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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = GGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335192 (10 seq.)
>WENV001417
AACY020040567
Marine microbial communities from Global Ocean Sampling (GOS)
1357
1433
+
Pro
GGG
[ENA]
>WENV180102754
OAOZ01010572
[OAOZ] marine metagenome; ENVO:00002010
146
220
+
Pro
GGG
[ENA]
¢þ
>WENV180389438
OBPJ01017865
[OBPJ] marine metagenome; seawater
592
666
+
Pro
GGG
[ENA]
¢þ
>WENV183621713
OOFU01038096
[OOFU] marine metagenome; sea ice
362
288
-
Pro
GGG
[ENA]
¢þ
>WENV170568844
FLMP01086326
[FLMP] seawater metagenome; seawater
227
151
-
Pro
GGG
[ENA]
¢þ
>WENV170572252
FLOH01000659
[FLOH] marine metagenome; water
39782
39706
-
Pro
GGG
[ENA]
¢þ
>WENV170623640
FUWD013161722
[FUWD] metagenome; unknown
570
643
+
Pro
GGG
[ENA]
¢þ
>WENV170631918
FUWD013371013
[FUWD] metagenome; unknown
570
643
+
Pro
GGG
[ENA]
¢þ
>WENV170948815
MEHZ011286505
[MEHZ] marine metagenome; marine surface water
9762
9838
+
Pro
GGG
[ENA]
¢þ
>SRA1050753
SRR035096.15205
454 Sequencing (SRP001817)
118
42
-
Pro
GGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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