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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = TTT
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256325 (1 seq.)
>SRA1050126
SRR035095.195779
454 Sequencing (SRP001816)
179
256
+
Lys
TTT
[SRA]
Identical group No.272326 (3 seq.)
>WENV170607843
FUWD010860421
[FUWD] metagenome; unknown
191
267
+
Lys
TTT
[ENA]
¢þ
>SRA1025903
SRR035085.105782
454 Sequencing (SRP001806)
210
286
+
Lys
TTT
[SRA]
>SRA1050545
SRR035095.288861
454 Sequencing (SRP001816)
189
113
-
Lys
TTT
[SRA]
Identical group No.272827 (6 seq.)
>WENV170626886
FUWD013229963
[FUWD] metagenome; unknown
6620
6544
-
Lys
TTT
[ENA]
¢þ
>SRA1036000
SRR035089.424675
454 Sequencing (SRP001810)
375
299
-
Lys
TTT
[SRA]
>SRA1040651
SRR035091.127607
454 Sequencing (SRP001812)
169
245
+
Lys
TTT
[SRA]
>SRA1042658
SRR035091.425368
454 Sequencing (SRP001812)
98
22
-
Lys
TTT
[SRA]
>SRA1049472
SRR035095.82693
454 Sequencing (SRP001816)
152
228
+
Lys
TTT
[SRA]
>SRA1050371
SRR035095.246138
454 Sequencing (SRP001816)
324
400
+
Lys
TTT
[SRA]
Identical group No.272845 (5 seq.)
>WENV170623283
FUWD013144372
[FUWD] metagenome; unknown
588
665
+
Lys
TTT
[ENA]
¢þ
>WENV170631542
FUWD013356390
[FUWD] metagenome; unknown
588
665
+
Lys
TTT
[ENA]
¢þ
>SRA1036147
SRR035089.455449
454 Sequencing (SRP001810)
91
168
+
Lys
TTT
[SRA]
>SRA1049366
SRR035095.64885
454 Sequencing (SRP001816)
86
163
+
Lys
TTT
[SRA]
>SRA1050510
SRR035095.279647
454 Sequencing (SRP001816)
249
172
-
Lys
TTT
[SRA]
Identical group No.272894 (8 seq.)
>WENV170600299
FUWD010118958
[FUWD] metagenome; unknown
62
138
+
Lys
TTT
[ENA]
¢þ
>WENV170620675
FUWD013036448
[FUWD] metagenome; unknown
744
668
-
Lys
TTT
[ENA]
¢þ
>WENV170628820
FUWD013253717
[FUWD] metagenome; unknown
744
668
-
Lys
TTT
[ENA]
¢þ
>SRA1032146
SRR035087.563301
454 Sequencing (SRP001808)
149
225
+
Lys
TTT
[SRA]
>SRA1032699
SRR035088.81569
454 Sequencing (SRP001809)
284
360
+
Lys
TTT
[SRA]
>SRA1033731
SRR035088.339037
454 Sequencing (SRP001809)
375
450
+
Lys
TTT
[SRA]
>SRA1036393
SRR035089.509828
454 Sequencing (SRP001810)
202
278
+
Lys
TTT
[SRA]
>SRA1049822
SRR035095.143012
454 Sequencing (SRP001816)
158
234
+
Lys
TTT
[SRA]
Identical group No.300465 (6 seq.)
>WENV170618322
FUWD012962662
[FUWD] metagenome; unknown
553
477
-
Lys
TTT
[ENA]
¢þ
>WENV170626025
FUWD013212316
[FUWD] metagenome; unknown
258
182
-
Lys
TTT
[ENA]
¢þ
>SRA1030168
SRR035087.237449
454 Sequencing (SRP001808)
193
117
-
Lys
TTT
[SRA]
>SRA1032960
SRR035088.140886
454 Sequencing (SRP001809)
107
31
-
Lys
TTT
[SRA]
>SRA1034132
SRR035088.503129
454 Sequencing (SRP001809)
138
62
-
Lys
TTT
[SRA]
>SRA1050222
SRR035095.214638
454 Sequencing (SRP001816)
123
199
+
Lys
TTT
[SRA]
Identical group No.300520 (9 seq.)
>WENV170622516
FUWD013107606
[FUWD] metagenome; unknown
940
1016
+
Lys
TTT
[ENA]
¢þ
>WENV170630741
FUWD013321923
[FUWD] metagenome; unknown
940
1016
+
Lys
TTT
[ENA]
¢þ
>SRA1019519
SRR035082.470468
454 Sequencing (SRP001803)
233
307
+
Lys
TTT
[SRA]
>SRA1030449
SRR035087.280756
454 Sequencing (SRP001808)
100
24
-
Lys
TTT
[SRA]
>SRA1041757
SRR035091.288473
454 Sequencing (SRP001812)
35
111
+
Lys
TTT
[SRA]
>SRA1041840
SRR035091.303504
454 Sequencing (SRP001812)
230
156
-
Lys
TTT
[SRA]
>SRA1049049
SRR035095.6943
454 Sequencing (SRP001816)
264
188
-
Lys
TTT
[SRA]
>SRA1049061
SRR035095.12804
454 Sequencing (SRP001816)
265
189
-
Lys
TTT
[SRA]
>SRA1049932
SRR035095.162529
454 Sequencing (SRP001816)
266
190
-
Lys
TTT
[SRA]
Identical group No.357523 (7 seq.)
>WENV170598839
FUWD010051030
[FUWD] metagenome; unknown
108
33
-
Lys
TTT
[ENA]
¢þ
>WENV170624528
FUWD013182687
[FUWD] metagenome; unknown
179
104
-
Lys
TTT
[ENA]
¢þ
>WENV170632814
FUWD013387402
[FUWD] metagenome; unknown
179
104
-
Lys
TTT
[ENA]
¢þ
>SRA1040426
SRR035091.95882
454 Sequencing (SRP001812)
90
165
+
Lys
TTT
[SRA]
>SRA1042428
SRR035091.385690
454 Sequencing (SRP001812)
108
33
-
Lys
TTT
[SRA]
>SRA1043819
SRR035092.180089
454 Sequencing (SRP001813)
186
111
-
Lys
TTT
[SRA]
>SRA1049050
SRR035095.7343
454 Sequencing (SRP001816)
145
220
+
Lys
TTT
[SRA]
Identical group No.358286 (8 seq.)
>W1711403751
MFWV01000001
Unclassified
Candidatus Pacebacteria bacterium RIFOXYA1_FULL_38_18 [MFWV]
38411
38487
+
Lys
TTT
[ENA]
¡û
>W1711403794
MFWW01000002
Unclassified
Candidatus Pacebacteria bacterium RIFOXYB1_FULL_39_46 [MFWW]
37580
37656
+
Lys
TTT
[ENA]
¡û
>W1711403868
MFWY01000003
Unclassified
Candidatus Pacebacteria bacterium RIFOXYC1_FULL_39_21 [MFWY]
37785
37861
+
Lys
TTT
[ENA]
¡û
>W1711403903
MFWZ01000001
Unclassified
Candidatus Pacebacteria bacterium RIFOXYD1_FULL_39_27 [MFWZ]
37564
37640
+
Lys
TTT
[ENA]
¡û
>WENV170611637
FUWD012364001
[FUWD] metagenome; unknown
168
244
+
Lys
TTT
[ENA]
¢þ
>SRA1018840
SRR035082.355395
454 Sequencing (SRP001803)
171
247
+
Lys
TTT
[SRA]
>SRA1049403
SRR035095.71843
454 Sequencing (SRP001816)
93
169
+
Lys
TTT
[SRA]
>WENV069109
AACY023753516
Marine microbial communities from Global Ocean Sampling (GOS)
636
714
+
Lys
TTT
[ENA]
Identical group No.372150 (1 seq.)
>SRA1049476
SRR035095.82976
454 Sequencing (SRP001816)
375
299
-
Lys
TTT
[SRA]
Identical group No.372199 (1 seq.)
>SRA1050065
SRR035095.185431
454 Sequencing (SRP001816)
264
339
+
Lys
TTT
[SRA]
Identical group No.372203 (1 seq.)
>SRA1050113
SRR035095.194894
454 Sequencing (SRP001816)
187
112
-
Lys
TTT
[SRA]
Identical group No.372207 (1 seq.)
>SRA1050211
SRR035095.213080
454 Sequencing (SRP001816)
269
342
+
Lys
TTT
[SRA]
Identical group No.453642 (4 seq.)
>WENV170601726
FUWD010190444
[FUWD] metagenome; unknown
669
594
-
Lys
TTT
[ENA]
¢þ
>SRA1035147
SRR035089.246214
454 Sequencing (SRP001810)
426
351
-
Lys
TTT
[SRA]
>SRA1049523
SRR035095.90082
454 Sequencing (SRP001816)
153
228
+
Lys
TTT
[SRA]
>SRA1049744
SRR035095.131764
454 Sequencing (SRP001816)
247
322
+
Lys
TTT
[SRA]
Identical group No.453666 (11 seq.)
>WENV170621002
FUWD013045630
[FUWD] metagenome; unknown
296
371
+
Lys
TTT
[ENA]
¢þ
>WENV170629159
FUWD013262525
[FUWD] metagenome; unknown
296
371
+
Lys
TTT
[ENA]
¢þ
>SRA1019360
SRR035082.441958
454 Sequencing (SRP001803)
266
341
+
Lys
TTT
[SRA]
>SRA1035279
SRR035089.274142
454 Sequencing (SRP001810)
320
395
+
Lys
TTT
[SRA]
>SRA1040609
SRR035091.122403
454 Sequencing (SRP001812)
307
232
-
Lys
TTT
[SRA]
>SRA1041196
SRR035091.212361
454 Sequencing (SRP001812)
398
323
-
Lys
TTT
[SRA]
>SRA1042463
SRR035091.390753
454 Sequencing (SRP001812)
92
167
+
Lys
TTT
[SRA]
>SRA1042632
SRR035091.419678
454 Sequencing (SRP001812)
225
150
-
Lys
TTT
[SRA]
>SRA1044364
SRR035092.266317
454 Sequencing (SRP001813)
470
395
-
Lys
TTT
[SRA]
>SRA1049453
SRR035095.80167
454 Sequencing (SRP001816)
309
234
-
Lys
TTT
[SRA]
>SRA1050391
SRR035095.250939
454 Sequencing (SRP001816)
378
303
-
Lys
TTT
[SRA]
Identical group No.453745 (4 seq.)
>WENV170621638
FUWD013066782
[FUWD] metagenome; unknown
212
137
-
Lys
TTT
[ENA]
¢þ
>WENV170629828
FUWD013282731
[FUWD] metagenome; unknown
212
137
-
Lys
TTT
[ENA]
¢þ
>SRA1035699
SRR035089.356677
454 Sequencing (SRP001810)
436
361
-
Lys
TTT
[SRA]
>SRA1049643
SRR035095.110017
454 Sequencing (SRP001816)
96
172
+
Lys
TTT
[SRA]
Identical group No.484502 (4 seq.)
>WENV170612118
FUWD012506833
[FUWD] metagenome; unknown
240
166
-
Lys
TTT
[ENA]
¢þ
>SRA1031882
SRR035087.503650
454 Sequencing (SRP001808)
240
166
-
Lys
TTT
[SRA]
>SRA1031998
SRR035087.528579
454 Sequencing (SRP001808)
294
220
-
Lys
TTT
[SRA]
>SRA1050669
SRR035095.319699
454 Sequencing (SRP001816)
225
151
-
Lys
TTT
[SRA]
Identical group No.507001 (19 seq.)
>W131110492
APJX01000001
Thermodesulfobacteriota
Desulfotignum phosphitoxidans DSM 13687 [APJX]
275055
274980
-
Lys
TTT
[ENA]
¡û
>W131169740
AREY01000035
Thermodesulfobacteriota
Desulfobacter curvatus DSM 3379 [AREY]
51366
51441
+
Lys
TTT
[ENA]
¡û
>W131217244
ATWO01000001
Thermodesulfobacteriota
Desulfotignum balticum DSM 7044 [ATWO]
852878
852953
+
Lys
TTT
[ENA]
¡û
>WENV180043707
LQAI01009191
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
738
813
+
Lys
TTT
[ENA]
¢þ
>WENV180317183
OBKJ01044691
[OBKJ] metagenome; hydrothermal vent
89
164
+
Lys
TTT
[ENA]
¢þ
>WENV181207951
OFBA01004366
[OFBA] metagenome; hydrothermal vent
164
239
+
Lys
TTT
[ENA]
¢þ
>WENV181208378
OFBB01006742
[OFBB] metagenome; hydrothermal vent
758
833
+
Lys
TTT
[ENA]
¢þ
>WENV181208800
OFBC01007980
[OFBC] metagenome; hydrothermal vent
338
413
+
Lys
TTT
[ENA]
¢þ
>WENV181224877
OFDG01012519
[OFDG] metagenome; hydrothermal vent
343
416
+
Lys
TTT
[ENA]
¢þ
>WENV181225594
OFDI01011336
[OFDI] metagenome; hydrothermal vent
497
422
-
Lys
TTT
[ENA]
¢þ
>WENV183708618
PDWI01018076
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1601
1526
-
Lys
TTT
[ENA]
¢þ
>WENV183718366
PDWJ01003586
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
47551
47626
+
Lys
TTT
[ENA]
¢þ
>WENV170605236
FUWD010461043
[FUWD] metagenome; unknown
143
218
+
Lys
TTT
[ENA]
¢þ
>WENV170646965
JQIA01006891
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
5756
5829
+
Lys
TTT
[ENA]
¢þ
>W141817091
JQKJ01000014
Thermodesulfobacteriota
Desulfobacter vibrioformis DSM 8776 [JQKJ]
634
559
-
Lys
TTT
[ENA]
¡û
>W1810695170
QLNI01000001
Thermodesulfobacteriota
Desulfobacter hydrogenophilus DSM 3380 [QLNI]
135175
135250
+
Lys
TTT
[ENA]
¡û
>SRA1049180
SRR035095.33724
454 Sequencing (SRP001816)
142
67
-
Lys
TTT
[SRA]
>SRA1054135
SRR035099.66900
454 Sequencing (SRP001820)
158
233
+
Lys
TTT
[SRA]
>SRA1054786
SRR035099.213544
454 Sequencing (SRP001820)
332
257
-
Lys
TTT
[SRA]
Identical group No.519867 (11 seq.)
>WENV183802560
PVBE010768971
[PVBE] marine metagenome; water
830
757
-
Lys
TTT
[ENA]
¢þ
>WENV170384451
CETX01303462
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1207
1280
+
Lys
TTT
[ENA]
¢þ
>WENV170398941
CEUD01327117
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
858
931
+
Lys
TTT
[ENA]
¢þ
>WENV170621011
FUWD013045923
[FUWD] metagenome; unknown
461
534
+
Lys
TTT
[ENA]
¢þ
>WENV170629171
FUWD013262790
[FUWD] metagenome; unknown
461
534
+
Lys
TTT
[ENA]
¢þ
>SRA1032685
SRR035088.79460
454 Sequencing (SRP001809)
292
219
-
Lys
TTT
[SRA]
>SRA1034041
SRR035088.463266
454 Sequencing (SRP001809)
259
332
+
Lys
TTT
[SRA]
>SRA1037755
SRR035090.189188
454 Sequencing (SRP001811)
219
146
-
Lys
TTT
[SRA]
>SRA1039254
SRR035090.453069
454 Sequencing (SRP001811)
264
191
-
Lys
TTT
[SRA]
>SRA1039537
SRR035090.511152
454 Sequencing (SRP001811)
264
191
-
Lys
TTT
[SRA]
>SRA1050533
SRR035095.284694
454 Sequencing (SRP001816)
102
29
-
Lys
TTT
[SRA]
Identical group No.522578 (2 seq.)
>WENV170570535
FLOH01000009
[FLOH] marine metagenome; water
555690
555615
-
Lys
TTT
[ENA]
¢þ
>SRA1049985
SRR035095.171943
454 Sequencing (SRP001816)
272
347
+
Lys
TTT
[SRA]
Identical group No.547978 (2 seq.)
>WENV170607844
FUWD010860541
[FUWD] metagenome; unknown
35
110
+
Lys
TTT
[ENA]
¢þ
>SRA1050612
SRR035095.305881
454 Sequencing (SRP001816)
182
107
-
Lys
TTT
[SRA]
Identical group No.548314 (3 seq.)
>WENV170611756
FUWD012389079
[FUWD] metagenome; unknown
100
175
+
Lys
TTT
[ENA]
¢þ
>SRA1022136
SRR035083.357602
454 Sequencing (SRP001804)
138
213
+
Lys
TTT
[SRA]
>SRA1049412
SRR035095.73904
454 Sequencing (SRP001816)
111
186
+
Lys
TTT
[SRA]
Identical group No.548430 (4 seq.)
>WENV170612837
FUWD012700027
[FUWD] metagenome; unknown
235
310
+
Lys
TTT
[ENA]
¢þ
>SRA1019391
SRR035082.448570
454 Sequencing (SRP001803)
76
151
+
Lys
TTT
[SRA]
>SRA1047999
SRR035094.84957
454 Sequencing (SRP001815)
86
11
-
Lys
TTT
[SRA]
>SRA1050315
SRR035095.235732
454 Sequencing (SRP001816)
259
334
+
Lys
TTT
[SRA]
Identical group No.563057 (1 seq.)
>SRA1049101
SRR035095.19636
454 Sequencing (SRP001816)
312
237
-
Lys
TTT
[SRA]
Identical group No.563069 (1 seq.)
>SRA1049264
SRR035095.47634
454 Sequencing (SRP001816)
537
462
-
Lys
TTT
[SRA]
Identical group No.563071 (3 seq.)
>SRA1049283
SRR035095.49850
454 Sequencing (SRP001816)
102
177
+
Lys
TTT
[SRA]
>SRA1049650
SRR035095.111346
454 Sequencing (SRP001816)
102
177
+
Lys
TTT
[SRA]
>SRA1049716
SRR035095.124307
454 Sequencing (SRP001816)
102
177
+
Lys
TTT
[SRA]
Identical group No.563081 (1 seq.)
>SRA1049471
SRR035095.82661
454 Sequencing (SRP001816)
7
82
+
Lys
TTT
[SRA]
Identical group No.563126 (1 seq.)
>SRA1050130
SRR035095.196898
454 Sequencing (SRP001816)
39
112
+
Lys
TTT
[SRA]
Identical group No.711129 (2 seq.)
>WENV170612795
FUWD012691106
[FUWD] metagenome; unknown
311
239
-
Lys
TTT
[ENA]
¢þ
>SRA1049495
SRR035095.86524
454 Sequencing (SRP001816)
320
248
-
Lys
TTT
[SRA]
Identical group No.805448 (15 seq.)
>WENV170622865
FUWD013124413
[FUWD] metagenome; unknown
1588
1661
+
Lys
TTT
[ENA]
¢þ
>WENV170624357
FUWD013180374
[FUWD] metagenome; unknown
8287
8360
+
Lys
TTT
[ENA]
¢þ
>WENV170627823
FUWD013237777
[FUWD] metagenome; unknown
11473
11546
+
Lys
TTT
[ENA]
¢þ
>WENV170631084
FUWD013337946
[FUWD] metagenome; unknown
1588
1661
+
Lys
TTT
[ENA]
¢þ
>SRA1017421
SRR035082.136504
454 Sequencing (SRP001803)
83
10
-
Lys
TTT
[SRA]
>SRA1033243
SRR035088.204515
454 Sequencing (SRP001809)
132
59
-
Lys
TTT
[SRA]
>SRA1040082
SRR035091.34537
454 Sequencing (SRP001812)
202
129
-
Lys
TTT
[SRA]
>SRA1040294
SRR035091.73472
454 Sequencing (SRP001812)
81
8
-
Lys
TTT
[SRA]
>SRA1040649
SRR035091.127285
454 Sequencing (SRP001812)
279
352
+
Lys
TTT
[SRA]
>SRA1041005
SRR035091.180668
454 Sequencing (SRP001812)
48
121
+
Lys
TTT
[SRA]
>SRA1041521
SRR035091.255238
454 Sequencing (SRP001812)
236
163
-
Lys
TTT
[SRA]
>SRA1041735
SRR035091.284316
454 Sequencing (SRP001812)
11
84
+
Lys
TTT
[SRA]
>SRA1042824
SRR035091.451197
454 Sequencing (SRP001812)
294
221
-
Lys
TTT
[SRA]
>SRA1045087
SRR035092.407544
454 Sequencing (SRP001813)
178
251
+
Lys
TTT
[SRA]
>SRA1050437
SRR035095.262629
454 Sequencing (SRP001816)
269
196
-
Lys
TTT
[SRA]
Identical group No.809590 (1 seq.)
>SRA1049898
SRR035095.156424
454 Sequencing (SRP001816)
386
459
+
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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