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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = CAA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118401 (4 seq.)
>WENV170627343
FUWD013232623
[FUWD] metagenome; unknown
80654
80568
-
Leu
CAA
[ENA]
¢þ
>SRA1024379
SRR035084.310925
454 Sequencing (SRP001805)
121
207
+
Leu
CAA
[SRA]
>SRA1045858
SRR035093.182555
454 Sequencing (SRP001814)
43
129
+
Leu
CAA
[SRA]
>SRA1050947
SRR035096.56911
454 Sequencing (SRP001817)
180
94
-
Leu
CAA
[SRA]
Identical group No.157554 (9 seq.)
>WENV170619805
FUWD013021624
[FUWD] metagenome; unknown
2008
1923
-
Leu
CAA
[ENA]
¢þ
>WENV170627925
FUWD013239836
[FUWD] metagenome; unknown
2008
1923
-
Leu
CAA
[ENA]
¢þ
>SRA1027746
SRR035086.185025
454 Sequencing (SRP001807)
285
370
+
Leu
CAA
[SRA]
>SRA1028423
SRR035086.322711
454 Sequencing (SRP001807)
285
370
+
Leu
CAA
[SRA]
>SRA1046453
SRR035093.310479
454 Sequencing (SRP001814)
172
87
-
Leu
CAA
[SRA]
>SRA1047070
SRR035093.448744
454 Sequencing (SRP001814)
157
242
+
Leu
CAA
[SRA]
>SRA1050784
SRR035096.20132
454 Sequencing (SRP001817)
418
503
+
Leu
CAA
[SRA]
>SRA1051795
SRR035098.78347
454 Sequencing (SRP001819)
93
178
+
Leu
CAA
[SRA]
>SRA1053018
SRR035098.318760
454 Sequencing (SRP001819)
93
178
+
Leu
CAA
[SRA]
Identical group No.175390 (1 seq.)
>SRA1051238
SRR035096.116006
454 Sequencing (SRP001817)
438
354
-
Leu
CAA
[SRA]
Identical group No.184136 (6 seq.)
>WENV181392157
OFRW01005378
[OFRW] seawater metagenome; seawater
1182
1101
-
Leu
CAA
[ENA]
¢þ
>WENV182574490
OJFR01042266
[OJFR] seawater metagenome; Sea water
578
497
-
Leu
CAA
[ENA]
¢þ
>WENV182593033
OJIS01014801
[OJIS] seawater metagenome; Sea water
711
792
+
Leu
CAA
[ENA]
¢þ
>WENV183626868
OOGK01005578
[OOGK] marine metagenome; seawater
1182
1101
-
Leu
CAA
[ENA]
¢þ
>WENV170569729
FLMP01282746
[FLMP] seawater metagenome; seawater
97
15
-
Leu
CAA
[ENA]
¢þ
>SRA1051437
SRR035096.182620
454 Sequencing (SRP001817)
146
227
+
Leu
CAA
[SRA]
Identical group No.186127 (51 seq.)
>WENV170627077
FUWD013231189
[FUWD] metagenome; unknown
2262
2345
+
Leu
CAA
[ENA]
¢þ
>WENV170627080
FUWD013231190
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170627161
FUWD013231750
[FUWD] metagenome; unknown
6838
6755
-
Leu
CAA
[ENA]
¢þ
>WENV170627165
FUWD013231752
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170627168
FUWD013231754
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170627205
FUWD013232034
[FUWD] metagenome; unknown
7965
7882
-
Leu
CAA
[ENA]
¢þ
>WENV170627772
FUWD013237147
[FUWD] metagenome; unknown
2262
2345
+
Leu
CAA
[ENA]
¢þ
>WENV170627776
FUWD013237153
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170632148
FUWD013378851
[FUWD] metagenome; unknown
6838
6755
-
Leu
CAA
[ENA]
¢þ
>WENV170632152
FUWD013378861
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170632155
FUWD013378866
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170632688
FUWD013386175
[FUWD] metagenome; unknown
7965
7882
-
Leu
CAA
[ENA]
¢þ
>SRA1023104
SRR035084.3660
454 Sequencing (SRP001805)
399
482
+
Leu
CAA
[SRA]
>SRA1023248
SRR035084.50730
454 Sequencing (SRP001805)
393
310
-
Leu
CAA
[SRA]
>SRA1023727
SRR035084.161834
454 Sequencing (SRP001805)
93
10
-
Leu
CAA
[SRA]
>SRA1023747
SRR035084.164326
454 Sequencing (SRP001805)
195
278
+
Leu
CAA
[SRA]
>SRA1023903
SRR035084.204903
454 Sequencing (SRP001805)
288
205
-
Leu
CAA
[SRA]
>SRA1024084
SRR035084.247987
454 Sequencing (SRP001805)
300
217
-
Leu
CAA
[SRA]
>SRA1024150
SRR035084.261041
454 Sequencing (SRP001805)
222
139
-
Leu
CAA
[SRA]
>SRA1024754
SRR035084.394327
454 Sequencing (SRP001805)
195
278
+
Leu
CAA
[SRA]
>SRA1025374
SRR035084.568077
454 Sequencing (SRP001805)
157
74
-
Leu
CAA
[SRA]
>SRA1025388
SRR035084.576599
454 Sequencing (SRP001805)
393
310
-
Leu
CAA
[SRA]
>SRA1027089
SRR035086.62066
454 Sequencing (SRP001807)
324
241
-
Leu
CAA
[SRA]
>SRA1027222
SRR035086.85299
454 Sequencing (SRP001807)
25
108
+
Leu
CAA
[SRA]
>SRA1027296
SRR035086.99651
454 Sequencing (SRP001807)
134
51
-
Leu
CAA
[SRA]
>SRA1028621
SRR035086.377055
454 Sequencing (SRP001807)
283
366
+
Leu
CAA
[SRA]
>SRA1045153
SRR035093.9570
454 Sequencing (SRP001814)
122
205
+
Leu
CAA
[SRA]
>SRA1045614
SRR035093.134296
454 Sequencing (SRP001814)
121
204
+
Leu
CAA
[SRA]
>SRA1045799
SRR035093.172458
454 Sequencing (SRP001814)
402
319
-
Leu
CAA
[SRA]
>SRA1046739
SRR035093.374096
454 Sequencing (SRP001814)
313
230
-
Leu
CAA
[SRA]
>SRA1047042
SRR035093.440746
454 Sequencing (SRP001814)
214
131
-
Leu
CAA
[SRA]
>SRA1047557
SRR035093.580081
454 Sequencing (SRP001814)
3
86
+
Leu
CAA
[SRA]
>SRA1050904
SRR035096.48177
454 Sequencing (SRP001817)
188
105
-
Leu
CAA
[SRA]
>SRA1051041
SRR035096.74941
454 Sequencing (SRP001817)
377
294
-
Leu
CAA
[SRA]
>SRA1051104
SRR035096.86632
454 Sequencing (SRP001817)
238
321
+
Leu
CAA
[SRA]
>SRA1051252
SRR035096.120786
454 Sequencing (SRP001817)
425
342
-
Leu
CAA
[SRA]
>SRA1051272
SRR035096.127165
454 Sequencing (SRP001817)
52
135
+
Leu
CAA
[SRA]
>SRA1051287
SRR035096.130510
454 Sequencing (SRP001817)
100
183
+
Leu
CAA
[SRA]
>SRA1051339
SRR035096.145907
454 Sequencing (SRP001817)
254
337
+
Leu
CAA
[SRA]
>SRA1051459
SRR035098.5690
454 Sequencing (SRP001819)
119
202
+
Leu
CAA
[SRA]
>SRA1051655
SRR035098.50408
454 Sequencing (SRP001819)
204
287
+
Leu
CAA
[SRA]
>SRA1052098
SRR035098.140765
454 Sequencing (SRP001819)
138
221
+
Leu
CAA
[SRA]
>SRA1052148
SRR035098.150014
454 Sequencing (SRP001819)
354
271
-
Leu
CAA
[SRA]
>SRA1052693
SRR035098.254149
454 Sequencing (SRP001819)
175
92
-
Leu
CAA
[SRA]
>SRA1053216
SRR035098.363275
454 Sequencing (SRP001819)
48
131
+
Leu
CAA
[SRA]
>SRA1053382
SRR035098.395582
454 Sequencing (SRP001819)
353
270
-
Leu
CAA
[SRA]
>SRA1053394
SRR035098.397898
454 Sequencing (SRP001819)
1
84
+
Leu
CAA
[SRA]
>SRA1053627
SRR035098.456915
454 Sequencing (SRP001819)
95
178
+
Leu
CAA
[SRA]
>SRA1053631
SRR035098.457267
454 Sequencing (SRP001819)
94
177
+
Leu
CAA
[SRA]
>SRA1053862
SRR035098.519527
454 Sequencing (SRP001819)
234
151
-
Leu
CAA
[SRA]
>SRA1053915
SRR035098.535447
454 Sequencing (SRP001819)
241
158
-
Leu
CAA
[SRA]
Identical group No.222893 (5 seq.)
>WENV170622000
FUWD013083310
[FUWD] metagenome; unknown
1154
1237
+
Leu
CAA
[ENA]
¢þ
>WENV170630203
FUWD013298499
[FUWD] metagenome; unknown
1154
1237
+
Leu
CAA
[ENA]
¢þ
>SRA1048327
SRR035094.148184
454 Sequencing (SRP001815)
187
104
-
Leu
CAA
[SRA]
>SRA1048346
SRR035094.152394
454 Sequencing (SRP001815)
187
104
-
Leu
CAA
[SRA]
>SRA1050731
SRR035096.6397
454 Sequencing (SRP001817)
97
14
-
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK