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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = AAT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291439 (96 seq.)
>WENV180051027
MPLU02183995
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
2326
2402
+
Ile
AAT
[ENA]
¢þ
>WENV180100977
OAOT01029594
[OAOT] marine metagenome; Mesotrophic water
169
93
-
Ile
AAT
[ENA]
¢þ
>WENV180109846
OAPL01002274
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
328
253
-
Ile
AAT
[ENA]
¢þ
>WENV180112687
OAPP01071912
[OAPP] marine metagenome; Surface water
149
73
-
Ile
AAT
[ENA]
¢þ
>WENV180214635
OBAP01025701
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
222
147
-
Ile
AAT
[ENA]
¢þ
>WENV180362660
OBNX01015673
[OBNX] marine metagenome; ENVO:00002010
270
195
-
Ile
AAT
[ENA]
¢þ
>WENV180367449
OBOE01094560
[OBOE] marine metagenome; ENVO:00002010
71
145
+
Ile
AAT
[ENA]
¢þ
>WENV180377790
OBON01123095
[OBON] marine metagenome; sea water
246
173
-
Ile
AAT
[ENA]
¢þ
>WENV180379991
OBOP01254166
[OBOP] marine metagenome; water
2
78
+
Ile
AAT
[ENA]
¢þ
>WENV180387506
OBPF01003885
[OBPF] marine metagenome; Sterile flask
531
606
+
Ile
AAT
[ENA]
¢þ
>WENV180388630
OBPH01040530
[OBPH] marine metagenome; Sterile flask
148
73
-
Ile
AAT
[ENA]
¢þ
>WENV180586921
OCON01008368
[OCON] marine metagenome; seawater
549
473
-
Ile
AAT
[ENA]
¢þ
>WENV180650284
OCSY01003337
[OCSY] marine metagenome; 30 L Plastic container
415
490
+
Ile
AAT
[ENA]
¢þ
>WENV182540908
OJAQ01000284
[OJAQ] seawater metagenome; Sea water
333
258
-
Ile
AAT
[ENA]
¢þ
>WENV182542165
OJAV01006639
[OJAV] seawater metagenome; Sea water
750
825
+
Ile
AAT
[ENA]
¢þ
>WENV182544289
OJBF01002369
[OJBF] seawater metagenome; Sea water
1284
1359
+
Ile
AAT
[ENA]
¢þ
>WENV182550019
OJBZ01001752
[OJBZ] seawater metagenome; Sea water
1679
1754
+
Ile
AAT
[ENA]
¢þ
>WENV182556495
OJDG01012363
[OJDG] seawater metagenome; Sea water
918
993
+
Ile
AAT
[ENA]
¢þ
>WENV182557170
OJDI01001781
[OJDI] seawater metagenome; Sea water
1875
1950
+
Ile
AAT
[ENA]
¢þ
>WENV182558518
OJDM01009609
[OJDM] seawater metagenome; Sea water
333
258
-
Ile
AAT
[ENA]
¢þ
>WENV182561689
OJDX01000682
[OJDX] seawater metagenome; Sea water
3923
3998
+
Ile
AAT
[ENA]
¢þ
>WENV182561990
OJDY01000567
[OJDY] seawater metagenome; Sea water
3737
3662
-
Ile
AAT
[ENA]
¢þ
>WENV182563237
OJEB01002785
[OJEB] seawater metagenome; Sea water
1124
1049
-
Ile
AAT
[ENA]
¢þ
>WENV182563566
OJEC01003379
[OJEC] seawater metagenome; Sea water
1123
1048
-
Ile
AAT
[ENA]
¢þ
>WENV182564159
OJEE01000330
[OJEE] seawater metagenome; Sea water
8227
8302
+
Ile
AAT
[ENA]
¢þ
>WENV182566385
OJEL01000125
[OJEL] seawater metagenome; Sea water
1322
1398
+
Ile
AAT
[ENA]
¢þ
>WENV182569129
OJEY01000949
[OJEY] seawater metagenome; Sea water
787
862
+
Ile
AAT
[ENA]
¢þ
>WENV182569822
OJFB01000737
[OJFB] seawater metagenome; Sea water
7595
7670
+
Ile
AAT
[ENA]
¢þ
>WENV182573861
OJFQ01000554
[OJFQ] seawater metagenome; Sea water
1796
1871
+
Ile
AAT
[ENA]
¢þ
>WENV182575837
OJFW01005515
[OJFW] seawater metagenome; Sea water
683
608
-
Ile
AAT
[ENA]
¢þ
>WENV182576619
OJFY01000573
[OJFY] seawater metagenome; Sea water
1227
1302
+
Ile
AAT
[ENA]
¢þ
>WENV182582171
OJHA01000399
[OJHA] seawater metagenome; Sea water
2035
1960
-
Ile
AAT
[ENA]
¢þ
>WENV182582652
OJHB01006874
[OJHB] seawater metagenome; Sea water
352
277
-
Ile
AAT
[ENA]
¢þ
>WENV182583228
OJHD01001277
[OJHD] seawater metagenome; Sea water
3735
3660
-
Ile
AAT
[ENA]
¢þ
>WENV182587705
OJHN01002121
[OJHN] seawater metagenome; Sea water
962
1037
+
Ile
AAT
[ENA]
¢þ
>WENV182589587
OJID01018697
[OJID] seawater metagenome; Sea water
181
106
-
Ile
AAT
[ENA]
¢þ
>WENV182590176
OJIH01002147
[OJIH] seawater metagenome; Sea water
1080
1005
-
Ile
AAT
[ENA]
¢þ
>WENV183053875
OLGR01000618
[OLGR] seawater metagenome; Sea water
2183
2107
-
Ile
AAT
[ENA]
¢þ
>WENV183054651
OLGU01000912
[OLGU] seawater metagenome; Sea water
5768
5843
+
Ile
AAT
[ENA]
¢þ
>WENV183059019
OLHS01001075
[OLHS] seawater metagenome; Sea water
1095
1020
-
Ile
AAT
[ENA]
¢þ
>WENV183059938
OLHW01000608
[OLHW] seawater metagenome; Sea water
1942
1866
-
Ile
AAT
[ENA]
¢þ
>WENV183060295
OLHX01001512
[OLHX] seawater metagenome; Sea water
1230
1305
+
Ile
AAT
[ENA]
¢þ
>WENV170424668
CEUP01002885
[CEUP] marine metagenome genome assembly TARA_123_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
110
186
+
Ile
AAT
[ENA]
¢þ
>WENV170608709
FUWD011054157
[FUWD] metagenome; unknown
280
205
-
Ile
AAT
[ENA]
¢þ
>WENV170616990
FUWD012911669
[FUWD] metagenome; unknown
292
367
+
Ile
AAT
[ENA]
¢þ
>WENV170616994
FUWD012911670
[FUWD] metagenome; unknown
27
102
+
Ile
AAT
[ENA]
¢þ
>WENV170617028
FUWD012911683
[FUWD] metagenome; unknown
982
1057
+
Ile
AAT
[ENA]
¢þ
>WENV170617432
FUWD012926217
[FUWD] metagenome; unknown
374
299
-
Ile
AAT
[ENA]
¢þ
>WENV170696286
LGVF01009723
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
362
437
+
Ile
AAT
[ENA]
¢þ
>SRA1026863
SRR035086.14494
454 Sequencing (SRP001807)
231
156
-
Ile
AAT
[SRA]
>SRA1026915
SRR035086.28415
454 Sequencing (SRP001807)
110
185
+
Ile
AAT
[SRA]
>SRA1026944
SRR035086.31165
454 Sequencing (SRP001807)
230
155
-
Ile
AAT
[SRA]
>SRA1026961
SRR035086.34575
454 Sequencing (SRP001807)
223
298
+
Ile
AAT
[SRA]
>SRA1026967
SRR035086.35652
454 Sequencing (SRP001807)
365
440
+
Ile
AAT
[SRA]
>SRA1027021
SRR035086.44986
454 Sequencing (SRP001807)
402
327
-
Ile
AAT
[SRA]
>SRA1027131
SRR035086.68253
454 Sequencing (SRP001807)
115
40
-
Ile
AAT
[SRA]
>SRA1027162
SRR035086.72910
454 Sequencing (SRP001807)
87
162
+
Ile
AAT
[SRA]
>SRA1027166
SRR035086.73061
454 Sequencing (SRP001807)
320
245
-
Ile
AAT
[SRA]
>SRA1027196
SRR035086.78177
454 Sequencing (SRP001807)
377
302
-
Ile
AAT
[SRA]
>SRA1027275
SRR035086.94125
454 Sequencing (SRP001807)
128
53
-
Ile
AAT
[SRA]
>SRA1027351
SRR035086.110614
454 Sequencing (SRP001807)
103
178
+
Ile
AAT
[SRA]
>SRA1027372
SRR035086.114280
454 Sequencing (SRP001807)
335
410
+
Ile
AAT
[SRA]
>SRA1027382
SRR035086.116090
454 Sequencing (SRP001807)
225
300
+
Ile
AAT
[SRA]
>SRA1027441
SRR035086.125805
454 Sequencing (SRP001807)
19
94
+
Ile
AAT
[SRA]
>SRA1027444
SRR035086.125937
454 Sequencing (SRP001807)
97
172
+
Ile
AAT
[SRA]
>SRA1027532
SRR035086.143320
454 Sequencing (SRP001807)
286
361
+
Ile
AAT
[SRA]
>SRA1027596
SRR035086.155079
454 Sequencing (SRP001807)
154
79
-
Ile
AAT
[SRA]
>SRA1027651
SRR035086.166321
454 Sequencing (SRP001807)
228
153
-
Ile
AAT
[SRA]
>SRA1027776
SRR035086.190752
454 Sequencing (SRP001807)
28
103
+
Ile
AAT
[SRA]
>SRA1027846
SRR035086.206263
454 Sequencing (SRP001807)
207
132
-
Ile
AAT
[SRA]
>SRA1027863
SRR035086.209308
454 Sequencing (SRP001807)
292
367
+
Ile
AAT
[SRA]
>SRA1027880
SRR035086.211999
454 Sequencing (SRP001807)
198
273
+
Ile
AAT
[SRA]
>SRA1027915
SRR035086.217866
454 Sequencing (SRP001807)
415
340
-
Ile
AAT
[SRA]
>SRA1027947
SRR035086.224281
454 Sequencing (SRP001807)
410
335
-
Ile
AAT
[SRA]
>SRA1028023
SRR035086.239393
454 Sequencing (SRP001807)
492
417
-
Ile
AAT
[SRA]
>SRA1028076
SRR035086.253599
454 Sequencing (SRP001807)
132
57
-
Ile
AAT
[SRA]
>SRA1028125
SRR035086.264013
454 Sequencing (SRP001807)
301
376
+
Ile
AAT
[SRA]
>SRA1028144
SRR035086.266917
454 Sequencing (SRP001807)
397
322
-
Ile
AAT
[SRA]
>SRA1028157
SRR035086.268144
454 Sequencing (SRP001807)
401
326
-
Ile
AAT
[SRA]
>SRA1028230
SRR035086.279926
454 Sequencing (SRP001807)
220
295
+
Ile
AAT
[SRA]
>SRA1028358
SRR035086.308034
454 Sequencing (SRP001807)
359
434
+
Ile
AAT
[SRA]
>SRA1028387
SRR035086.314292
454 Sequencing (SRP001807)
512
437
-
Ile
AAT
[SRA]
>SRA1028434
SRR035086.324815
454 Sequencing (SRP001807)
425
500
+
Ile
AAT
[SRA]
>SRA1028460
SRR035086.331827
454 Sequencing (SRP001807)
103
178
+
Ile
AAT
[SRA]
>SRA1028501
SRR035086.340780
454 Sequencing (SRP001807)
280
205
-
Ile
AAT
[SRA]
>SRA1028596
SRR035086.368530
454 Sequencing (SRP001807)
342
267
-
Ile
AAT
[SRA]
>SRA1028613
SRR035086.375337
454 Sequencing (SRP001807)
273
198
-
Ile
AAT
[SRA]
>SRA1028701
SRR035086.403642
454 Sequencing (SRP001807)
416
341
-
Ile
AAT
[SRA]
>SRA1028710
SRR035086.406099
454 Sequencing (SRP001807)
110
35
-
Ile
AAT
[SRA]
>SRA1050790
SRR035096.20840
454 Sequencing (SRP001817)
291
216
-
Ile
AAT
[SRA]
>SRA1050804
SRR035096.22562
454 Sequencing (SRP001817)
388
313
-
Ile
AAT
[SRA]
>SRA1050811
SRR035096.24215
454 Sequencing (SRP001817)
107
182
+
Ile
AAT
[SRA]
>SRA1050864
SRR035096.36692
454 Sequencing (SRP001817)
180
105
-
Ile
AAT
[SRA]
>SRA1051119
SRR035096.89828
454 Sequencing (SRP001817)
97
22
-
Ile
AAT
[SRA]
>SRA1051142
SRR035096.94617
454 Sequencing (SRP001817)
107
182
+
Ile
AAT
[SRA]
>SRA1051176
SRR035096.101524
454 Sequencing (SRP001817)
424
349
-
Ile
AAT
[SRA]
Identical group No.422551 (2 seq.)
>SRA1050730
SRR035096.6380
454 Sequencing (SRP001817)
83
10
-
Ile
AAT
[SRA]
>SRA1050767
SRR035096.18581
454 Sequencing (SRP001817)
83
10
-
Ile
AAT
[SRA]
Identical group No.422562 (1 seq.)
>SRA1051251
SRR035096.120069
454 Sequencing (SRP001817)
180
105
-
Ile
AAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK