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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = AAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.547491 (31 seq.)
>WENV170599034
FUWD010059584
[FUWD] metagenome; unknown
443
518
+
Val
AAC
[ENA]
¢þ
>WENV170617017
FUWD012911676
[FUWD] metagenome; unknown
544
472
-
Val
AAC
[ENA]
¢þ
>WENV170617023
FUWD012911677
[FUWD] metagenome; unknown
138
66
-
Val
AAC
[ENA]
¢þ
>WENV170617232
FUWD012918842
[FUWD] metagenome; unknown
386
461
+
Val
AAC
[ENA]
¢þ
>WENV170617237
FUWD012918843
[FUWD] metagenome; unknown
30
102
+
Val
AAC
[ENA]
¢þ
>SRA1026878
SRR035086.18754
454 Sequencing (SRP001807)
211
139
-
Val
AAC
[SRA]
>SRA1026892
SRR035086.21545
454 Sequencing (SRP001807)
148
73
-
Val
AAC
[SRA]
>SRA1026945
SRR035086.31202
454 Sequencing (SRP001807)
422
494
+
Val
AAC
[SRA]
>SRA1026952
SRR035086.32367
454 Sequencing (SRP001807)
180
108
-
Val
AAC
[SRA]
>SRA1026997
SRR035086.39968
454 Sequencing (SRP001807)
139
211
+
Val
AAC
[SRA]
>SRA1027006
SRR035086.43397
454 Sequencing (SRP001807)
278
203
-
Val
AAC
[SRA]
>SRA1027206
SRR035086.82073
454 Sequencing (SRP001807)
316
388
+
Val
AAC
[SRA]
>SRA1027348
SRR035086.110604
454 Sequencing (SRP001807)
455
527
+
Val
AAC
[SRA]
>SRA1027374
SRR035086.114438
454 Sequencing (SRP001807)
235
307
+
Val
AAC
[SRA]
>SRA1027549
SRR035086.146155
454 Sequencing (SRP001807)
195
270
+
Val
AAC
[SRA]
>SRA1027579
SRR035086.151271
454 Sequencing (SRP001807)
172
244
+
Val
AAC
[SRA]
>SRA1027615
SRR035086.160741
454 Sequencing (SRP001807)
96
24
-
Val
AAC
[SRA]
>SRA1027891
SRR035086.213296
454 Sequencing (SRP001807)
128
56
-
Val
AAC
[SRA]
>SRA1028056
SRR035086.248324
454 Sequencing (SRP001807)
248
320
+
Val
AAC
[SRA]
>SRA1028074
SRR035086.253100
454 Sequencing (SRP001807)
394
466
+
Val
AAC
[SRA]
>SRA1028136
SRR035086.266358
454 Sequencing (SRP001807)
51
126
+
Val
AAC
[SRA]
>SRA1028147
SRR035086.267153
454 Sequencing (SRP001807)
248
320
+
Val
AAC
[SRA]
>SRA1028329
SRR035086.300757
454 Sequencing (SRP001807)
427
352
-
Val
AAC
[SRA]
>SRA1028368
SRR035086.310236
454 Sequencing (SRP001807)
220
292
+
Val
AAC
[SRA]
>SRA1028574
SRR035086.362893
454 Sequencing (SRP001807)
209
137
-
Val
AAC
[SRA]
>SRA1028628
SRR035086.378197
454 Sequencing (SRP001807)
75
150
+
Val
AAC
[SRA]
>SRA1050733
SRR035096.7005
454 Sequencing (SRP001817)
217
145
-
Val
AAC
[SRA]
>SRA1050799
SRR035096.22181
454 Sequencing (SRP001817)
281
356
+
Val
AAC
[SRA]
>SRA1050976
SRR035096.64368
454 Sequencing (SRP001817)
156
231
+
Val
AAC
[SRA]
>SRA1051049
SRR035096.75463
454 Sequencing (SRP001817)
211
283
+
Val
AAC
[SRA]
>SRA1051403
SRR035096.167469
454 Sequencing (SRP001817)
77
149
+
Val
AAC
[SRA]
Identical group No.620477 (1 seq.)
>SRA1051314
SRR035096.135635
454 Sequencing (SRP001817)
57
132
+
Val
AAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK