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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = TAT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256305 (1 seq.)
>SRA1049204
SRR035095.37750
454 Sequencing (SRP001816)
102
178
+
Ile
TAT
[SRA]
Identical group No.256308 (1 seq.)
>SRA1049307
SRR035095.54461
454 Sequencing (SRP001816)
22
97
+
Ile
TAT
[SRA]
Identical group No.256317 (1 seq.)
>SRA1049807
SRR035095.141233
454 Sequencing (SRP001816)
208
285
+
Ile
TAT
[SRA]
Identical group No.300694 (7 seq.)
>WENV170621637
FUWD013066765
[FUWD] metagenome; unknown
1659
1735
+
Ile
TAT
[ENA]
¢þ
>WENV170629826
FUWD013282718
[FUWD] metagenome; unknown
1659
1735
+
Ile
TAT
[ENA]
¢þ
>SRA1019155
SRR035082.410558
454 Sequencing (SRP001803)
67
143
+
Ile
TAT
[SRA]
>SRA1031529
SRR035087.444937
454 Sequencing (SRP001808)
287
211
-
Ile
TAT
[SRA]
>SRA1032513
SRR035088.34449
454 Sequencing (SRP001809)
251
175
-
Ile
TAT
[SRA]
>SRA1041942
SRR035091.317149
454 Sequencing (SRP001812)
252
176
-
Ile
TAT
[SRA]
>SRA1050136
SRR035095.198102
454 Sequencing (SRP001816)
287
363
+
Ile
TAT
[SRA]
Identical group No.372232 (1 seq.)
>SRA1050573
SRR035095.295509
454 Sequencing (SRP001816)
165
241
+
Ile
TAT
[SRA]
Identical group No.453453 (8 seq.)
>WENV170620733
FUWD013037905
[FUWD] metagenome; unknown
627
552
-
Ile
TAT
[ENA]
¢þ
>WENV170628876
FUWD013255122
[FUWD] metagenome; unknown
627
552
-
Ile
TAT
[ENA]
¢þ
>SRA1026825
SRR035085.304180
454 Sequencing (SRP001806)
116
41
-
Ile
TAT
[SRA]
>SRA1041059
SRR035091.189447
454 Sequencing (SRP001812)
363
438
+
Ile
TAT
[SRA]
>SRA1042303
SRR035091.369630
454 Sequencing (SRP001812)
160
85
-
Ile
TAT
[SRA]
>SRA1042807
SRR035091.449880
454 Sequencing (SRP001812)
361
436
+
Ile
TAT
[SRA]
>SRA1043900
SRR035092.191899
454 Sequencing (SRP001813)
500
425
-
Ile
TAT
[SRA]
>SRA1050262
SRR035095.224059
454 Sequencing (SRP001816)
138
63
-
Ile
TAT
[SRA]
Identical group No.547637 (3 seq.)
>WENV170602323
FUWD010226390
[FUWD] metagenome; unknown
790
717
-
Ile
TAT
[ENA]
¢þ
>SRA1033380
SRR035088.240575
454 Sequencing (SRP001809)
111
38
-
Ile
TAT
[SRA]
>SRA1049408
SRR035095.72601
454 Sequencing (SRP001816)
315
242
-
Ile
TAT
[SRA]
Identical group No.563065 (3 seq.)
>W131193255
ASNW01000003
Unclassified
Parcubacteria bacterium SCGC AB-164-E21 OD1 bacterium SCGC AB-164-E21 [ASNW]
17861
17934
+
Ile
TAT
[ENA]
¡û
>SRA1041222
SRR035091.215834
454 Sequencing (SRP001812)
88
15
-
Ile
TAT
[SRA]
>SRA1049208
SRR035095.38318
454 Sequencing (SRP001816)
197
270
+
Ile
TAT
[SRA]
Identical group No.563119 (1 seq.)
>SRA1050005
SRR035095.175368
454 Sequencing (SRP001816)
33
106
+
Ile
TAT
[SRA]
Identical group No.720458 (1 seq.)
>SRA1050450
SRR035095.266433
454 Sequencing (SRP001816)
433
359
-
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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