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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = TAC
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237707 (1 seq.)
>SRA1049903
SRR035095.157511
454 Sequencing (SRP001816)
53
130
+
Val
TAC
[SRA]
Identical group No.254211 (4 seq.)
>WENV170620343
FUWD013030001
[FUWD] metagenome; unknown
5555
5478
-
Val
TAC
[ENA]
¢þ
>WENV170628481
FUWD013247602
[FUWD] metagenome; unknown
5555
5478
-
Val
TAC
[ENA]
¢þ
>SRA1040158
SRR035091.50034
454 Sequencing (SRP001812)
210
286
+
Val
TAC
[SRA]
>SRA1049133
SRR035095.26020
454 Sequencing (SRP001816)
146
223
+
Val
TAC
[SRA]
Identical group No.256303 (1 seq.)
>SRA1049199
SRR035095.36559
454 Sequencing (SRP001816)
201
124
-
Val
TAC
[SRA]
Identical group No.256316 (1 seq.)
>SRA1049785
SRR035095.138290
454 Sequencing (SRP001816)
412
335
-
Val
TAC
[SRA]
Identical group No.286930 (77 seq.)
>W131099358
AOTF01000014
Unclassified
candidate division SR1 bacterium MGEHA [AOTF]
87930
88006
+
Val
TAC
[ENA]
¡û
>WENV180000433
FLNV01000065
[FLNV] bioreactor metagenome; Moose rumen
6885
6809
-
Val
TAC
[ENA]
¢þ
>WENV180226135
OBBP01062399
[OBBP] human oral metagenome; human oral
55
131
+
Val
TAC
[ENA]
¢þ
>WENV180685589
OCVV012874392
[OCVV] gut metagenome; gut
4
79
+
Val
TAC
[ENA]
¢þ
>WENV180685590
OCVV012874392
[OCVV] gut metagenome; gut
4
79
+
Val
TAC
[ENA]
¢þ
>WENV180707711
ODFJ01000007
[ODFJ] human metagenome; G_DNA_Tongue dorsum
46307
46383
+
Val
TAC
[ENA]
¢þ
>WENV180722837
ODGM01028830
[ODGM] human metagenome; G_DNA_Palatine Tonsils
245
321
+
Val
TAC
[ENA]
¢þ
>WENV180728291
ODGU01036391
[ODGU] human metagenome; G_DNA_Supragingival plaque
60
136
+
Val
TAC
[ENA]
¢þ
>WENV180728951
ODGU01130298
[ODGU] human metagenome; G_DNA_Supragingival plaque
98
174
+
Val
TAC
[ENA]
¢þ
>WENV180734204
ODGZ01003734
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2375
2299
-
Val
TAC
[ENA]
¢þ
>WENV180746350
ODHM01083578
[ODHM] human metagenome; G_DNA_Buccal mucosa
150
74
-
Val
TAC
[ENA]
¢þ
>WENV180751430
ODHS01053176
[ODHS] human metagenome; G_DNA_Supragingival plaque
756
680
-
Val
TAC
[ENA]
¢þ
>WENV180767344
ODIG01000001
[ODIG] human metagenome; G_DNA_Tongue dorsum
36024
36100
+
Val
TAC
[ENA]
¢þ
>WENV180773290
ODIJ01000018
[ODIJ] human metagenome; G_DNA_Tongue dorsum
62693
62617
-
Val
TAC
[ENA]
¢þ
>WENV180776796
ODIK01145547
[ODIK] human metagenome; G_DNA_Tongue dorsum
215
291
+
Val
TAC
[ENA]
¢þ
>WENV180787072
ODIS01001100
[ODIS] human metagenome; G_DNA_Supragingival plaque
12632
12556
-
Val
TAC
[ENA]
¢þ
>WENV180790831
ODIT01045380
[ODIT] human metagenome; G_DNA_Tongue dorsum
412
336
-
Val
TAC
[ENA]
¢þ
>WENV180806585
ODJH01073166
[ODJH] human metagenome; G_DNA_Tongue dorsum
113
189
+
Val
TAC
[ENA]
¢þ
>WENV180806790
ODJI01000026
[ODJI] human metagenome; G_DNA_Tongue dorsum
45270
45346
+
Val
TAC
[ENA]
¢þ
>WENV180810298
ODJK01207447
[ODJK] human metagenome; G_DNA_Subgingival plaque
145
221
+
Val
TAC
[ENA]
¢þ
>WENV180812995
ODJO01000009
[ODJO] human metagenome; G_DNA_Supragingival plaque
87814
87890
+
Val
TAC
[ENA]
¢þ
>WENV180824796
ODJX01054396
[ODJX] human metagenome; G_DNA_Supragingival plaque
46
122
+
Val
TAC
[ENA]
¢þ
>WENV180832112
ODKC01000515
[ODKC] human metagenome; G_DNA_Supragingival plaque
34603
34527
-
Val
TAC
[ENA]
¢þ
>WENV180834006
ODKD01001725
[ODKD] human metagenome; G_DNA_Supragingival plaque
2235
2159
-
Val
TAC
[ENA]
¢þ
>WENV180834843
ODKE01000032
[ODKE] human metagenome; G_DNA_Supragingival plaque
59635
59559
-
Val
TAC
[ENA]
¢þ
>WENV180847513
ODKT01096634
[ODKT] human metagenome; G_DNA_Supragingival plaque
5
81
+
Val
TAC
[ENA]
¢þ
>WENV180852159
ODKW01000031
[ODKW] human metagenome; G_DNA_Tongue dorsum
21854
21930
+
Val
TAC
[ENA]
¢þ
>WENV180862402
ODLE01114328
[ODLE] human metagenome; G_DNA_Tongue dorsum
208
132
-
Val
TAC
[ENA]
¢þ
>WENV180872668
ODLP01000006
[ODLP] human metagenome; G_DNA_Tongue dorsum
203133
203057
-
Val
TAC
[ENA]
¢þ
>WENV180882315
ODMC01000006
[ODMC] human metagenome; G_DNA_Tongue dorsum
209268
209192
-
Val
TAC
[ENA]
¢þ
>WENV180888575
ODMN01001694
[ODMN] human metagenome; G_DNA_Supragingival plaque
2941
2865
-
Val
TAC
[ENA]
¢þ
>WENV180901283
ODOJ01109879
[ODOJ] human metagenome; G_DNA_Tongue dorsum
36
112
+
Val
TAC
[ENA]
¢þ
>WENV180916363
ODTD01000003
[ODTD] human metagenome; G_DNA_Tongue dorsum
234712
234636
-
Val
TAC
[ENA]
¢þ
>WENV180921256
ODTJ01000010
[ODTJ] human metagenome; G_DNA_Supragingival plaque
86397
86473
+
Val
TAC
[ENA]
¢þ
>WENV180923707
ODTK01000099
[ODTK] human metagenome; G_DNA_Supragingival plaque
70570
70494
-
Val
TAC
[ENA]
¢þ
>WENV180930557
ODTP01000081
[ODTP] human metagenome; G_DNA_Tongue dorsum
65431
65507
+
Val
TAC
[ENA]
¢þ
>WENV180938928
ODTX01009915
[ODTX] human metagenome; G_DNA_Supragingival plaque
186
110
-
Val
TAC
[ENA]
¢þ
>WENV180944994
ODUC01055554
[ODUC] human metagenome; G_DNA_Supragingival plaque
134
58
-
Val
TAC
[ENA]
¢þ
>WENV180947836
ODUG01000056
[ODUG] human metagenome; G_DNA_Tongue dorsum
82310
82386
+
Val
TAC
[ENA]
¢þ
>WENV180952198
ODUH01165144
[ODUH] human metagenome; G_DNA_Subgingival plaque
264
188
-
Val
TAC
[ENA]
¢þ
>WENV180954962
ODUJ01018223
[ODUJ] human metagenome; G_DNA_Tongue dorsum
1194
1270
+
Val
TAC
[ENA]
¢þ
>WENV180975361
ODUY01005049
[ODUY] human metagenome; G_DNA_Supragingival plaque
3397
3473
+
Val
TAC
[ENA]
¢þ
>WENV180978055
ODUZ01016146
[ODUZ] human metagenome; G_DNA_Tongue dorsum
1194
1270
+
Val
TAC
[ENA]
¢þ
>WENV180979281
ODVC01000062
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
71356
71280
-
Val
TAC
[ENA]
¢þ
>WENV180983318
ODVF01007639
[ODVF] human metagenome; G_DNA_Supragingival plaque
80
4
-
Val
TAC
[ENA]
¢þ
>WENV180984819
ODVJ01000047
[ODVJ] human metagenome; G_DNA_Tongue dorsum
20472
20548
+
Val
TAC
[ENA]
¢þ
>WENV180987480
ODVK01028196
[ODVK] human metagenome; G_DNA_Supragingival plaque
778
854
+
Val
TAC
[ENA]
¢þ
>WENV180989864
ODVN01000134
[ODVN] human metagenome; G_DNA_Tongue dorsum
62682
62606
-
Val
TAC
[ENA]
¢þ
>WENV180991782
ODVO01001908
[ODVO] human metagenome; G_DNA_Buccal mucosa
42
118
+
Val
TAC
[ENA]
¢þ
>WENV181000054
ODVT01178409
[ODVT] human metagenome; G_DNA_Buccal mucosa
175
251
+
Val
TAC
[ENA]
¢þ
>WENV181003606
ODVX01019208
[ODVX] human metagenome; G_DNA_Supragingival plaque
190
114
-
Val
TAC
[ENA]
¢þ
>WENV181008764
ODWE01012927
[ODWE] human metagenome; G_DNA_Supragingival plaque
227
151
-
Val
TAC
[ENA]
¢þ
>WENV181018956
ODWU01000238
[ODWU] human metagenome; G_DNA_Supragingival plaque
36539
36463
-
Val
TAC
[ENA]
¢þ
>WENV181042842
ODXU01010488
[ODXU] human metagenome; G_DNA_Buccal mucosa
184
108
-
Val
TAC
[ENA]
¢þ
>WENV181043583
ODXV01000157
[ODXV] human metagenome; G_DNA_Tongue dorsum
671
747
+
Val
TAC
[ENA]
¢þ
>WENV181049878
ODYD01002857
[ODYD] human metagenome; G_DNA_Supragingival plaque
3867
3791
-
Val
TAC
[ENA]
¢þ
>WENV181052045
ODYE01014532
[ODYE] human metagenome; G_DNA_Tongue dorsum
796
872
+
Val
TAC
[ENA]
¢þ
>WENV181059794
ODYM01010773
[ODYM] human metagenome; G_DNA_Tongue dorsum
500
424
-
Val
TAC
[ENA]
¢þ
>WENV181073260
OEAO01000060
[OEAO] human metagenome; G_DNA_Tongue dorsum
25147
25071
-
Val
TAC
[ENA]
¢þ
>WENV181077033
OEAP01022244
[OEAP] human metagenome; G_DNA_Supragingival plaque
884
960
+
Val
TAC
[ENA]
¢þ
>WENV181081372
OEAS01189735
[OEAS] human metagenome; G_DNA_Supragingival plaque
295
371
+
Val
TAC
[ENA]
¢þ
>WENV181083678
OEAV01017174
[OEAV] human metagenome; G_DNA_Supragingival plaque
194
118
-
Val
TAC
[ENA]
¢þ
>WENV181084855
OEAX01000226
[OEAX] human metagenome; G_DNA_Tongue dorsum
37004
37080
+
Val
TAC
[ENA]
¢þ
>WENV181085915
OEAY01000007
[OEAY] human metagenome; G_DNA_Tongue dorsum
45061
45137
+
Val
TAC
[ENA]
¢þ
>WENV181115573
OEEO01139687
[OEEO] human metagenome; G_DNA_Supragingival plaque
158
234
+
Val
TAC
[ENA]
¢þ
>WENV181125858
OEFU01062368
[OEFU] human metagenome; G_DNA_Saliva
311
235
-
Val
TAC
[ENA]
¢þ
>WENV181138153
OEGJ01137451
[OEGJ] human metagenome; G_DNA_Supragingival plaque
13
89
+
Val
TAC
[ENA]
¢þ
>WENV181140589
OEGT01000003
[OEGT] human metagenome; G_DNA_Throat
211297
211221
-
Val
TAC
[ENA]
¢þ
>WENV181150312
OEHW01001449
[OEHW] human metagenome; G_DNA_Tongue dorsum
5748
5672
-
Val
TAC
[ENA]
¢þ
>WENV181182736
OEJV01037060
[OEJV] human metagenome; G_DNA_Supragingival plaque
207
131
-
Val
TAC
[ENA]
¢þ
>WENV181367914
OFQD01006509
[OFQD] freshwater metagenome; Freshwater Lake
454
378
-
Val
TAC
[ENA]
¢þ
>WENV181395465
OFSA01000100
[OFSA] freshwater metagenome; Freshwater Lake
403
327
-
Val
TAC
[ENA]
¢þ
>WENV183712165
PDWI01090922
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2211
2287
+
Val
TAC
[ENA]
¢þ
>WENV183719865
PDWJ01021839
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2700
2776
+
Val
TAC
[ENA]
¢þ
>W1910784339
MPSQ01000001
Unclassified
SR1 bacterium human oral taxon HOT-345 [MPSQ]
842129
842053
-
Val
TAC
[ENA]
¡û
>SRA1019559
SRR035082.476129
454 Sequencing (SRP001803)
17
93
+
Val
TAC
[SRA]
>SRA1050404
SRR035095.255790
454 Sequencing (SRP001816)
263
187
-
Val
TAC
[SRA]
Identical group No.357788 (2 seq.)
>WENV170605034
FUWD010442269
[FUWD] metagenome; unknown
620
696
+
Val
TAC
[ENA]
¢þ
>SRA1049116
SRR035095.22902
454 Sequencing (SRP001816)
195
271
+
Val
TAC
[SRA]
Identical group No.357951 (2 seq.)
>WENV170607736
FUWD010853178
[FUWD] metagenome; unknown
203
279
+
Val
TAC
[ENA]
¢þ
>SRA1050143
SRR035095.200187
454 Sequencing (SRP001816)
297
221
-
Val
TAC
[SRA]
Identical group No.357982 (4 seq.)
>WENV170608074
FUWD010889842
[FUWD] metagenome; unknown
340
416
+
Val
TAC
[ENA]
¢þ
>SRA1036837
SRR035090.20283
454 Sequencing (SRP001811)
345
421
+
Val
TAC
[SRA]
>SRA1037171
SRR035090.87210
454 Sequencing (SRP001811)
286
362
+
Val
TAC
[SRA]
>SRA1050474
SRR035095.269848
454 Sequencing (SRP001816)
255
331
+
Val
TAC
[SRA]
Identical group No.358353 (4 seq.)
>WENV170612454
FUWD012614151
[FUWD] metagenome; unknown
214
138
-
Val
TAC
[ENA]
¢þ
>SRA1040943
SRR035091.171702
454 Sequencing (SRP001812)
263
187
-
Val
TAC
[SRA]
>SRA1044282
SRR035092.252538
454 Sequencing (SRP001813)
207
131
-
Val
TAC
[SRA]
>SRA1050282
SRR035095.229941
454 Sequencing (SRP001816)
218
294
+
Val
TAC
[SRA]
Identical group No.358402 (4 seq.)
>WENV170612796
FUWD012691197
[FUWD] metagenome; unknown
84
160
+
Val
TAC
[ENA]
¢þ
>SRA1044889
SRR035092.367338
454 Sequencing (SRP001813)
230
154
-
Val
TAC
[SRA]
>SRA1049508
SRR035095.87911
454 Sequencing (SRP001816)
94
170
+
Val
TAC
[SRA]
>SRA1049990
SRR035095.172316
454 Sequencing (SRP001816)
94
170
+
Val
TAC
[SRA]
Identical group No.358959 (7 seq.)
>WENV170627299
FUWD013232509
[FUWD] metagenome; unknown
6719
6643
-
Val
TAC
[ENA]
¢þ
>SRA1018912
SRR035082.369383
454 Sequencing (SRP001803)
68
144
+
Val
TAC
[SRA]
>SRA1041948
SRR035091.317732
454 Sequencing (SRP001812)
168
244
+
Val
TAC
[SRA]
>SRA1042475
SRR035091.393844
454 Sequencing (SRP001812)
274
198
-
Val
TAC
[SRA]
>SRA1049324
SRR035095.56916
454 Sequencing (SRP001816)
381
305
-
Val
TAC
[SRA]
>SRA1049789
SRR035095.139208
454 Sequencing (SRP001816)
27
103
+
Val
TAC
[SRA]
>SRA1049873
SRR035095.150897
454 Sequencing (SRP001816)
45
121
+
Val
TAC
[SRA]
Identical group No.372124 (3 seq.)
>SRA1049090
SRR035095.18252
454 Sequencing (SRP001816)
445
521
+
Val
TAC
[SRA]
>SRA1049217
SRR035095.39326
454 Sequencing (SRP001816)
446
522
+
Val
TAC
[SRA]
>SRA1049237
SRR035095.42479
454 Sequencing (SRP001816)
445
521
+
Val
TAC
[SRA]
Identical group No.372173 (1 seq.)
>SRA1049702
SRR035095.121695
454 Sequencing (SRP001816)
304
230
-
Val
TAC
[SRA]
Identical group No.372194 (1 seq.)
>SRA1049998
SRR035095.173836
454 Sequencing (SRP001816)
292
368
+
Val
TAC
[SRA]
Identical group No.372216 (1 seq.)
>SRA1050355
SRR035095.242792
454 Sequencing (SRP001816)
176
250
+
Val
TAC
[SRA]
Identical group No.372219 (1 seq.)
>SRA1050423
SRR035095.259706
454 Sequencing (SRP001816)
87
161
+
Val
TAC
[SRA]
Identical group No.372223 (1 seq.)
>SRA1050479
SRR035095.270888
454 Sequencing (SRP001816)
213
286
+
Val
TAC
[SRA]
Identical group No.453226 (9 seq.)
>WENV170017945
BARV01000952
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
1298
1223
-
Val
TAC
[ENA]
¢þ
>WENV170600988
FUWD010151795
[FUWD] metagenome; unknown
223
298
+
Val
TAC
[ENA]
¢þ
>WENV170678084
LDZT01010984
[LDZT] terrestrial metagenome; oil reservoir sample SB1
692
617
-
Val
TAC
[ENA]
¢þ
>SRA1025553
SRR035085.38318
454 Sequencing (SRP001806)
391
316
-
Val
TAC
[SRA]
>SRA1026551
SRR035085.226836
454 Sequencing (SRP001806)
348
273
-
Val
TAC
[SRA]
>SRA1035534
SRR035089.326197
454 Sequencing (SRP001810)
75
1
-
Val
TAC
[SRA]
>SRA1035987
SRR035089.421457
454 Sequencing (SRP001810)
151
226
+
Val
TAC
[SRA]
>SRA1036489
SRR035089.532127
454 Sequencing (SRP001810)
223
298
+
Val
TAC
[SRA]
>SRA1050279
SRR035095.229451
454 Sequencing (SRP001816)
291
366
+
Val
TAC
[SRA]
Identical group No.484116 (4 seq.)
>WENV170607897
FUWD010869273
[FUWD] metagenome; unknown
181
106
-
Val
TAC
[ENA]
¢þ
>WENV170699682
LGVF01622485
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
205
133
-
Val
TAC
[ENA]
¢þ
>SRA1029237
SRR035087.96224
454 Sequencing (SRP001808)
299
224
-
Val
TAC
[SRA]
>SRA1049997
SRR035095.173836
454 Sequencing (SRP001816)
199
274
+
Val
TAC
[SRA]
Identical group No.486102 (7 seq.)
>W141247360
CBKU010000498
Alphaproteobacteria
Tistlia consotensis USBA 355 [CBKU]
442
517
+
Val
TAC
[ENA]
¡û
>WENV170897679
MDTD01115711
[MDTD] marine metagenome; seawater
1884
1809
-
Val
TAC
[ENA]
¢þ
>W1910547475
FZNU01000008
Alphaproteobacteria
Tistlia consotensis DSM 21585 [FZNU]
82581
82506
-
Val
TAC
[ENA]
¡û
>W1911411001
NWUC01000004
Alphaproteobacteria
Pararhizobium haloflavum XC0140 [NWUC]
59667
59742
+
Val
TAC
[ENA]
¡û
>W1810064646
PDVP01000006
Alphaproteobacteria
Zhengella mangrovi X9-2-2 [PDVP]
43086
43161
+
Val
TAC
[ENA]
¡û
>SRA1049396
SRR035095.70074
454 Sequencing (SRP001816)
326
251
-
Val
TAC
[SRA]
>W1710607244
FWZX01000008
Alphaproteobacteria
Tistlia consotensis [FWZX]
97358
97433
+
Val
TAC
[ENA]
¡û
Identical group No.506981 (17 seq.)
>W1711662215
MQUF01000025
Thermodesulfobacteriota
Desulfobulbaceae bacterium DB1 [MQUF]
93114
93189
+
Val
TAC
[ENA]
¡û
>WENV183705417
PDWI01001522
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
45859
45784
-
Val
TAC
[ENA]
¢þ
>WENV183706010
PDWI01002914
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
23
-
Val
TAC
[ENA]
¢þ
>WENV183718763
PDWJ01006422
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1797
1872
+
Val
TAC
[ENA]
¢þ
>WENV183721600
PDWJ01076947
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
228
153
-
Val
TAC
[ENA]
¢þ
>WENV170007801
AMWB02158523
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
55503
55578
+
Val
TAC
[ENA]
¢þ
>WENV170612186
FUWD012527490
[FUWD] metagenome; unknown
210
285
+
Val
TAC
[ENA]
¢þ
>WENV170642164
JFJP01039360
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3815
3740
-
Val
TAC
[ENA]
¢þ
>SRA1033260
SRR035088.209728
454 Sequencing (SRP001809)
210
285
+
Val
TAC
[SRA]
>SRA1038533
SRR035090.322459
454 Sequencing (SRP001811)
110
185
+
Val
TAC
[SRA]
>SRA1049085
SRR035095.17175
454 Sequencing (SRP001816)
54
129
+
Val
TAC
[SRA]
>SRA1053963
SRR035099.17647
454 Sequencing (SRP001820)
84
9
-
Val
TAC
[SRA]
>SRA1054438
SRR035099.133243
454 Sequencing (SRP001820)
296
221
-
Val
TAC
[SRA]
>SRA1054555
SRR035099.161489
454 Sequencing (SRP001820)
36
111
+
Val
TAC
[SRA]
>C161069063
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
357276
357201
-
Val
TAC
[Ensembl]
¡û
>C131010882
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
3090200
3090275
+
Val
TAC
[Ensembl]
¡û
>WENV078110
AAFY01022051
Fossil microbial community from Whale Fall (Santa Cruz Basin)
689
614
-
Val
TAC
[ENA]
Identical group No.547537 (5 seq.)
>WENV170600381
FUWD010122759
[FUWD] metagenome; unknown
426
351
-
Val
TAC
[ENA]
¢þ
>WENV170626272
FUWD013217947
[FUWD] metagenome; unknown
228
153
-
Val
TAC
[ENA]
¢þ
>SRA1044742
SRR035092.332680
454 Sequencing (SRP001813)
147
72
-
Val
TAC
[SRA]
>SRA1049276
SRR035095.48985
454 Sequencing (SRP001816)
381
456
+
Val
TAC
[SRA]
>SRA1049308
SRR035095.54583
454 Sequencing (SRP001816)
380
455
+
Val
TAC
[SRA]
Identical group No.547990 (3 seq.)
>WENV170608029
FUWD010884564
[FUWD] metagenome; unknown
49
124
+
Val
TAC
[ENA]
¢þ
>SRA1033126
SRR035088.179648
454 Sequencing (SRP001809)
28
103
+
Val
TAC
[SRA]
>SRA1050000
SRR035095.174358
454 Sequencing (SRP001816)
451
376
-
Val
TAC
[SRA]
Identical group No.548897 (5 seq.)
>WENV170624851
FUWD013187968
[FUWD] metagenome; unknown
7647
7722
+
Val
TAC
[ENA]
¢þ
>WENV170633119
FUWD013391785
[FUWD] metagenome; unknown
7647
7722
+
Val
TAC
[ENA]
¢þ
>SRA1032427
SRR035088.5667
454 Sequencing (SRP001809)
42
117
+
Val
TAC
[SRA]
>SRA1049081
SRR035095.16365
454 Sequencing (SRP001816)
344
269
-
Val
TAC
[SRA]
>SRA1049610
SRR035095.104604
454 Sequencing (SRP001816)
223
148
-
Val
TAC
[SRA]
Identical group No.563105 (1 seq.)
>SRA1049798
SRR035095.140255
454 Sequencing (SRP001816)
535
460
-
Val
TAC
[SRA]
Identical group No.563106 (1 seq.)
>SRA1049825
SRR035095.143729
454 Sequencing (SRP001816)
31
104
+
Val
TAC
[SRA]
Identical group No.563111 (2 seq.)
>SRA1049879
SRR035095.152926
454 Sequencing (SRP001816)
9
82
+
Val
TAC
[SRA]
>SRA1050200
SRR035095.211425
454 Sequencing (SRP001816)
9
82
+
Val
TAC
[SRA]
Identical group No.654347 (2 seq.)
>SRA1026330
SRR035085.186750
454 Sequencing (SRP001806)
105
31
-
Val
TAC
[SRA]
>SRA1050263
SRR035095.224449
454 Sequencing (SRP001816)
304
375
+
Val
TAC
[SRA]
Identical group No.654445 (14 seq.)
>WENV170617403
FUWD012925110
[FUWD] metagenome; unknown
215
289
+
Val
TAC
[ENA]
¢þ
>WENV170620115
FUWD013026149
[FUWD] metagenome; unknown
314
388
+
Val
TAC
[ENA]
¢þ
>WENV170625134
FUWD013192197
[FUWD] metagenome; unknown
5796
5870
+
Val
TAC
[ENA]
¢þ
>WENV170628245
FUWD013244005
[FUWD] metagenome; unknown
314
388
+
Val
TAC
[ENA]
¢þ
>WENV170633391
FUWD013395393
[FUWD] metagenome; unknown
5796
5870
+
Val
TAC
[ENA]
¢þ
>SRA1032466
SRR035088.18334
454 Sequencing (SRP001809)
115
41
-
Val
TAC
[SRA]
>SRA1032757
SRR035088.96577
454 Sequencing (SRP001809)
363
437
+
Val
TAC
[SRA]
>SRA1032962
SRR035088.140928
454 Sequencing (SRP001809)
363
437
+
Val
TAC
[SRA]
>SRA1032991
SRR035088.145948
454 Sequencing (SRP001809)
31
105
+
Val
TAC
[SRA]
>SRA1034058
SRR035088.470975
454 Sequencing (SRP001809)
133
59
-
Val
TAC
[SRA]
>SRA1034128
SRR035088.499737
454 Sequencing (SRP001809)
123
197
+
Val
TAC
[SRA]
>SRA1034400
SRR035089.82224
454 Sequencing (SRP001810)
314
388
+
Val
TAC
[SRA]
>SRA1034844
SRR035089.184533
454 Sequencing (SRP001810)
294
368
+
Val
TAC
[SRA]
>SRA1050028
SRR035095.178434
454 Sequencing (SRP001816)
225
299
+
Val
TAC
[SRA]
Identical group No.654636 (20 seq.)
>C171072600
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
1027283
1027212
-
Val
TAC
-
¡û
>WENV180050018
MPLU02103970
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
548
477
-
Val
TAC
[ENA]
¢þ
>WENV180061876
MPLX02250392
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
5489
5418
-
Val
TAC
[ENA]
¢þ
>WENV180082550
MPMC02233802
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
11048
11119
+
Val
TAC
[ENA]
¢þ
>WENV180091329
MPMF02188874
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
2308
2237
-
Val
TAC
[ENA]
¢þ
>WENV183797784
PVBE010363652
[PVBE] marine metagenome; water
12259
12330
+
Val
TAC
[ENA]
¢þ
>WENV170301850
CESH01075912
[CESH] marine metagenome genome assembly TARA_094_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
884
813
-
Val
TAC
[ENA]
¢þ
>WENV170484704
CEVN01039117
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
159
88
-
Val
TAC
[ENA]
¢þ
>WENV170614889
FUWD012843712
[FUWD] metagenome; unknown
4263
4192
-
Val
TAC
[ENA]
¢þ
>WENV170802915
MDSW01021178
[MDSW] marine metagenome; seawater
1660
1589
-
Val
TAC
[ENA]
¢þ
>W1810515540
QBYA01000003
Cyanobacteriota
Synechococcus sp. AG-323-O22 [QBYA]
25884
25813
-
Val
TAC
[ENA]
¡û
>W1810523142
QCKF01000009
Cyanobacteriota
Prochlorococcus sp. AG-409-L14 [QCKF]
45626
45555
-
Val
TAC
[ENA]
¡û
>SRA1027876
SRR035086.211207
454 Sequencing (SRP001807)
309
380
+
Val
TAC
[SRA]
>SRA1028546
SRR035086.354933
454 Sequencing (SRP001807)
148
77
-
Val
TAC
[SRA]
>SRA1031323
SRR035087.412661
454 Sequencing (SRP001808)
344
415
+
Val
TAC
[SRA]
>SRA1036495
SRR035089.533051
454 Sequencing (SRP001810)
185
256
+
Val
TAC
[SRA]
>SRA1049052
SRR035095.9515
454 Sequencing (SRP001816)
174
103
-
Val
TAC
[SRA]
>SRA1051264
SRR035096.123458
454 Sequencing (SRP001817)
289
360
+
Val
TAC
[SRA]
>SRA1052340
SRR035098.184348
454 Sequencing (SRP001819)
4
75
+
Val
TAC
[SRA]
>SRA1053349
SRR035098.389167
454 Sequencing (SRP001819)
185
256
+
Val
TAC
[SRA]
Identical group No.805117 (3 seq.)
>WENV170608150
FUWD010896429
[FUWD] metagenome; unknown
83
11
-
Val
TAC
[ENA]
¢þ
>SRA1042141
SRR035091.344742
454 Sequencing (SRP001812)
390
318
-
Val
TAC
[SRA]
>SRA1049868
SRR035095.150109
454 Sequencing (SRP001816)
297
369
+
Val
TAC
[SRA]
Identical group No.809574 (1 seq.)
>SRA1049300
SRR035095.53366
454 Sequencing (SRP001816)
266
193
-
Val
TAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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