This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = TAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37825 (2 seq.)
>WENV170627341
FUWD013232623
[FUWD] metagenome; unknown
80860
80770
-
Leu
TAG
[ENA]
¢þ
>SRA1050945
SRR035096.56911
454 Sequencing (SRP001817)
386
296
-
Leu
TAG
[SRA]
Identical group No.131850 (3 seq.)
>WENV170627342
FUWD013232623
[FUWD] metagenome; unknown
80766
80680
-
Leu
TAG
[ENA]
¢þ
>SRA1024378
SRR035084.310925
454 Sequencing (SRP001805)
9
95
+
Leu
TAG
[SRA]
>SRA1050946
SRR035096.56911
454 Sequencing (SRP001817)
292
206
-
Leu
TAG
[SRA]
Identical group No.157546 (5 seq.)
>WENV170619804
FUWD013021624
[FUWD] metagenome; unknown
2107
2022
-
Leu
TAG
[ENA]
¢þ
>WENV170627924
FUWD013239836
[FUWD] metagenome; unknown
2107
2022
-
Leu
TAG
[ENA]
¢þ
>SRA1045669
SRR035093.144600
454 Sequencing (SRP001814)
80
165
+
Leu
TAG
[SRA]
>SRA1047069
SRR035093.448744
454 Sequencing (SRP001814)
58
143
+
Leu
TAG
[SRA]
>SRA1050783
SRR035096.20132
454 Sequencing (SRP001817)
319
404
+
Leu
TAG
[SRA]
Identical group No.186144 (9 seq.)
>WENV170627319
FUWD013232619
[FUWD] metagenome; unknown
82117
82201
+
Leu
TAG
[ENA]
¢þ
>SRA1025343
SRR035084.558208
454 Sequencing (SRP001805)
50
134
+
Leu
TAG
[SRA]
>SRA1028243
SRR035086.282510
454 Sequencing (SRP001807)
332
248
-
Leu
TAG
[SRA]
>SRA1046540
SRR035093.329267
454 Sequencing (SRP001814)
247
331
+
Leu
TAG
[SRA]
>SRA1050854
SRR035096.32598
454 Sequencing (SRP001817)
25
109
+
Leu
TAG
[SRA]
>SRA1051044
SRR035096.75149
454 Sequencing (SRP001817)
223
139
-
Leu
TAG
[SRA]
>SRA1051188
SRR035096.104239
454 Sequencing (SRP001817)
25
109
+
Leu
TAG
[SRA]
>SRA1052410
SRR035098.197520
454 Sequencing (SRP001819)
97
181
+
Leu
TAG
[SRA]
>SRA1052895
SRR035098.295651
454 Sequencing (SRP001819)
97
181
+
Leu
TAG
[SRA]
Identical group No.211663 (2 seq.)
>SRA1050888
SRR035096.43352
454 Sequencing (SRP001817)
270
187
-
Leu
TAG
[SRA]
>SRA1050980
SRR035096.64847
454 Sequencing (SRP001817)
182
99
-
Leu
TAG
[SRA]
Identical group No.222890 (3 seq.)
>WENV170621821
FUWD013074359
[FUWD] metagenome; unknown
1994
1911
-
Leu
TAG
[ENA]
¢þ
>WENV170630023
FUWD013289915
[FUWD] metagenome; unknown
1994
1911
-
Leu
TAG
[ENA]
¢þ
>SRA1050973
SRR035096.63726
454 Sequencing (SRP001817)
245
328
+
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK