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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = CGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.54000 (18 seq.)
>WENV182547463
OJBS01007619
[OJBS] seawater metagenome; Sea water
164
75
-
Ser
CGA
[ENA]
¢þ
>WENV182551114
OJCB01023190
[OJCB] seawater metagenome; Sea water
220
309
+
Ser
CGA
[ENA]
¢þ
>WENV182553112
OJCR01000041
[OJCR] seawater metagenome; Sea water
46361
46450
+
Ser
CGA
[ENA]
¢þ
>WENV182565011
OJEF01027318
[OJEF] seawater metagenome; Sea water
377
466
+
Ser
CGA
[ENA]
¢þ
>WENV182567883
OJEP01001448
[OJEP] seawater metagenome; Sea water
1418
1329
-
Ser
CGA
[ENA]
¢þ
>WENV182572335
OJFL01003698
[OJFL] seawater metagenome; Sea water
2327
2416
+
Ser
CGA
[ENA]
¢þ
>WENV182573132
OJFP01000155
[OJFP] seawater metagenome; Sea water
18205
18116
-
Ser
CGA
[ENA]
¢þ
>WENV182579085
OJGS01000292
[OJGS] seawater metagenome; Sea water
15408
15319
-
Ser
CGA
[ENA]
¢þ
>WENV182580354
OJGW01000076
[OJGW] seawater metagenome; Sea water
24577
24666
+
Ser
CGA
[ENA]
¢þ
>WENV182584685
OJHG01005282
[OJHG] seawater metagenome; Sea water
2595
2506
-
Ser
CGA
[ENA]
¢þ
>WENV182586736
OJHK01003978
[OJHK] seawater metagenome; Sea water
942
1031
+
Ser
CGA
[ENA]
¢þ
>WENV183060634
OLHY01000918
[OLHY] seawater metagenome; Sea water
8040
8129
+
Ser
CGA
[ENA]
¢þ
>WENV170569979
FLMP01372822
[FLMP] seawater metagenome; seawater
266
177
-
Ser
CGA
[ENA]
¢þ
>WENV170605219
FUWD010459277
[FUWD] metagenome; unknown
253
164
-
Ser
CGA
[ENA]
¢þ
>WENV170950323
MEHZ011490812
[MEHZ] marine metagenome; marine surface water
1051
1140
+
Ser
CGA
[ENA]
¢þ
>SRA1050927
SRR035096.53101
454 Sequencing (SRP001817)
233
144
-
Ser
CGA
[SRA]
>SRA1051639
SRR035098.45130
454 Sequencing (SRP001819)
255
166
-
Ser
CGA
[SRA]
>SRA1052497
SRR035098.215124
454 Sequencing (SRP001819)
368
457
+
Ser
CGA
[SRA]
Identical group No.89123 (31 seq.)
>C171072604
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
714440
714356
-
Ser
CGA
-
¡û
>w013590
AANO01000009
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
103121
103210
+
Ser
CGA
[ENA]
¡û
>WENV180114750
OAPS01040874
[OAPS] marine metagenome; sea water
383
468
+
Ser
CGA
[ENA]
¢þ
>WENV180364025
OBNZ01054408
[OBNZ] marine metagenome; ENVO:00002010
296
381
+
Ser
CGA
[ENA]
¢þ
>WENV180377684
OBON01082177
[OBON] marine metagenome; sea water
14
99
+
Ser
CGA
[ENA]
¢þ
>WENV181377193
OFRA01003811
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1896
1812
-
Ser
CGA
[ENA]
¢þ
>WENV170604008
FUWD010352515
[FUWD] metagenome; unknown
472
557
+
Ser
CGA
[ENA]
¢þ
>WENV170606559
FUWD010684197
[FUWD] metagenome; unknown
101
15
-
Ser
CGA
[ENA]
¢þ
>WENV170614936
FUWD012844722
[FUWD] metagenome; unknown
2256
2172
-
Ser
CGA
[ENA]
¢þ
>W1911176882
NQKW01000010
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
2371
2285
-
Ser
CGA
[ENA]
¡û
>W1911176892
NQKX01000001
Cyanobacteriota
Synechococcus sp. MW101C3 [NQKX]
160461
160547
+
Ser
CGA
[ENA]
¡û
>W1911177003
NQKZ01000009
Cyanobacteriota
Synechococcus sp. 8F6 [NQKZ]
3455
3369
-
Ser
CGA
[ENA]
¡û
>W1810387037
PXVC01000074
Cyanobacteriota
Synechococcus lacustris Tous [PXVC]
7252
7168
-
Ser
CGA
[ENA]
¡û
>W1810389441
PXXO01000003
Cyanobacteriota
Cyanobium usitatum str. Tous [PXXO]
188917
189002
+
Ser
CGA
[ENA]
¡û
>SRA1027002
SRR035086.40675
454 Sequencing (SRP001807)
191
107
-
Ser
CGA
[SRA]
>SRA1027141
SRR035086.70850
454 Sequencing (SRP001807)
228
144
-
Ser
CGA
[SRA]
>SRA1027237
SRR035086.87935
454 Sequencing (SRP001807)
191
107
-
Ser
CGA
[SRA]
>SRA1027435
SRR035086.124615
454 Sequencing (SRP001807)
17
101
+
Ser
CGA
[SRA]
>SRA1027451
SRR035086.126676
454 Sequencing (SRP001807)
70
154
+
Ser
CGA
[SRA]
>SRA1027698
SRR035086.176274
454 Sequencing (SRP001807)
191
107
-
Ser
CGA
[SRA]
>SRA1028303
SRR035086.295447
454 Sequencing (SRP001807)
399
315
-
Ser
CGA
[SRA]
>SRA1032298
SRR035087.597873
454 Sequencing (SRP001808)
251
167
-
Ser
CGA
[SRA]
>SRA1051229
SRR035096.113123
454 Sequencing (SRP001817)
296
212
-
Ser
CGA
[SRA]
>SRA1051313
SRR035096.135363
454 Sequencing (SRP001817)
213
129
-
Ser
CGA
[SRA]
>SRA1051649
SRR035098.48402
454 Sequencing (SRP001819)
70
154
+
Ser
CGA
[SRA]
>SRA1051758
SRR035098.71335
454 Sequencing (SRP001819)
70
154
+
Ser
CGA
[SRA]
>SRA1052022
SRR035098.124849
454 Sequencing (SRP001819)
70
154
+
Ser
CGA
[SRA]
>SRA1052035
SRR035098.127603
454 Sequencing (SRP001819)
74
158
+
Ser
CGA
[SRA]
>SRA1052080
SRR035098.136528
454 Sequencing (SRP001819)
70
154
+
Ser
CGA
[SRA]
>W1610626668
LICO01000295
Cyanobacteriota
cyanobacterium BACL30 MAG-120619-bin27 [LICO]
1701
1786
+
Ser
CGA
[ENA]
¡û
>W1710757795
LICO01000295
Cyanobacteriota
cyanobacterium BACL30 MAG-120619-bin27 [LICO]
1701
1786
+
Ser
CGA
[ENA]
¡û
Identical group No.98591 (5 seq.)
>WENV170619815
FUWD013021624
[FUWD] metagenome; unknown
846
759
-
Ser
CGA
[ENA]
¢þ
>WENV170627935
FUWD013239836
[FUWD] metagenome; unknown
846
759
-
Ser
CGA
[ENA]
¢þ
>SRA1024681
SRR035084.374668
454 Sequencing (SRP001805)
205
118
-
Ser
CGA
[SRA]
>SRA1050996
SRR035096.67236
454 Sequencing (SRP001817)
301
388
+
Ser
CGA
[SRA]
>SRA1051642
SRR035098.45474
454 Sequencing (SRP001819)
103
190
+
Ser
CGA
[SRA]
Identical group No.206662 (2 seq.)
>SRA1027363
SRR035086.112759
454 Sequencing (SRP001807)
437
356
-
Ser
CGA
[SRA]
>SRA1051017
SRR035096.69958
454 Sequencing (SRP001817)
364
283
-
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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