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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = CCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.548913 (9 seq.)
>WENV170625164
FUWD013192960
[FUWD] metagenome; unknown
712
784
+
Arg
CCT
[ENA]
¢þ
>WENV170625165
FUWD013192960
[FUWD] metagenome; unknown
876
948
+
Arg
CCT
[ENA]
¢þ
>WENV170633420
FUWD013396058
[FUWD] metagenome; unknown
712
784
+
Arg
CCT
[ENA]
¢þ
>WENV170633421
FUWD013396058
[FUWD] metagenome; unknown
876
948
+
Arg
CCT
[ENA]
¢þ
>SRA1028313
SRR035086.298076
454 Sequencing (SRP001807)
194
122
-
Arg
CCT
[SRA]
>SRA1028650
SRR035086.387828
454 Sequencing (SRP001807)
165
93
-
Arg
CCT
[SRA]
>SRA1028714
SRR035086.407302
454 Sequencing (SRP001807)
229
301
+
Arg
CCT
[SRA]
>SRA1050871
SRR035096.38790
454 Sequencing (SRP001817)
100
28
-
Arg
CCT
[SRA]
>SRA1051166
SRR035096.100588
454 Sequencing (SRP001817)
216
288
+
Arg
CCT
[SRA]
Identical group No.711138 (3 seq.)
>WENV170612862
FUWD012710393
[FUWD] metagenome; unknown
107
35
-
Arg
CCT
[ENA]
¢þ
>SRA1051436
SRR035096.182078
454 Sequencing (SRP001817)
117
45
-
Arg
CCT
[SRA]
>SRA1052597
SRR035098.235209
454 Sequencing (SRP001819)
223
295
+
Arg
CCT
[SRA]
Identical group No.711305 (4 seq.)
>WENV170620513
FUWD013032988
[FUWD] metagenome; unknown
1018
1092
+
Arg
CCT
[ENA]
¢þ
>WENV170628656
FUWD013250438
[FUWD] metagenome; unknown
1018
1092
+
Arg
CCT
[ENA]
¢þ
>SRA1028117
SRR035086.262114
454 Sequencing (SRP001807)
417
491
+
Arg
CCT
[SRA]
>SRA1051022
SRR035096.70155
454 Sequencing (SRP001817)
342
416
+
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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