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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = CGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.711251 (14 seq.)
>WENV170617456
FUWD012926983
[FUWD] metagenome; unknown
2558
2631
+
Ala
CGC
[ENA]
¢þ
>SRA1026842
SRR035086.7185
454 Sequencing (SRP001807)
308
381
+
Ala
CGC
[SRA]
>SRA1026907
SRR035086.25761
454 Sequencing (SRP001807)
236
163
-
Ala
CGC
[SRA]
>SRA1027099
SRR035086.62978
454 Sequencing (SRP001807)
155
228
+
Ala
CGC
[SRA]
>SRA1027197
SRR035086.79429
454 Sequencing (SRP001807)
78
151
+
Ala
CGC
[SRA]
>SRA1027354
SRR035086.111151
454 Sequencing (SRP001807)
28
101
+
Ala
CGC
[SRA]
>SRA1027480
SRR035086.131972
454 Sequencing (SRP001807)
346
273
-
Ala
CGC
[SRA]
>SRA1027496
SRR035086.135110
454 Sequencing (SRP001807)
116
43
-
Ala
CGC
[SRA]
>SRA1027886
SRR035086.212355
454 Sequencing (SRP001807)
138
211
+
Ala
CGC
[SRA]
>SRA1027961
SRR035086.228048
454 Sequencing (SRP001807)
327
400
+
Ala
CGC
[SRA]
>SRA1028659
SRR035086.390967
454 Sequencing (SRP001807)
56
129
+
Ala
CGC
[SRA]
>SRA1028762
SRR035086.427788
454 Sequencing (SRP001807)
176
103
-
Ala
CGC
[SRA]
>SRA1050898
SRR035096.45954
454 Sequencing (SRP001817)
46
119
+
Ala
CGC
[SRA]
>SRA1050932
SRR035096.54428
454 Sequencing (SRP001817)
52
125
+
Ala
CGC
[SRA]
Identical group No.756600 (1 seq.)
>SRA1050836
SRR035096.29713
454 Sequencing (SRP001817)
138
65
-
Ala
CGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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