
Identical group No.80351 (1 seq.)
>SRA1050183
SRR035095.208022
454 Sequencing (SRP001816)
251
339
+
Leu
TAA
[SRA]
Identical group No.87032 (7 seq.)
>WENV183800735
PVBE010612964
[PVBE] marine metagenome; water
186
273
+
Leu
TAA
[ENA]
¢þ
>WENV170605020
FUWD010441545
[FUWD] metagenome; unknown
29
116
+
Leu
TAA
[ENA]
¢þ
>WENV170698840
LGVF01427963
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1656
1743
+
Leu
TAA
[ENA]
¢þ
>SRA1026103
SRR035085.143678
454 Sequencing (SRP001806)
67
154
+
Leu
TAA
[SRA]
>SRA1036559
SRR035089.548123
454 Sequencing (SRP001810)
88
1
-
Leu
TAA
[SRA]
>SRA1049087
SRR035095.17870
454 Sequencing (SRP001816)
168
255
+
Leu
TAA
[SRA]
>SRA1049223
SRR035095.40504
454 Sequencing (SRP001816)
167
254
+
Leu
TAA
[SRA]
Identical group No.87065 (61 seq.)
>W1711393281
MEOL01000029
Bacteroidota
Bacteroidetes bacterium GWF2_41_31 [MEOL]
93050
93135
+
Leu
TAA
[ENA]
¡û
>WENV180110173
OAPM01000785
[OAPM] marine metagenome; ENVO.00002110
367
452
+
Leu
TAA
[ENA]
¢þ
>WENV180214709
OBAP01046972
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
324
409
+
Leu
TAA
[ENA]
¢þ
>WENV180357857
OBNO01007818
[OBNO] marine metagenome; ENVO 00002150
147
232
+
Leu
TAA
[ENA]
¢þ
>WENV180358625
OBNQ01000663
[OBNQ] marine metagenome; ENVO 00002150
2756
2671
-
Leu
TAA
[ENA]
¢þ
>WENV180359624
OBNS01007032
[OBNS] marine metagenome; Seawater
226
311
+
Leu
TAA
[ENA]
¢þ
>WENV180380599
OBOR01000742
[OBOR] marine metagenome; ENVO 00002227
1807
1722
-
Leu
TAA
[ENA]
¢þ
>WENV180385904
OBPB01004273
[OBPB] marine metagenome; Sterile flask
86
1
-
Leu
TAA
[ENA]
¢þ
>WENV180386672
OBPC01052673
[OBPC] marine metagenome; Sterile flask
208
123
-
Leu
TAA
[ENA]
¢þ
>WENV180592380
OCOW01002956
[OCOW] marine metagenome; Sterivex cartridges
901
986
+
Leu
TAA
[ENA]
¢þ
>WENV180594392
OCOZ01020050
[OCOZ] marine metagenome; vv
291
206
-
Leu
TAA
[ENA]
¢þ
>WENV180595428
OCPD01025649
[OCPD] marine metagenome; Mesotrophic water
177
92
-
Leu
TAA
[ENA]
¢þ
>WENV180637957
OCRG01203575
[OCRG] marine metagenome; seawater
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV180638200
OCRH01033456
[OCRH] marine metagenome; ENVO_00002010
234
149
-
Leu
TAA
[ENA]
¢þ
>WENV181391637
OFRT01031710
[OFRT] seawater metagenome; seawater
379
464
+
Leu
TAA
[ENA]
¢þ
>WENV182548304
OJBV01014093
[OJBV] seawater metagenome; Sea water
900
813
-
Leu
TAA
[ENA]
¢þ
>WENV182550698
OJCA01030205
[OJCA] seawater metagenome; Sea water
15
100
+
Leu
TAA
[ENA]
¢þ
>WENV182552004
OJCJ01002874
[OJCJ] seawater metagenome; Sea water
3390
3475
+
Leu
TAA
[ENA]
¢þ
>WENV019254
AACY020528732
Marine microbial communities from Global Ocean Sampling (GOS)
1030
943
-
Leu
TAA
[ENA]
>WENV182589968
OJIG01019275
[OJIG] seawater metagenome; Sea water
616
529
-
Leu
TAA
[ENA]
¢þ
>WENV020260
AACY020551579
Marine microbial communities from Global Ocean Sampling (GOS)
3306
3395
+
Leu
TAA
[ENA]
>WENV183619132
OOFP01031503
[OOFP] marine metagenome; seawater
379
464
+
Leu
TAA
[ENA]
¢þ
>WENV183698298
OZSS01000336
[OZSS] metagenome; Seawater sample
22165
22080
-
Leu
TAA
[ENA]
¢þ
>WENV170461824
CEVD01023748
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7386
7299
-
Leu
TAA
[ENA]
¢þ
>WENV170568722
FLMP01070465
[FLMP] seawater metagenome; seawater
