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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = ACT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49640 (7 seq.)
>WENV170626976
FUWD013230590
[FUWD] metagenome; unknown
8006
7919
-
Ser
ACT
[ENA]
¢þ
>WENV170629311
FUWD013266799
[FUWD] metagenome; unknown
28667
28580
-
Ser
ACT
[ENA]
¢þ
>SRA1023193
SRR035084.33180
454 Sequencing (SRP001805)
225
138
-
Ser
ACT
[SRA]
>SRA1024346
SRR035084.304965
454 Sequencing (SRP001805)
137
224
+
Ser
ACT
[SRA]
>SRA1046853
SRR035093.399289
454 Sequencing (SRP001814)
133
46
-
Ser
ACT
[SRA]
>SRA1047211
SRR035093.483190
454 Sequencing (SRP001814)
176
263
+
Ser
ACT
[SRA]
>SRA1051034
SRR035096.73629
454 Sequencing (SRP001817)
110
23
-
Ser
ACT
[SRA]
Identical group No.49642 (5 seq.)
>WENV170620400
FUWD013031027
[FUWD] metagenome; unknown
4152
4241
+
Ser
ACT
[ENA]
¢þ
>WENV170628538
FUWD013248565
[FUWD] metagenome; unknown
4152
4241
+
Ser
ACT
[ENA]
¢þ
>SRA1027339
SRR035086.108661
454 Sequencing (SRP001807)
137
50
-
Ser
ACT
[SRA]
>SRA1047008
SRR035093.434889
454 Sequencing (SRP001814)
92
3
-
Ser
ACT
[SRA]
>SRA1050974
SRR035096.63840
454 Sequencing (SRP001817)
280
191
-
Ser
ACT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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