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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = TAG
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80340 (1 seq.)
>SRA1049275
SRR035095.48784
454 Sequencing (SRP001816)
121
33
-
Leu
TAG
[SRA]
Identical group No.112540 (22 seq.)
>WENV170598627
FUWD010042447
[FUWD] metagenome; unknown
604
690
+
Leu
TAG
[ENA]
¢þ
>WENV170598636
FUWD010042696
[FUWD] metagenome; unknown
409
323
-
Leu
TAG
[ENA]
¢þ
>WENV170616313
FUWD012883945
[FUWD] metagenome; unknown
594
508
-
Leu
TAG
[ENA]
¢þ
>WENV170626763
FUWD013229345
[FUWD] metagenome; unknown
204
118
-
Leu
TAG
[ENA]
¢þ
>SRA1017308
SRR035082.116111
454 Sequencing (SRP001803)
138
52
-
Leu
TAG
[SRA]
>SRA1018229
SRR035082.258708
454 Sequencing (SRP001803)
329
417
+
Leu
TAG
[SRA]
>SRA1019537
SRR035082.473154
454 Sequencing (SRP001803)
192
106
-
Leu
TAG
[SRA]
>SRA1026274
SRR035085.177458
454 Sequencing (SRP001806)
151
65
-
Leu
TAG
[SRA]
>SRA1026304
SRR035085.182311
454 Sequencing (SRP001806)
153
67
-
Leu
TAG
[SRA]
>SRA1026341
SRR035085.189235
454 Sequencing (SRP001806)
153
67
-
Leu
TAG
[SRA]
>SRA1033395
SRR035088.244520
454 Sequencing (SRP001809)
151
65
-
Leu
TAG
[SRA]
>SRA1034206
SRR035089.23405
454 Sequencing (SRP001810)
415
329
-
Leu
TAG
[SRA]
>SRA1035340
SRR035089.286268
454 Sequencing (SRP001810)
47
133
+
Leu
TAG
[SRA]
>SRA1040824
SRR035091.154482
454 Sequencing (SRP001812)
277
191
-
Leu
TAG
[SRA]
>SRA1042207
SRR035091.356183
454 Sequencing (SRP001812)
73
159
+
Leu
TAG
[SRA]
>SRA1047925
SRR035094.69375
454 Sequencing (SRP001815)
348
262
-
Leu
TAG
[SRA]
>SRA1048986
SRR035094.303934
454 Sequencing (SRP001815)
38
124
+
Leu
TAG
[SRA]
>SRA1049193
SRR035095.35596
454 Sequencing (SRP001816)
371
285
-
Leu
TAG
[SRA]
>SRA1049567
SRR035095.96893
454 Sequencing (SRP001816)
189
103
-
Leu
TAG
[SRA]
>SRA1049674
SRR035095.116429
454 Sequencing (SRP001816)
444
358
-
Leu
TAG
[SRA]
>SRA1049719
SRR035095.125173
454 Sequencing (SRP001816)
267
353
+
Leu
TAG
[SRA]
>SRA1050661
SRR035095.316937
454 Sequencing (SRP001816)
214
128
-
Leu
TAG
[SRA]
Identical group No.112590 (5 seq.)
>WENV170608050
FUWD010886918
[FUWD] metagenome; unknown
374
288
-
Leu
TAG
[ENA]
¢þ
>SRA1034967
SRR035089.208746
454 Sequencing (SRP001810)
379
293
-
Leu
TAG
[SRA]
>SRA1035379
SRR035089.293750
454 Sequencing (SRP001810)
379
293
-
Leu
TAG
[SRA]
>SRA1042027
SRR035091.329138
454 Sequencing (SRP001812)
242
328
+
Leu
TAG
[SRA]
>SRA1050245
SRR035095.220720
454 Sequencing (SRP001816)
87
173
+
Leu
TAG
[SRA]
Identical group No.126348 (2 seq.)
>WENV170572792
FLOH01001301
[FLOH] marine metagenome; water
6007
6095
+
Leu
TAG
[ENA]
¢þ
>SRA1050218
SRR035095.214274
454 Sequencing (SRP001816)
273
359
+
Leu
TAG
[SRA]
Identical group No.131702 (3 seq.)
>WENV170612508
FUWD012626244
[FUWD] metagenome; unknown
10
94
+
Leu
TAG
[ENA]
¢þ
>SRA1041915
SRR035091.315417
454 Sequencing (SRP001812)
10
94
+
Leu
TAG
[SRA]
>SRA1050040
SRR035095.180394
454 Sequencing (SRP001816)
254
170
-
Leu
TAG
[SRA]
Identical group No.131831 (6 seq.)
>WENV170624850
FUWD013187968
[FUWD] metagenome; unknown
1742
1828
+
Leu
TAG
[ENA]
¢þ
>WENV170633118
FUWD013391785
[FUWD] metagenome; unknown
1742
1828
+
Leu
TAG
[ENA]
¢þ
>SRA1048445
SRR035094.174652
454 Sequencing (SRP001815)
125
211
+
Leu
TAG
[SRA]
>SRA1049026
SRR035094.318296
454 Sequencing (SRP001815)
29
115
+
Leu
TAG
[SRA]
>SRA1049226
SRR035095.40571
454 Sequencing (SRP001816)
401
315
-
Leu
TAG
[SRA]
>SRA1049515
SRR035095.88765
454 Sequencing (SRP001816)
401
315
-
Leu
TAG
[SRA]
Identical group No.131847 (13 seq.)
>WENV170627201
FUWD013231996
[FUWD] metagenome; unknown
1789
1704
-
Leu
TAG
[ENA]
¢þ
>WENV170632588
FUWD013384757
[FUWD] metagenome; unknown
1789
1704
-
Leu
TAG
[ENA]
¢þ
>SRA1021330
SRR035083.243374
454 Sequencing (SRP001804)
232
317
+
Leu
TAG
[SRA]
>SRA1032525
SRR035088.38294
454 Sequencing (SRP001809)
29
114
+
Leu
TAG
[SRA]
>SRA1042745
SRR035091.439336
454 Sequencing (SRP001812)
106
191
+
Leu
TAG
[SRA]
>SRA1042801
SRR035091.449133
454 Sequencing (SRP001812)
49
134
+
Leu
TAG
[SRA]
>SRA1042911
SRR035091.466299
454 Sequencing (SRP001812)
69
154
+
Leu
TAG
[SRA]
>SRA1043905
SRR035092.192247
454 Sequencing (SRP001813)
40
125
+
Leu
TAG
[SRA]
>SRA1044807
SRR035092.348371
454 Sequencing (SRP001813)
327
242
-
Leu
TAG
[SRA]
>SRA1047830
SRR035094.49965
454 Sequencing (SRP001815)
169
254
+
Leu
TAG
[SRA]
>SRA1049553
SRR035095.95045
454 Sequencing (SRP001816)
489
404
-
Leu
TAG
[SRA]
>SRA1049617
SRR035095.105209
454 Sequencing (SRP001816)
135
50
-
Leu
TAG
[SRA]
>SRA1050424
SRR035095.259770
454 Sequencing (SRP001816)
313
228
-
Leu
TAG
[SRA]
Identical group No.134869 (1 seq.)
>SRA1049820
SRR035095.142740
454 Sequencing (SRP001816)
413
499
+
Leu
TAG
[SRA]
Identical group No.153913 (2 seq.)
>SRA1036222
SRR035089.474132
454 Sequencing (SRP001810)
209
294
+
Leu
TAG
[SRA]
>SRA1049972
SRR035095.170539
454 Sequencing (SRP001816)
261
346
+
Leu
TAG
[SRA]
Identical group No.165748 (2 seq.)
>WENV170612825
FUWD012697131
[FUWD] metagenome; unknown
162
246
+
Leu
TAG
[ENA]
¢þ
>SRA1050030
SRR035095.179014
454 Sequencing (SRP001816)
172
256
+
Leu
TAG
[SRA]
Identical group No.167774 (1 seq.)
>SRA1049368
SRR035095.65117
454 Sequencing (SRP001816)
196
281
+
Leu
TAG
[SRA]
Identical group No.167785 (1 seq.)
>SRA1050350
SRR035095.242374
454 Sequencing (SRP001816)
90
8
-
Leu
TAG
[SRA]
Identical group No.167786 (1 seq.)
>SRA1050382
SRR035095.248714
454 Sequencing (SRP001816)
82
164
+
Leu
TAG
[SRA]
Identical group No.167793 (1 seq.)
>SRA1050682
SRR035095.325434
454 Sequencing (SRP001816)
121
36
-
Leu
TAG
[SRA]
Identical group No.180251 (10 seq.)
>WENV170570371
FLOH01000001
[FLOH] marine metagenome; water
1320815
1320733
-
Leu
TAG
[ENA]
¢þ
>WENV170620422
FUWD013031467
[FUWD] metagenome; unknown
702
784
+
Leu
TAG
[ENA]
¢þ
>WENV170620945
FUWD013044153
[FUWD] metagenome; unknown
1064
1148
+
Leu
TAG
[ENA]
¢þ
>WENV170628567
FUWD013248980
[FUWD] metagenome; unknown
702
784
+
Leu
TAG
[ENA]
¢þ
>WENV170629102
FUWD013261100
[FUWD] metagenome; unknown
1064
1148
+
Leu
TAG
[ENA]
¢þ
>SRA1032834
SRR035088.111747
454 Sequencing (SRP001809)
129
213
+
Leu
TAG
[SRA]
>SRA1035838
SRR035089.385389
454 Sequencing (SRP001810)
271
187
-
Leu
TAG
[SRA]
>SRA1038293
SRR035090.281612
454 Sequencing (SRP001811)
240
324
+
Leu
TAG
[SRA]
>SRA1041598
SRR035091.268024
454 Sequencing (SRP001812)
349
265
-
Leu
TAG
[SRA]
>SRA1049592
SRR035095.100230
454 Sequencing (SRP001816)
140
224
+
Leu
TAG
[SRA]
Identical group No.186124 (7 seq.)
>WENV170623057
FUWD013134466
[FUWD] metagenome; unknown
857
773
-
Leu
TAG
[ENA]
¢þ
>WENV170631291
FUWD013347484
[FUWD] metagenome; unknown
857
773
-
Leu
TAG
[ENA]
¢þ
>SRA1032236
SRR035087.584000
454 Sequencing (SRP001808)
75
159
+
Leu
TAG
[SRA]
>SRA1032935
SRR035088.133644
454 Sequencing (SRP001809)
130
46
-
Leu
TAG
[SRA]
>SRA1033623
SRR035088.306495
454 Sequencing (SRP001809)
145
229
+
Leu
TAG
[SRA]
>SRA1034010
SRR035088.446502
454 Sequencing (SRP001809)
129
45
-
Leu
TAG
[SRA]
>SRA1049687
SRR035095.119375
454 Sequencing (SRP001816)
277
193
-
Leu
TAG
[SRA]
Identical group No.198067 (3 seq.)
>WENV170605133
FUWD010453213
[FUWD] metagenome; unknown
209
293
+
Leu
TAG
[ENA]
¢þ
>SRA1048679
SRR035094.225298
454 Sequencing (SRP001815)
168
252
+
Leu
TAG
[SRA]
>SRA1049083
SRR035095.16855
454 Sequencing (SRP001816)
98
14
-
Leu
TAG
[SRA]
Identical group No.198194 (4 seq.)
>WENV170612668
FUWD012654587
[FUWD] metagenome; unknown
261
179
-
Leu
TAG
[ENA]
¢þ
>WENV170613104
FUWD012780438
[FUWD] metagenome; unknown
531
447
-
Leu
TAG
[ENA]
¢þ
>SRA1044639
SRR035092.315173
454 Sequencing (SRP001813)
261
179
-
Leu
TAG
[SRA]
>SRA1049894
SRR035095.155684
454 Sequencing (SRP001816)
152
234
+
Leu
TAG
[SRA]
Identical group No.198197 (4 seq.)
>WENV170612779
FUWD012687063
[FUWD] metagenome; unknown
93
12
-
Leu
TAG
[ENA]
¢þ
>SRA1049035
SRR035095.1052
454 Sequencing (SRP001816)
103
22
-
Leu
TAG
[SRA]
>SRA1049151
SRR035095.28831
454 Sequencing (SRP001816)
103
22
-
Leu
TAG
[SRA]
>SRA1049170
SRR035095.32220
454 Sequencing (SRP001816)
268
187
-
Leu
TAG
[SRA]
Identical group No.198267 (7 seq.)
>WENV170621628
FUWD013066535
[FUWD] metagenome; unknown
1388
1470
+
Leu
TAG
[ENA]
¢þ
>WENV170629810
FUWD013282509
[FUWD] metagenome; unknown
1388
1470
+
Leu
TAG
[ENA]
¢þ
>SRA1018938
SRR035082.373096
454 Sequencing (SRP001803)
110
28
-
Leu
TAG
[SRA]
>SRA1018945
SRR035082.374313
454 Sequencing (SRP001803)
79
161
+
Leu
TAG
[SRA]
>SRA1019543
SRR035082.474789
454 Sequencing (SRP001803)
107
189
+
Leu
TAG
[SRA]
>SRA1042387
SRR035091.380447
454 Sequencing (SRP001812)
237
155
-
Leu
TAG
[SRA]
>SRA1050270
SRR035095.226368
454 Sequencing (SRP001816)
99
181
+
Leu
TAG
[SRA]
Identical group No.198290 (4 seq.)
>WENV170623120
FUWD013137084
[FUWD] metagenome; unknown
580
662
+
Leu
TAG
[ENA]
¢þ
>WENV170631359
FUWD013349898
[FUWD] metagenome; unknown
580
662
+
Leu
TAG
[ENA]
¢þ
>SRA1048591
SRR035094.204753
454 Sequencing (SRP001815)
179
261
+
Leu
TAG
[SRA]
>SRA1050086
SRR035095.189467
454 Sequencing (SRP001816)
13
95
+
Leu
TAG
[SRA]
Identical group No.198293 (4 seq.)
>WENV170623342
FUWD013146550
[FUWD] metagenome; unknown
956
1038
+
Leu
TAG
[ENA]
¢þ
>WENV170631570
FUWD013357418
[FUWD] metagenome; unknown
5529
5447
-
Leu
TAG
[ENA]
¢þ
>SRA1048401
SRR035094.165731
454 Sequencing (SRP001815)
145
227
+
Leu
TAG
[SRA]
>SRA1049680
SRR035095.118005
454 Sequencing (SRP001816)
327
245
-
Leu
TAG
[SRA]
Identical group No.198301 (5 seq.)
>WENV170625023
FUWD013190287
[FUWD] metagenome; unknown
951
1035
+
Leu
TAG
[ENA]
¢þ
>WENV170633279
FUWD013393750
[FUWD] metagenome; unknown
951
1035
+
Leu
TAG
[ENA]
¢þ
>WENV170698967
LGVF01449915
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
139
55
-
Leu
TAG
[ENA]
¢þ
>SRA1050128
SRR035095.196515
454 Sequencing (SRP001816)
228
144
-
Leu
TAG
[SRA]
>SRA1050336
SRR035095.239971
454 Sequencing (SRP001816)
51
135
+
Leu
TAG
[SRA]
Identical group No.201106 (2 seq.)
>WENV180591972
OCOV01150528
[OCOV] marine metagenome; ENVO:01000301
97
15
-
Leu
TAG
[ENA]
¢þ
>SRA1049385
SRR035095.67786
454 Sequencing (SRP001816)
252
336
+
Leu
TAG
[SRA]
Identical group No.201107 (1 seq.)
>SRA1049425
SRR035095.75667
454 Sequencing (SRP001816)
297
379
+
Leu
TAG
[SRA]
Identical group No.201108 (1 seq.)
>SRA1049602
SRR035095.103049
454 Sequencing (SRP001816)
107
191
+
Leu
TAG
[SRA]
Identical group No.201109 (1 seq.)
>SRA1049635
SRR035095.108490
454 Sequencing (SRP001816)
341
257
-
Leu
TAG
[SRA]
Identical group No.201112 (1 seq.)
>SRA1050233
SRR035095.217305
454 Sequencing (SRP001816)
350
266
-
Leu
TAG
[SRA]
Identical group No.201116 (1 seq.)
>SRA1050626
SRR035095.309246
454 Sequencing (SRP001816)
135
219
+
Leu
TAG
[SRA]
Identical group No.201117 (2 seq.)
>SRA1032835
SRR035088.112206
454 Sequencing (SRP001809)
139
55
-
Leu
TAG
[SRA]
>SRA1050693
SRR035095.329395
454 Sequencing (SRP001816)
146
62
-
Leu
TAG
[SRA]
Identical group No.223679 (1 seq.)
>SRA1049113
SRR035095.22716
454 Sequencing (SRP001816)
230
147
-
Leu
TAG
[SRA]
Identical group No.229561 (4 seq.)
>WENV170563562
CZCB01021523
[CZCB] anaerobic digester metagenome; anaerobic digester
522
440
-
Leu
TAG
[ENA]
¢þ
>SRA1050261
SRR035095.223735
454 Sequencing (SRP001816)
140
58
-
Leu
TAG
[SRA]
>SRA1050517
SRR035095.281001
454 Sequencing (SRP001816)
140
58
-
Leu
TAG
[SRA]
>SRA1050610
SRR035095.304716
454 Sequencing (SRP001816)
140
58
-
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK