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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = TCG
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272449 (23 seq.)
>WENV181413199
OGCK01038251
[OGCK] hot springs metagenome; hot spring sediment
853
929
+
Arg
TCG
[ENA]
¢þ
>WENV170616588
FUWD012892690
[FUWD] metagenome; unknown
15
91
+
Arg
TCG
[ENA]
¢þ
>WENV170617548
FUWD012929501
[FUWD] metagenome; unknown
109
185
+
Arg
TCG
[ENA]
¢þ
>WENV170620355
FUWD013030264
[FUWD] metagenome; unknown
1996
1920
-
Arg
TCG
[ENA]
¢þ
>WENV170624202
FUWD013177659
[FUWD] metagenome; unknown
348
272
-
Arg
TCG
[ENA]
¢þ
>WENV170625247
FUWD013194035
[FUWD] metagenome; unknown
2626
2702
+
Arg
TCG
[ENA]
¢þ
>WENV170628492
FUWD013247842
[FUWD] metagenome; unknown
1996
1920
-
Arg
TCG
[ENA]
¢þ
>WENV170632485
FUWD013383366
[FUWD] metagenome; unknown
348
272
-
Arg
TCG
[ENA]
¢þ
>WENV170633492
FUWD013396979
[FUWD] metagenome; unknown
2626
2702
+
Arg
TCG
[ENA]
¢þ
>SRA1017972
SRR035082.223176
454 Sequencing (SRP001803)
380
304
-
Arg
TCG
[SRA]
>SRA1018286
SRR035082.269545
454 Sequencing (SRP001803)
15
91
+
Arg
TCG
[SRA]
>SRA1018874
SRR035082.361764
454 Sequencing (SRP001803)
241
165
-
Arg
TCG
[SRA]
>SRA1026645
SRR035085.248989
454 Sequencing (SRP001806)
237
161
-
Arg
TCG
[SRA]
>SRA1029242
SRR035087.96635
454 Sequencing (SRP001808)
294
370
+
Arg
TCG
[SRA]
>SRA1029647
SRR035087.156066
454 Sequencing (SRP001808)
139
63
-
Arg
TCG
[SRA]
>SRA1029823
SRR035087.187552
454 Sequencing (SRP001808)
310
234
-
Arg
TCG
[SRA]
>SRA1034567
SRR035089.124575
454 Sequencing (SRP001810)
148
72
-
Arg
TCG
[SRA]
>SRA1034574
SRR035089.126691
454 Sequencing (SRP001810)
274
350
+
Arg
TCG
[SRA]
>SRA1035940
SRR035089.409818
454 Sequencing (SRP001810)
142
66
-
Arg
TCG
[SRA]
>SRA1048204
SRR035094.128844
454 Sequencing (SRP001815)
243
319
+
Arg
TCG
[SRA]
>SRA1049069
SRR035095.14204
454 Sequencing (SRP001816)
147
223
+
Arg
TCG
[SRA]
>SRA1049559
SRR035095.95725
454 Sequencing (SRP001816)
119
195
+
Arg
TCG
[SRA]
>SRA1050302
SRR035095.234322
454 Sequencing (SRP001816)
377
453
+
Arg
TCG
[SRA]
Identical group No.272562 (3 seq.)
>WENV170602345
FUWD010229253
[FUWD] metagenome; unknown
574
498
-
Arg
TCG
[ENA]
¢þ
>SRA1034476
SRR035089.105248
454 Sequencing (SRP001810)
205
129
-
Arg
TCG
[SRA]
>SRA1049335
SRR035095.58642
454 Sequencing (SRP001816)
78
154
+
Arg
TCG
[SRA]
Identical group No.272655 (6 seq.)
>W1711581743
MNUN01000140
Unclassified
Deltaproteobacteria bacterium CG1_02_45_11 [MNUN]
14112
14188
+
Arg
TCG
[ENA]
¡û
>WENV170603403
FUWD010307867
[FUWD] metagenome; unknown
156
232
+
Arg
TCG
[ENA]
¢þ
>SRA1034942
SRR035089.204274
454 Sequencing (SRP001810)
58
134
+
Arg
TCG
[SRA]
>SRA1049130
SRR035095.25870
454 Sequencing (SRP001816)
75
151
+
Arg
TCG
[SRA]
>SRA1049770
SRR035095.136678
454 Sequencing (SRP001816)
98
22
-
Arg
TCG
[SRA]
>SRA1050374
SRR035095.247242
454 Sequencing (SRP001816)
328
252
-
Arg
TCG
[SRA]
Identical group No.272728 (15 seq.)
>W131235311
AULM01000003
Thermodesulfobacteriota
Desulfatiglans anilini DSM 4660 [AULM]
154296
154372
+
Arg
TCG
[ENA]
¡û
>WENV180345965
OBLN01015377
[OBLN] sediment metagenome; sediment
613
689
+
Arg
TCG
[ENA]
¢þ
>WENV183515301
OMKS01056163
[OMKS] sediment metagenome; hot spring sediment
731
805
+
Arg
TCG
[ENA]
¢þ
>WENV183667469
ORJL010651111
[ORJL] groundwater metagenome; groundwater
677
601
-
Arg
TCG
[ENA]
¢þ
>WENV170625366
FUWD013196638
[FUWD] metagenome; unknown
1842
1766
-
Arg
TCG
[ENA]
¢þ
>WENV170625368
FUWD013196639
[FUWD] metagenome; unknown
145
69
-
Arg
TCG
[ENA]
¢þ
>WENV170633606
FUWD013399285
[FUWD] metagenome; unknown
1842
1766
-
Arg
TCG
[ENA]
¢þ
>WENV170633608
FUWD013399286
[FUWD] metagenome; unknown
145
69
-
Arg
TCG
[ENA]
¢þ
>SRA1031726
SRR035087.477717
454 Sequencing (SRP001808)
276
352
+
Arg
TCG
[SRA]
>SRA1033495
SRR035088.271988
454 Sequencing (SRP001809)
399
323
-
Arg
TCG
[SRA]
>SRA1033594
SRR035088.296744
454 Sequencing (SRP001809)
136
60
-
Arg
TCG
[SRA]
>SRA1034136
SRR035088.504591
454 Sequencing (SRP001809)
200
124
-
Arg
TCG
[SRA]
>SRA1035369
SRR035089.292193
454 Sequencing (SRP001810)
228
304
+
Arg
TCG
[SRA]
>SRA1049929
SRR035095.162444
454 Sequencing (SRP001816)
490
414
-
Arg
TCG
[SRA]
>SRA1050237
SRR035095.218579
454 Sequencing (SRP001816)
154
230
+
Arg
TCG
[SRA]
Identical group No.272772 (8 seq.)
>WENV170608061
FUWD010888068
[FUWD] metagenome; unknown
282
358
+
Arg
TCG
[ENA]
¢þ
>SRA1032461
SRR035088.17532
454 Sequencing (SRP001809)
220
144
-
Arg
TCG
[SRA]
>SRA1032952
SRR035088.138779
454 Sequencing (SRP001809)
221
145
-
Arg
TCG
[SRA]
>SRA1033393
SRR035088.244278
454 Sequencing (SRP001809)
128
52
-
Arg
TCG
[SRA]
>SRA1035642
SRR035089.347394
454 Sequencing (SRP001810)
15
91
+
Arg
TCG
[SRA]
>SRA1035919
SRR035089.403774
454 Sequencing (SRP001810)
306
382
+
Arg
TCG
[SRA]
>SRA1048332
SRR035094.149221
454 Sequencing (SRP001815)
292
216
-
Arg
TCG
[SRA]
>SRA1049794
SRR035095.139692
454 Sequencing (SRP001816)
432
356
-
Arg
TCG
[SRA]
Identical group No.301083 (7 seq.)