804
891
+
Leu
TAA
[ENA]
¢þ
>WENV170616722
FUWD012900628
[FUWD] metagenome; unknown
420
335
-
Leu
TAA
[ENA]
¢þ
>WENV170622288
FUWD013096130
[FUWD] metagenome; unknown
1552
1639
+
Leu
TAA
[ENA]
¢þ
>WENV170626861
FUWD013229832
[FUWD] metagenome; unknown
1874
1961
+
Leu
TAA
[ENA]
¢þ
>WENV170631114
FUWD013338550
[FUWD] metagenome; unknown
19470
19557
+
Leu
TAA
[ENA]
¢þ
>WENV170631816
FUWD013366435
[FUWD] metagenome; unknown
30263
30176
-
Leu
TAA
[ENA]
¢þ
>WENV170738182
LULO01025841
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
651
738
+
Leu
TAA
[ENA]
¢þ
>WENV170806958
MDSW01090281
[MDSW] marine metagenome; seawater
4652
4737
+
Leu
TAA
[ENA]
¢þ
>WENV170807595
MDSW01100955
[MDSW] marine metagenome; seawater
7568
7481
-
Leu
TAA
[ENA]
¢þ
>WENV170819292
MDSX01089957
[MDSX] marine metagenome; seawater
5314
5227
-
Leu
TAA
[ENA]
¢þ
>WENV170822759
MDSY01045924
[MDSY] marine metagenome; seawater
6188
6101
-
Leu
TAA
[ENA]
¢þ
>WENV170823023
MDSY01050137
[MDSY] marine metagenome; seawater
4624
4537
-
Leu
TAA
[ENA]
¢þ
>WENV170824708
MDSY01080694
[MDSY] marine metagenome; seawater
196
111
-
Leu
TAA
[ENA]
¢þ
>WENV170860934
MDTB01057461
[MDTB] marine metagenome; seawater
22373
22288
-
Leu
TAA
[ENA]
¢þ
>WENV170870656
MDTB01195053
[MDTB] marine metagenome; seawater
102
17
-
Leu
TAA
[ENA]
¢þ
>WENV170871987
MDTB01212955
[MDTB] marine metagenome; seawater
2297
2212
-
Leu
TAA
[ENA]
¢þ
>WENV170877768
MDTC01064197
[MDTC] marine metagenome; seawater
431
518
+
Leu
TAA
[ENA]
¢þ
>WENV170889351
MDTC01273568
[MDTC] marine metagenome; seawater
28
113
+
Leu
TAA
[ENA]
¢þ
>WENV170921327
MDTG01012145
[MDTG] marine metagenome; seawater
5532
5445
-
Leu
TAA
[ENA]
¢þ
>WENV170951460
MEHZ011554679
[MEHZ] marine metagenome; marine surface water
774
687
-
Leu
TAA
[ENA]
¢þ
>WENV170951664
MEHZ011563145
[MEHZ] marine metagenome; marine surface water
88
1
-
Leu
TAA
[ENA]
¢þ
>SRA1032518
SRR035088.36264
454 Sequencing (SRP001809)
339
254
-
Leu
TAA
[SRA]
>SRA1032777
SRR035088.101392
454 Sequencing (SRP001809)
90
175
+
Leu
TAA
[SRA]
>SRA1032939
SRR035088.134668
454 Sequencing (SRP001809)
222
137
-
Leu
TAA
[SRA]
>SRA1033630
SRR035088.308288
454 Sequencing (SRP001809)
102
17
-
Leu
TAA
[SRA]
>SRA1034994
SRR035089.212662
454 Sequencing (SRP001810)
166
81
-
Leu
TAA
[SRA]
>SRA1035169
SRR035089.251762
454 Sequencing (SRP001810)
225
310
+
Leu
TAA
[SRA]
>SRA1037979
SRR035090.228782
454 Sequencing (SRP001811)
230
145
-
Leu
TAA
[SRA]
>SRA1038623
SRR035090.338761
454 Sequencing (SRP001811)
100
15
-
Leu
TAA
[SRA]
>SRA1038666
SRR035090.346396
454 Sequencing (SRP001811)
386
471
+
Leu
TAA
[SRA]
>SRA1038748
SRR035090.359328
454 Sequencing (SRP001811)
228
143
-
Leu
TAA
[SRA]
>SRA1047652
SRR035094.9766
454 Sequencing (SRP001815)
50
135
+
Leu
TAA
[SRA]
>SRA1047762
SRR035094.36314
454 Sequencing (SRP001815)
50
135
+
Leu
TAA
[SRA]
>SRA1050461
SRR035095.268327
454 Sequencing (SRP001816)
78
163
+
Leu
TAA
[SRA]
>SRA1050532
SRR035095.284690
454 Sequencing (SRP001816)
283
196
-
Leu
TAA
[SRA]
>SRA1054237
SRR035099.90381
454 Sequencing (SRP001820)
302
217
-
Leu
TAA
[SRA]
>WENV036563
AACY021790060
Marine microbial communities from Global Ocean Sampling (GOS)
441
352
-
Leu
TAA
[ENA]
Identical group No.90592 (3 seq.)
>SRA1031755
SRR035087.482418
454 Sequencing (SRP001808)
296
209
-
Leu
TAA
[SRA]
>SRA1049755
SRR035095.134795
454 Sequencing (SRP001816)
107
20
-
Leu
TAA
[SRA]
>SRA1050599
SRR035095.298498
454 Sequencing (SRP001816)
107
20
-
Leu
TAA
[SRA]
Identical group No.98616 (5 seq.)
>WENV170622769
FUWD013120800
[FUWD] metagenome; unknown
926
839
-
Leu
TAA
[ENA]
¢þ
>WENV170630982
FUWD013334571
[FUWD] metagenome; unknown
926
839
-
Leu
TAA
[ENA]
¢þ
>SRA1041976
SRR035091.321861
454 Sequencing (SRP001812)
195
108
-
Leu
TAA
[SRA]
>SRA1048704
SRR035094.230992
454 Sequencing (SRP001815)
339
252
-
Leu
TAA
[SRA]
>SRA1050324
SRR035095.237477
454 Sequencing (SRP001816)
59
146
+
Leu
TAA
[SRA]
Identical group No.100560 (1 seq.)
>SRA1049079
SRR035095.15617
454 Sequencing (SRP001816)
197
283
+
Leu
TAA
[SRA]
Identical group No.100562 (1 seq.)
>SRA1049270
SRR035095.48274
454 Sequencing (SRP001816)
126
41
-
Leu
TAA
[SRA]
Identical group No.100563 (1 seq.)
>SRA1049272
SRR035095.48681
454 Sequencing (SRP001816)
152
65
-
Leu
TAA
[SRA]
Identical group No.100568 (1 seq.)
>SRA1049550
SRR035095.94632
454 Sequencing (SRP001816)
477
390
-
Leu
TAA
[SRA]
Identical group No.100569 (1 seq.)
>SRA1049557
SRR035095.95466
454 Sequencing (SRP001816)
219
303
+
Leu
TAA
[SRA]
Identical group No.100571 (1 seq.)
>SRA1049726
SRR035095.127904
454 Sequencing (SRP001816)
177
93
-
Leu
TAA
[SRA]
Identical group No.100577 (1 seq.)
>SRA1050514
SRR035095.280156
454 Sequencing (SRP001816)
177
90
-
Leu
TAA
[SRA]
Identical group No.100578 (1 seq.)
>SRA1050543
SRR035095.287665
454 Sequencing (SRP001816)
217
301
+
Leu
TAA
[SRA]
Identical group No.100579 (1 seq.)
>SRA1050544
SRR035095.287743
454 Sequencing (SRP001816)
158
245
+
Leu
TAA
[SRA]
Identical group No.112573 (9 seq.)
>WENV170624527
FUWD013182687
[FUWD] metagenome; unknown
31627
31544
-
Leu
TAA
[ENA]
¢þ
>WENV170632813
FUWD013387402
[FUWD] metagenome; unknown
31627
31544
-
Leu
TAA
[ENA]
¢þ
>SRA1034654
SRR035089.145997
454 Sequencing (SRP001810)
95
12
-
Leu
TAA
[SRA]
>SRA1034739
SRR035089.163740
454 Sequencing (SRP001810)
254
171
-
Leu
TAA
[SRA]
>SRA1035019
SRR035089.220217
454 Sequencing (SRP001810)
254
171
-
Leu
TAA
[SRA]
>SRA1044125
SRR035092.227865
454 Sequencing (SRP001813)
190
107
-
Leu
TAA
[SRA]
>SRA1047946
SRR035094.72878
454 Sequencing (SRP001815)
193
276
+
Leu
TAA
[SRA]
>SRA1050269
SRR035095.226114
454 Sequencing (SRP001816)
176
93
-
Leu
TAA
[SRA]
>SRA1050617
SRR035095.308058
454 Sequencing (SRP001816)
86
169
+
Leu
TAA
[SRA]
Identical group No.112623 (4 seq.)
>WENV170622829
FUWD013122686
[FUWD] metagenome; unknown
839
753
-
Leu
TAA
[ENA]
¢þ
>WENV170631047
FUWD013336253
[FUWD] metagenome; unknown
839
753
-
Leu
TAA
[ENA]
¢þ
>SRA1036012
SRR035089.426190
454 Sequencing (SRP001810)
106
20
-
Leu
TAA
[SRA]
>SRA1049127
SRR035095.25444
454 Sequencing (SRP001816)
167
253
+
Leu
TAA
[SRA]
Identical group No.131602 (2 seq.)
>WENV170607784
FUWD010855863
[FUWD] metagenome; unknown
313
230
-
Leu
TAA
[ENA]
¢þ
>SRA1050483
SRR035095.272061
454 Sequencing (SRP001816)
190
273
+
Leu
TAA
[SRA]
Identical group No.131743 (20 seq.)
>WENV170613786
FUWD012820292
[FUWD] metagenome; unknown
824
910
+
Leu
TAA
[ENA]
¢þ
>SRA1020313
SRR035083.95522
454 Sequencing (SRP001804)
142
56
-
Leu
TAA
[SRA]
>SRA1020345
SRR035083.99985
454 Sequencing (SRP001804)
81
167
+
Leu
TAA
[SRA]
>SRA1021000
SRR035083.195373
454 Sequencing (SRP001804)
141
227
+
Leu
TAA
[SRA]
>SRA1021151
SRR035083.215184
454 Sequencing (SRP001804)
95
9
-
Leu
TAA
[SRA]
>SRA1021252
SRR035083.229372
454 Sequencing (SRP001804)
320
234
-
Leu
TAA
[SRA]
>SRA1021545
SRR035083.271147
454 Sequencing (SRP001804)
128
214
+
Leu
TAA
[SRA]
>SRA1022223
SRR035083.370108
454 Sequencing (SRP001804)
149
235
+
Leu
TAA
[SRA]
>SRA1022428
SRR035083.404133
454 Sequencing (SRP001804)
106
192
+
Leu
TAA
[SRA]
>SRA1033278
SRR035088.212503
454 Sequencing (SRP001809)
164
78
-
Leu
TAA
[SRA]
>SRA1037192
SRR035090.91054
454 Sequencing (SRP001811)
255
169
-
Leu
TAA
[SRA]
>SRA1037730
SRR035090.181539
454 Sequencing (SRP001811)
147
61
-
Leu
TAA
[SRA]
>SRA1037861
SRR035090.206885
454 Sequencing (SRP001811)
1
87
+
Leu
TAA
[SRA]
>SRA1037967
SRR035090.227535
454 Sequencing (SRP001811)
150
236
+
Leu
TAA
[SRA]
>SRA1038447
SRR035090.306814
454 Sequencing (SRP001811)
152
238
+
Leu
TAA
[SRA]
>SRA1038848
SRR035090.379455
454 Sequencing (SRP001811)
151
237
+
Leu
TAA
[SRA]
>SRA1038942
SRR035090.397972
454 Sequencing (SRP001811)
152
238
+
Leu
TAA
[SRA]
>SRA1039545
SRR035090.512823
454 Sequencing (SRP001811)
334
248
-
Leu
TAA
[SRA]
>SRA1039863
SRR035090.585814
454 Sequencing (SRP001811)
152
238
+
Leu
TAA
[SRA]
>SRA1049992
SRR035095.173355
454 Sequencing (SRP001816)
324
238
-
Leu
TAA
[SRA]
Identical group No.131810 (5 seq.)
>WENV170623034
FUWD013133875
[FUWD] metagenome; unknown
999
1084
+
Leu
TAA
[ENA]
¢þ
>WENV170631268
FUWD013346922
[FUWD] metagenome; unknown
999
1084
+
Leu
TAA
[ENA]
¢þ
>SRA1032933
SRR035088.133196
454 Sequencing (SRP001809)
142
57
-
Leu
TAA
[SRA]
>SRA1040849
SRR035091.159286
454 Sequencing (SRP001812)
14
99
+
Leu
TAA
[SRA]
>SRA1049144
SRR035095.28009
454 Sequencing (SRP001816)
142
57
-
Leu
TAA
[SRA]
Identical group No.131835 (3 seq.)
>WENV170625548
FUWD013200122
[FUWD] metagenome; unknown
4901
4987
+
Leu
TAA
[ENA]
¢þ
>WENV170633775
FUWD013402440
[FUWD] metagenome; unknown
4901
4987
+
Leu
TAA
[ENA]
¢þ
>SRA1049517
SRR035095.89078
454 Sequencing (SRP001816)
292
378
+
Leu
TAA
[SRA]
Identical group No.134863 (1 seq.)
>SRA1049466
SRR035095.82046
454 Sequencing (SRP001816)
220
303
+
Leu
TAA
[SRA]
Identical group No.134864 (1 seq.)
>SRA1049479
SRR035095.83140
454 Sequencing (SRP001816)
13
99
+
Leu
TAA
[SRA]
Identical group No.134866 (1 seq.)
>SRA1049704
SRR035095.121774
454 Sequencing (SRP001816)
5
91
+
Leu
TAA
[SRA]
Identical group No.134871 (1 seq.)
>SRA1049900
SRR035095.156435
454 Sequencing (SRP001816)
363
280
-
Leu
TAA
[SRA]
Identical group No.153887 (5 seq.)
>WENV170608051
FUWD010886918
[FUWD] metagenome; unknown
285
202
-
Leu
TAA
[ENA]
¢þ
>SRA1034968
SRR035089.208746
454 Sequencing (SRP001810)
290
207
-
Leu
TAA
[SRA]
>SRA1035380
SRR035089.293750
454 Sequencing (SRP001810)
290
207
-
Leu
TAA
[SRA]
>SRA1042028
SRR035091.329138
454 Sequencing (SRP001812)
331
414
+
Leu
TAA
[SRA]
>SRA1050246
SRR035095.220720
454 Sequencing (SRP001816)
176
259
+
Leu
TAA
[SRA]
Identical group No.165829 (11 seq.)
>WENV170627301
FUWD013232509
[FUWD] metagenome; unknown
2313
2228
-
Leu
TAA
[ENA]
¢þ
>SRA1016798
SRR035082.32894
454 Sequencing (SRP001803)
23
108
+
Leu
TAA
[SRA]
>SRA1040219
SRR035091.61295
454 Sequencing (SRP001812)
5
90
+
Leu
TAA
[SRA]
>SRA1040434
SRR035091.97358
454 Sequencing (SRP001812)
161
76
-
Leu
TAA
[SRA]
>SRA1040861
SRR035091.160430
454 Sequencing (SRP001812)
412
327
-
Leu
TAA
[SRA]
>SRA1042045
SRR035091.332006
454 Sequencing (SRP001812)
422
337
-
Leu
TAA
[SRA]
>SRA1042521
SRR035091.401592
454 Sequencing (SRP001812)
261
176
-
Leu
TAA
[SRA]
>SRA1048073
SRR035094.102897
454 Sequencing (SRP001815)
69
154
+
Leu
TAA
[SRA]
>SRA1049105
SRR035095.20253
454 Sequencing (SRP001816)
204
119
-
Leu
TAA
[SRA]
>SRA1049118
SRR035095.23116
454 Sequencing (SRP001816)
271
186
-
Leu
TAA
[SRA]
>SRA1049950
SRR035095.165623
454 Sequencing (SRP001816)
217
302
+
Leu
TAA
[SRA]
Identical group No.167772 (1 seq.)
>SRA1049155
SRR035095.29679
454 Sequencing (SRP001816)
139
223
+
Leu
TAA
[SRA]
Identical group No.167791 (1 seq.)
>SRA1050652
SRR035095.314063
454 Sequencing (SRP001816)
362
280
-
Leu
TAA
[SRA]
Identical group No.167792 (1 seq.)
>SRA1050666
SRR035095.318368
454 Sequencing (SRP001816)
252
337
+
Leu
TAA
[SRA]
Identical group No.223680 (1 seq.)
>SRA1049248
SRR035095.44259
454 Sequencing (SRP001816)
340
423
+
Leu
TAA
[SRA]
Identical group No.256327 (1 seq.)
>SRA1050216
SRR035095.214192
454 Sequencing (SRP001816)
106
183
+
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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