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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = TCA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.597 (7 seq.)
>WENV170616113
FUWD012877926
[FUWD] metagenome; unknown
88
185
+
SeC(p)
TCA
[ENA]
¢þ
>SRA1036283
SRR035089.487651
454 Sequencing (SRP001810)
84
181
+
SeC
TCA
[SRA]
>SRA1048139
SRR035094.114980
454 Sequencing (SRP001815)
97
194
+
SeC
TCA
[SRA]
>SRA1049344
SRR035095.60930
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
>SRA1049614
SRR035095.104829
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
>SRA1049765
SRR035095.136111
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
>SRA1050017
SRR035095.177400
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
Identical group No.712 (2 seq.)
>SRA1030024
SRR035087.218062
454 Sequencing (SRP001808)
324
421
+
SeC
TCA
[SRA]
>SRA1050105
SRR035095.192758
454 Sequencing (SRP001816)
368
271
-
SeC
TCA
[SRA]
Identical group No.940 (6 seq.)
>WENV170693652
LGVC01035926
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
408
505
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170695526
LGVE01113699
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1369
1272
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170697321
LGVF01112680
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2280
2183
-
SeC(p)
TCA
[ENA]
¢þ
>SRA1033447
SRR035088.259726
454 Sequencing (SRP001809)
200
297
+
SeC
TCA
[SRA]
>SRA1033682
SRR035088.322288
454 Sequencing (SRP001809)
101
4
-
SeC
TCA
[SRA]
>SRA1049554
SRR035095.95245
454 Sequencing (SRP001816)
420
323
-
SeC
TCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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