>W1710790883
LJNC01000047
Unclassified
Latescibacteria bacterium DG_63 [LJNC]
3648
3724
+
Arg
TCG
[ENA]
¡û
>W1710799132
LJUI01000138
Unclassified
candidate division TA06 bacterium SM23_40 [LJUI]
4512
4436
-
Arg
TCG
[ENA]
¡û
>W1710799743
LJVA01000187
Unclassified
candidate division TA06 bacterium SM1_40 [LJVA]
986
1062
+
Arg
TCG
[ENA]
¡û
>SRA1049837
SRR035095.145298
454 Sequencing (SRP001816)
245
169
-
Arg
TCG
[SRA]
>W1610654808
LJNC01000047
Unclassified
Latescibacteria bacterium DG_63 [LJNC]
3648
3724
+
Arg
TCG
[ENA]
¡û
>W1610663089
LJUI01000138
Unclassified
candidate division TA06 bacterium SM23_40 [LJUI]
4512
4436
-
Arg
TCG
[ENA]
¡û
>W1610663700
LJVA01000187
Unclassified
candidate division TA06 bacterium SM1_40 [LJVA]
986
1062
+
Arg
TCG
[ENA]
¡û
Identical group No.321229 (10 seq.)
>WENV170620212
FUWD013027450
[FUWD] metagenome; unknown
7278
7202
-
Arg
TCG
[ENA]
¢þ
>WENV170628348
FUWD013245228
[FUWD] metagenome; unknown
7278
7202
-
Arg
TCG
[ENA]
¢þ
>SRA1032630
SRR035088.66998
454 Sequencing (SRP001809)
192
116
-
Arg
TCG
[SRA]
>SRA1033579
SRR035088.293243
454 Sequencing (SRP001809)
183
107
-
Arg
TCG
[SRA]
>SRA1040507
SRR035091.107240
454 Sequencing (SRP001812)
307
383
+
Arg
TCG
[SRA]
>SRA1040583
SRR035091.118691
454 Sequencing (SRP001812)
28
104
+
Arg
TCG
[SRA]
>SRA1040670
SRR035091.130488
454 Sequencing (SRP001812)
253
177
-
Arg
TCG
[SRA]
>SRA1041637
SRR035091.272435
454 Sequencing (SRP001812)
219
143
-
Arg
TCG
[SRA]
>SRA1050365
SRR035095.244956
454 Sequencing (SRP001816)
99
175
+
Arg
TCG
[SRA]
>SRA1054808
SRR035099.218877
454 Sequencing (SRP001820)
493
417
-
Arg
TCG
[SRA]
Identical group No.323279 (2 seq.)
>WENV170920594
MDTF01018971
[MDTF] marine metagenome; seawater
7008
7084
+
Arg
TCG
[ENA]
¢þ
>SRA1050066
SRR035095.186179
454 Sequencing (SRP001816)
124
48
-
Arg
TCG
[SRA]
Identical group No.358008 (4 seq.)
>WENV170608228
FUWD010904775
[FUWD] metagenome; unknown
237
311
+
Arg
TCG
[ENA]
¢þ
>SRA1049668
SRR035095.113907
454 Sequencing (SRP001816)
247
321
+
Arg
TCG
[SRA]
>SRA1049761
SRR035095.135692
454 Sequencing (SRP001816)
387
461
+
Arg
TCG
[SRA]
>SRA1050148
SRR035095.200623
454 Sequencing (SRP001816)
416
342
-
Arg
TCG
[SRA]
Identical group No.358398 (3 seq.)
>WENV170612787
FUWD012688063
[FUWD] metagenome; unknown
68
144
+
Arg
TCG
[ENA]
¢þ
>SRA1049240
SRR035095.42854
454 Sequencing (SRP001816)
78
154
+
Arg
TCG
[SRA]
>SRA1050045
SRR035095.180623
454 Sequencing (SRP001816)
173
97
-
Arg
TCG
[SRA]
Identical group No.358400 (3 seq.)
>WENV170612790
FUWD012688969
[FUWD] metagenome; unknown
262
337
+
Arg
TCG
[ENA]
¢þ
>SRA1049318
SRR035095.55995
454 Sequencing (SRP001816)
272
347
+
Arg
TCG
[SRA]
>SRA1050051
SRR035095.183018
454 Sequencing (SRP001816)
274
349
+
Arg
TCG
[SRA]
Identical group No.358405 (3 seq.)
>WENV170612822
FUWD012696747
[FUWD] metagenome; unknown
102
176
+
Arg
TCG
[ENA]
¢þ
>SRA1042353
SRR035091.376037
454 Sequencing (SRP001812)
284
358
+
Arg
TCG
[SRA]
>SRA1049984
SRR035095.171778
454 Sequencing (SRP001816)
112
186
+
Arg
TCG
[SRA]
Identical group No.358914 (5 seq.)
>WENV170625997
FUWD013211219
[FUWD] metagenome; unknown
1268
1342
+
Arg
TCG
[ENA]
¢þ
>WENV170631942
FUWD013372929
[FUWD] metagenome; unknown
5257
5183
-
Arg
TCG
[ENA]
¢þ
>SRA1033857
SRR035088.379903
454 Sequencing (SRP001809)
256
330
+
Arg
TCG
[SRA]
>SRA1042267
SRR035091.364676
454 Sequencing (SRP001812)
229
303
+
Arg
TCG
[SRA]
>SRA1049381
SRR035095.67188
454 Sequencing (SRP001816)
208
134
-
Arg
TCG
[SRA]
Identical group No.372140 (2 seq.)
>SRA1042409
SRR035091.383620
454 Sequencing (SRP001812)
208
283
+
Arg
TCG
[SRA]
>SRA1049328
SRR035095.57531
454 Sequencing (SRP001816)
201
276
+
Arg
TCG
[SRA]
Identical group No.372141 (1 seq.)
>SRA1049338
SRR035095.59609
454 Sequencing (SRP001816)
561
485
-
Arg
TCG
[SRA]
Identical group No.372155 (1 seq.)
>SRA1049510
SRR035095.87911
454 Sequencing (SRP001816)
529
451
-
Arg
TCG
[SRA]
Identical group No.372166 (1 seq.)
>SRA1049604
SRR035095.103522
454 Sequencing (SRP001816)
258
183
-
Arg
TCG
[SRA]
Identical group No.372175 (1 seq.)
>SRA1049742
SRR035095.131064
454 Sequencing (SRP001816)
481
405
-
Arg
TCG
[SRA]
Identical group No.372195 (1 seq.)
>SRA1050026
SRR035095.178313
454 Sequencing (SRP001816)
476
400
-
Arg
TCG
[SRA]
Identical group No.372204 (2 seq.)
>SRA1050115
SRR035095.195009
454 Sequencing (SRP001816)
185
109
-
Arg
TCG
[SRA]
>SRA1050272
SRR035095.227011
454 Sequencing (SRP001816)
185
109
-
Arg
TCG
[SRA]
Identical group No.372208 (1 seq.)
>SRA1050212
SRR035095.213474
454 Sequencing (SRP001816)
179
255
+
Arg
TCG
[SRA]
Identical group No.372230 (1 seq.)
>SRA1050567
SRR035095.294787
454 Sequencing (SRP001816)
310
237
-
Arg
TCG
[SRA]
Identical group No.548466 (2 seq.)
>WENV170613100
FUWD012780133
[FUWD] metagenome; unknown
672
747
+
Arg
TCG
[ENA]
¢þ
>SRA1049896
SRR035095.156078
454 Sequencing (SRP001816)
305
380
+
Arg
TCG
[SRA]
Identical group No.563108 (1 seq.)
>SRA1049859
SRR035095.148606
454 Sequencing (SRP001816)
152
227
+
Arg
TCG
[SRA]
Identical group No.563124 (1 seq.)
>SRA1050120
SRR035095.195165
454 Sequencing (SRP001816)
131
58
-
Arg
TCG
[SRA]
Identical group No.563145 (2 seq.)
>SRA1050471
SRR035095.269704
454 Sequencing (SRP001816)
276
202
-
Arg
TCG
[SRA]
>SRA1050501
SRR035095.277621
454 Sequencing (SRP001816)
275
201
-
Arg
TCG
[SRA]
Identical group No.563148 (2 seq.)
>SRA1042421
SRR035091.384902
454 Sequencing (SRP001812)
309
234
-
Arg
TCG
[SRA]
>SRA1050508
SRR035095.278784
454 Sequencing (SRP001816)
313
238
-
Arg
TCG
[SRA]
Identical group No.563152 (1 seq.)
>SRA1050595
SRR035095.298126
454 Sequencing (SRP001816)
454
381
-
Arg
TCG
[SRA]
Identical group No.654666 (14 seq.)
>WENV170598273
FUWD010030793
[FUWD] metagenome; unknown
425
352
-
Arg
TCG
[ENA]
¢þ
>WENV170627254
FUWD013232414
[FUWD] metagenome; unknown
16614
16687
+
Arg
TCG
[ENA]
¢þ
>SRA1029857
SRR035087.192877
454 Sequencing (SRP001808)
414
341
-
Arg
TCG
[SRA]
>SRA1035435
SRR035089.303245
454 Sequencing (SRP001810)
239
166
-
Arg
TCG
[SRA]
>SRA1040090
SRR035091.37284
454 Sequencing (SRP001812)
166
93
-
Arg
TCG
[SRA]
>SRA1041338
SRR035091.229546
454 Sequencing (SRP001812)
207
134
-
Arg
TCG
[SRA]
>SRA1042052
SRR035091.332692
454 Sequencing (SRP001812)
282
209
-
Arg
TCG
[SRA]
>SRA1047898
SRR035094.63993
454 Sequencing (SRP001815)
154
81
-
Arg
TCG
[SRA]
>SRA1048596
SRR035094.205672
454 Sequencing (SRP001815)
128
55
-
Arg
TCG
[SRA]
>SRA1049487
SRR035095.85304
454 Sequencing (SRP001816)
129
202
+
Arg
TCG
[SRA]
>SRA1049506
SRR035095.87814
454 Sequencing (SRP001816)
31
104
+
Arg
TCG
[SRA]
>SRA1049682
SRR035095.118550
454 Sequencing (SRP001816)
253
180
-
Arg
TCG
[SRA]
>SRA1049927
SRR035095.162111
454 Sequencing (SRP001816)
122
49
-
Arg
TCG
[SRA]
>SRA1050179
SRR035095.206778
454 Sequencing (SRP001816)
252
325
+
Arg
TCG
[SRA]
Identical group No.720418 (1 seq.)
>SRA1049626
SRR035095.106754
454 Sequencing (SRP001816)
132
203
+
Arg
TCG
[SRA]
Identical group No.720452 (3 seq.)
>WENV180039716
LLBY010136142
[LLBY] soil metagenome; soil from tomato rhizosphere
225
297
+
Arg
TCG
[ENA]
¢þ
>WENV180041716
LLBZ010336835
[LLBZ] soil metagenome; soil from tomato rhizosphere
2238
2166
-
Arg
TCG
[ENA]
¢þ
>SRA1050389
SRR035095.250793
454 Sequencing (SRP001816)
309
235
-
Arg
TCG
[SRA]
Identical group No.805235 (2 seq.)
>WENV170611650
FUWD012366136
[FUWD] metagenome; unknown
359
432
+
Arg
TCG
[ENA]
¢þ
>SRA1049438
SRR035095.77872
454 Sequencing (SRP001816)
215
288
+
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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