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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = TAA
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.79279 (3 seq.)
>WENV170621062
FUWD013047916
[FUWD] metagenome; unknown
1967
2053
+
Leu
TAA
[ENA]
¢þ
>WENV170629229
FUWD013264679
[FUWD] metagenome; unknown
1967
2053
+
Leu
TAA
[ENA]
¢þ
>SRA1050907
SRR035096.49041
454 Sequencing (SRP001817)
70
156
+
Leu
TAA
[SRA]
Identical group No.122810 (11 seq.)
>C171072591
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
2613642
2613559
-
Leu
TAA
-
¡û
>WENV170614416
FUWD012832889
[FUWD] metagenome; unknown
505
588
+
Leu
TAA
[ENA]
¢þ
>WENV170623830
FUWD013171531
[FUWD] metagenome; unknown
504
587
+
Leu
TAA
[ENA]
¢þ
>WENV170632114
FUWD013378434
[FUWD] metagenome; unknown
504
587
+
Leu
TAA
[ENA]
¢þ
>W1911176944
NQKY01000004
Cyanobacteriota
Synechococcus sp. BO 8801 [NQKY]
60156
60073
-
Leu
TAA
[ENA]
¡û
>SRA1027025
SRR035086.46301
454 Sequencing (SRP001807)
286
369
+
Leu
TAA
[SRA]
>SRA1051109
SRR035096.87613
454 Sequencing (SRP001817)
236
319
+
Leu
TAA
[SRA]
>SRA1051598
SRR035098.36426
454 Sequencing (SRP001819)
301
384
+
Leu
TAA
[SRA]
>SRA1052779
SRR035098.274002
454 Sequencing (SRP001819)
172
255
+
Leu
TAA
[SRA]
>SRA1052849
SRR035098.284931
454 Sequencing (SRP001819)
240
157
-
Leu
TAA
[SRA]
>SRA1053744
SRR035098.484441
454 Sequencing (SRP001819)
219
302
+
Leu
TAA
[SRA]
Identical group No.131720 (2 seq.)
>WENV170612857
FUWD012706523
[FUWD] metagenome; unknown
20
106
+
Leu
TAA
[ENA]
¢þ
>SRA1051008
SRR035096.69114
454 Sequencing (SRP001817)
30
116
+
Leu
TAA
[SRA]
Identical group No.131755 (12 seq.)
>WENV170617458
FUWD012926983
[FUWD] metagenome; unknown
3628
3545
-
Leu
TAA
[ENA]
¢þ
>SRA1026837
SRR035086.1438
454 Sequencing (SRP001807)
266
183
-
Leu
TAA
[SRA]
>SRA1027227
SRR035086.86437
454 Sequencing (SRP001807)
157
240
+
Leu
TAA
[SRA]
>SRA1027418
SRR035086.121505
454 Sequencing (SRP001807)
209
126
-
Leu
TAA
[SRA]
>SRA1027711
SRR035086.177975
454 Sequencing (SRP001807)
124
207
+
Leu
TAA
[SRA]
>SRA1027738
SRR035086.184376
454 Sequencing (SRP001807)
193
276
+
Leu
TAA
[SRA]
>SRA1027803
SRR035086.195951
454 Sequencing (SRP001807)
223
140
-
Leu
TAA
[SRA]
>SRA1027809
SRR035086.197813
454 Sequencing (SRP001807)
402
319
-
Leu
TAA
[SRA]
>SRA1028396
SRR035086.316710
454 Sequencing (SRP001807)
120
37
-
Leu
TAA
[SRA]
>SRA1028633
SRR035086.380253
454 Sequencing (SRP001807)
193
276
+
Leu
TAA
[SRA]
>SRA1051286
SRR035096.130223
454 Sequencing (SRP001817)
353
270
-
Leu
TAA
[SRA]
>SRA1051332
SRR035096.141310
454 Sequencing (SRP001817)
543
460
-
Leu
TAA
[SRA]
Identical group No.146679 (1 seq.)
>SRA1051344
SRR035096.147525
454 Sequencing (SRP001817)
481
395
-
Leu
TAA
[SRA]
Identical group No.157538 (44 seq.)
>WENV170614657
FUWD012839039
[FUWD] metagenome; unknown
5477
5561
+
Leu
TAA
[ENA]
¢þ
>WENV170614661
FUWD012839040
[FUWD] metagenome; unknown
736
820
+
Leu
TAA
[ENA]
¢þ
>SRA1023199
SRR035084.35820
454 Sequencing (SRP001805)
362
278
-
Leu
TAA
[SRA]
>SRA1023204
SRR035084.37341
454 Sequencing (SRP001805)
53
137
+
Leu
TAA
[SRA]
>SRA1023347
SRR035084.76542
454 Sequencing (SRP001805)
47
131
+
Leu
TAA
[SRA]
>SRA1023391
SRR035084.89098
454 Sequencing (SRP001805)
298
214
-
Leu
TAA
[SRA]
>SRA1023468
SRR035084.105382
454 Sequencing (SRP001805)
129
45
-
Leu
TAA
[SRA]
>SRA1024038
SRR035084.235361
454 Sequencing (SRP001805)
191
107
-
Leu
TAA
[SRA]
>SRA1024168
SRR035084.265530
454 Sequencing (SRP001805)
87
3
-
Leu
TAA
[SRA]
>SRA1024411
SRR035084.318537
454 Sequencing (SRP001805)
281
197
-
Leu
TAA
[SRA]
>SRA1024620
SRR035084.361694
454 Sequencing (SRP001805)
85
169
+
Leu
TAA
[SRA]
>SRA1024691
SRR035084.377620
454 Sequencing (SRP001805)
157
241
+
Leu
TAA
[SRA]
>SRA1024928
SRR035084.437122
454 Sequencing (SRP001805)
87
3
-
Leu
TAA
[SRA]
>SRA1025043
SRR035084.467113
454 Sequencing (SRP001805)
80
164
+
Leu
TAA
[SRA]
>SRA1025074
SRR035084.477010
454 Sequencing (SRP001805)
87
3
-
Leu
TAA
[SRA]
>SRA1025103
SRR035084.484771
454 Sequencing (SRP001805)
295
211
-
Leu
TAA
[SRA]
>SRA1025290
SRR035084.541861
454 Sequencing (SRP001805)
139
55
-
Leu
TAA
[SRA]
>SRA1025331
SRR035084.554311
454 Sequencing (SRP001805)
84
168
+
Leu
TAA
[SRA]
>SRA1028229
SRR035086.279889
454 Sequencing (SRP001807)
164
80
-
Leu
TAA
[SRA]
>SRA1028763
SRR035086.429353
454 Sequencing (SRP001807)
164
80
-
Leu
TAA
[SRA]
>SRA1032179
SRR035087.569953
454 Sequencing (SRP001808)
117
33
-
Leu
TAA
[SRA]
>SRA1045499
SRR035093.107319
454 Sequencing (SRP001814)
294
378
+
Leu
TAA
[SRA]
>SRA1045727
SRR035093.157868
454 Sequencing (SRP001814)
241
157
-
Leu
TAA
[SRA]
>SRA1045750
SRR035093.161483
454 Sequencing (SRP001814)
196
112
-
Leu
TAA
[SRA]
>SRA1045773
SRR035093.166396
454 Sequencing (SRP001814)
248
332
+
Leu
TAA
[SRA]
>SRA1045780
SRR035093.168372
454 Sequencing (SRP001814)
177
93
-
Leu
TAA
[SRA]
>SRA1045941
SRR035093.203112
454 Sequencing (SRP001814)
293
377
+
Leu
TAA
[SRA]
>SRA1046081
SRR035093.232419
454 Sequencing (SRP001814)
270
186
-
Leu
TAA
[SRA]
>SRA1046171
SRR035093.249669
454 Sequencing (SRP001814)
201
117
-
Leu
TAA
[SRA]
>SRA1046304
SRR035093.274349
454 Sequencing (SRP001814)
164
80
-
Leu
TAA
[SRA]
>SRA1046440
SRR035093.307647
454 Sequencing (SRP001814)
329
245
-
Leu
TAA
[SRA]
>SRA1046497
SRR035093.319922
454 Sequencing (SRP001814)
326
242
-
Leu
TAA
[SRA]
>SRA1046528
SRR035093.327163
454 Sequencing (SRP001814)
136
52
-
Leu
TAA
[SRA]
>SRA1046655
SRR035093.353382
454 Sequencing (SRP001814)
292
208
-
Leu
TAA
[SRA]
>SRA1046832
SRR035093.395541
454 Sequencing (SRP001814)
243
327
+
Leu
TAA
[SRA]
>SRA1046898
SRR035093.413036
454 Sequencing (SRP001814)
272
188
-
Leu
TAA
[SRA]
>SRA1047528
SRR035093.567724
454 Sequencing (SRP001814)
108
192
+
Leu
TAA
[SRA]
>SRA1047625
SRR035093.604859
454 Sequencing (SRP001814)
104
20
-
Leu
TAA
[SRA]
>SRA1050793
SRR035096.21177
454 Sequencing (SRP001817)
111
195
+
Leu
TAA
[SRA]
>SRA1052733
SRR035098.263421
454 Sequencing (SRP001819)
149
65
-
Leu
TAA
[SRA]
>SRA1052919
SRR035098.299811
454 Sequencing (SRP001819)
322
406
+
Leu
TAA
[SRA]
>SRA1052971
SRR035098.310099
454 Sequencing (SRP001819)
296
380
+
Leu
TAA
[SRA]
>SRA1053290
SRR035098.375803
454 Sequencing (SRP001819)
263
179
-
Leu
TAA
[SRA]
>SRA1053659
SRR035098.460666
454 Sequencing (SRP001819)
195
111
-
Leu
TAA
[SRA]
Identical group No.180226 (20 seq.)
>WENV170614504
FUWD012835092
[FUWD] metagenome; unknown
1430
1511
+
Leu
TAA
[ENA]
¢þ
>SRA1023371
SRR035084.81474
454 Sequencing (SRP001805)
466
385
-
Leu
TAA
[SRA]
>SRA1025329
SRR035084.554212
454 Sequencing (SRP001805)
269
188
-
Leu
TAA
[SRA]
>SRA1030738
SRR035087.322805
454 Sequencing (SRP001808)
317
398
+
Leu
TAA
[SRA]
>SRA1034088
SRR035088.481672
454 Sequencing (SRP001809)
40
121
+
Leu
TAA
[SRA]
>SRA1034503
SRR035089.110974
454 Sequencing (SRP001810)
101
182
+
Leu
TAA
[SRA]
>SRA1034580
SRR035089.128302
454 Sequencing (SRP001810)
157
238
+
Leu
TAA
[SRA]
>SRA1035214
SRR035089.261929
454 Sequencing (SRP001810)
157
238
+
Leu
TAA
[SRA]
>SRA1045290
SRR035093.58882
454 Sequencing (SRP001814)
104
185
+
Leu
TAA
[SRA]
>SRA1045579
SRR035093.128318
454 Sequencing (SRP001814)
226
145
-
Leu
TAA
[SRA]
>SRA1046098
SRR035093.236186
454 Sequencing (SRP001814)
183
102
-
Leu
TAA
[SRA]
>SRA1046348
SRR035093.284934
454 Sequencing (SRP001814)
240
159
-
Leu
TAA
[SRA]
>SRA1046546
SRR035093.330164
454 Sequencing (SRP001814)
125
44
-
Leu
TAA
[SRA]
>SRA1046891
SRR035093.411545
454 Sequencing (SRP001814)
17
98
+
Leu
TAA
[SRA]
>SRA1047297
SRR035093.505150
454 Sequencing (SRP001814)
104
185
+
Leu
TAA
[SRA]
>SRA1051075
SRR035096.80226
454 Sequencing (SRP001817)
96
177
+
Leu
TAA
[SRA]
>SRA1051863
SRR035098.90054
454 Sequencing (SRP001819)
137
218
+
Leu
TAA
[SRA]
>SRA1051956
SRR035098.113541
454 Sequencing (SRP001819)
337
418
+
Leu
TAA
[SRA]
>SRA1052335
SRR035098.183899
454 Sequencing (SRP001819)
287
206
-
Leu
TAA
[SRA]
>SRA1052449
SRR035098.206276
454 Sequencing (SRP001819)
337
418
+
Leu
TAA
[SRA]
Identical group No.198288 (4 seq.)
>WENV170622832
FUWD013122991
[FUWD] metagenome; unknown
314
398
+
Leu
TAA
[ENA]
¢þ
>WENV170631050
FUWD013336556
[FUWD] metagenome; unknown
314
398
+
Leu
TAA
[ENA]
¢þ
>SRA1050842
SRR035096.31266
454 Sequencing (SRP001817)
225
309
+
Leu
TAA
[SRA]
>SRA1052562
SRR035098.229297
454 Sequencing (SRP001819)
31
115
+
Leu
TAA
[SRA]
Identical group No.219653 (3 seq.)
>WENV170608194
FUWD010900850
[FUWD] metagenome; unknown
304
387
+
Leu
TAA
[ENA]
¢þ
>SRA1046155
SRR035093.246938
454 Sequencing (SRP001814)
24
107
+
Leu
TAA
[SRA]
>SRA1051200
SRR035096.107871
454 Sequencing (SRP001817)
314
397
+
Leu
TAA
[SRA]
Identical group No.226798 (1 seq.)
>SRA1051160
SRR035096.98347
454 Sequencing (SRP001817)
174
91
-
Leu
TAA
[SRA]
Identical group No.226799 (1 seq.)
>SRA1051440
SRR035096.183876
454 Sequencing (SRP001817)
137
55
-
Leu
TAA
[SRA]
Identical group No.300915 (8 seq.)
>WENV170627347
FUWD013232623
[FUWD] metagenome; unknown
78899
78823
-
Leu
TAA
[ENA]
¢þ
>SRA1023442
SRR035084.99931
454 Sequencing (SRP001805)
315
239
-
Leu
TAA
[SRA]
>SRA1024794
SRR035084.403450
454 Sequencing (SRP001805)
86
162
+
Leu
TAA
[SRA]
>SRA1025275
SRR035084.535922
454 Sequencing (SRP001805)
181
105
-
Leu
TAA
[SRA]
>SRA1027654
SRR035086.167392
454 Sequencing (SRP001807)
365
441
+
Leu
TAA
[SRA]
>SRA1046286
SRR035093.271238
454 Sequencing (SRP001814)
483
407
-
Leu
TAA
[SRA]
>SRA1051147
SRR035096.94770
454 Sequencing (SRP001817)
406
482
+
Leu
TAA
[SRA]
>SRA1051383
SRR035096.164395
454 Sequencing (SRP001817)
130
206
+
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK