This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = CGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.398865 (3 seq.)
>W1711361222
MDLA01000126
Gammaproteobacteria
Chromatiales bacterium (ex Bugula neritina AB1) [MDLA]
300373
300449
+
Pro
CGG
[ENA]
¡û
>SRA1027995
SRR035086.234114
454 Sequencing (SRP001807)
345
269
-
Pro
CGG
[SRA]
>SRA1051025
SRR035096.70615
454 Sequencing (SRP001817)
382
306
-
Pro
CGG
[SRA]
Identical group No.711252 (9 seq.)
>WENV170617459
FUWD012926983
[FUWD] metagenome; unknown
2748
2677
-
Pro
CGG
[ENA]
¢þ
>SRA1026959
SRR035086.34150
454 Sequencing (SRP001807)
289
360
+
Pro
CGG
[SRA]
>SRA1027304
SRR035086.102067
454 Sequencing (SRP001807)
212
283
+
Pro
CGG
[SRA]
>SRA1027355
SRR035086.111151
454 Sequencing (SRP001807)
218
147
-
Pro
CGG
[SRA]
>SRA1027356
SRR035086.111207
454 Sequencing (SRP001807)
282
353
+
Pro
CGG
[SRA]
>SRA1027535
SRR035086.143463
454 Sequencing (SRP001807)
212
283
+
Pro
CGG
[SRA]
>SRA1027622
SRR035086.162353
454 Sequencing (SRP001807)
508
437
-
Pro
CGG
[SRA]
>SRA1027887
SRR035086.212355
454 Sequencing (SRP001807)
328
257
-
Pro
CGG
[SRA]
>SRA1050933
SRR035096.54428
454 Sequencing (SRP001817)
242
171
-
Pro
CGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK