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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = TCC
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.484586 (10 seq.)
>WENV170625320
FUWD013195939
[FUWD] metagenome; unknown
871
796
-
Gly
TCC
[ENA]
¢þ
>WENV170633560
FUWD013398666
[FUWD] metagenome; unknown
871
796
-
Gly
TCC
[ENA]
¢þ
>SRA1045211
SRR035093.30781
454 Sequencing (SRP001814)
272
197
-
Gly
TCC
[SRA]
>SRA1045221
SRR035093.34490
454 Sequencing (SRP001814)
144
219
+
Gly
TCC
[SRA]
>SRA1045540
SRR035093.116192
454 Sequencing (SRP001814)
260
185
-
Gly
TCC
[SRA]
>SRA1045548
SRR035093.119955
454 Sequencing (SRP001814)
500
425
-
Gly
TCC
[SRA]
>SRA1045789
SRR035093.169885
454 Sequencing (SRP001814)
78
3
-
Gly
TCC
[SRA]
>SRA1046919
SRR035093.418863
454 Sequencing (SRP001814)
182
107
-
Gly
TCC
[SRA]
>SRA1050929
SRR035096.53344
454 Sequencing (SRP001817)
132
57
-
Gly
TCC
[SRA]
>SRA1051005
SRR035096.68565
454 Sequencing (SRP001817)
281
206
-
Gly
TCC
[SRA]
Identical group No.710459 (54 seq.)
>WENV180112397
OAPP01017963
[OAPP] marine metagenome; Surface water
554
483
-
Gly
TCC
[ENA]
¢þ
>WENV180394625
OBPS01028576
[OBPS] marine metagenome; ENVO:00002010 seawater
367
438
+
Gly
TCC
[ENA]
¢þ
>WENV180591558
OCOV01046276
[OCOV] marine metagenome; ENVO:01000301
276
205
-
Gly
TCC
[ENA]
¢þ
>WENV180595583
OCPE01008452
[OCPE] marine metagenome; ENVO.00002150
312
241
-
Gly
TCC
[ENA]
¢þ
>WENV180637348
OCRG01011176
[OCRG] marine metagenome; seawater
539
610
+
Gly
TCC
[ENA]
¢þ
>WENV180637504
OCRG01031596
[OCRG] marine metagenome; seawater
403
332
-
Gly
TCC
[ENA]
¢þ
>WENV170599038
FUWD010059584
[FUWD] metagenome; unknown
216
145
-
Gly
TCC
[ENA]
¢þ
>WENV170599043
FUWD010059863
[FUWD] metagenome; unknown
246
317
+
Gly
TCC
[ENA]
¢þ
>WENV170599320
FUWD010071494
[FUWD] metagenome; unknown
159
230
+
Gly
TCC
[ENA]
¢þ
>WENV170599342
FUWD010072071
[FUWD] metagenome; unknown
82
153
+
Gly
TCC
[ENA]
¢þ
>WENV170617021
FUWD012911677
[FUWD] metagenome; unknown
372
443
+
Gly
TCC
[ENA]
¢þ
>WENV170617227
FUWD012918840
[FUWD] metagenome; unknown
908
837
-
Gly
TCC
[ENA]
¢þ
>WENV170617230
FUWD012918841
[FUWD] metagenome; unknown
296
225
-
Gly
TCC
[ENA]
¢þ
>WENV170617236
FUWD012918842
[FUWD] metagenome; unknown
135
64
-
Gly
TCC
[ENA]
¢þ
>WENV170619871
FUWD013022405
[FUWD] metagenome; unknown
936
865
-
Gly
TCC
[ENA]
¢þ
>WENV170624816
FUWD013187198
[FUWD] metagenome; unknown
40
111
+
Gly
TCC
[ENA]
¢þ
>WENV170627991
FUWD013240563
[FUWD] metagenome; unknown
936
865
-
Gly
TCC
[ENA]
¢þ
>SRA1026858
SRR035086.12873
454 Sequencing (SRP001807)
10
81
+
Gly
TCC
[SRA]
>SRA1026865
SRR035086.15037
454 Sequencing (SRP001807)
183
112
-
Gly
TCC
[SRA]
>SRA1026891
SRR035086.21545
454 Sequencing (SRP001807)
398
469
+
Gly
TCC
[SRA]
>SRA1026947
SRR035086.31202
454 Sequencing (SRP001807)
189
118
-
Gly
TCC
[SRA]
>SRA1026969
SRR035086.35748
454 Sequencing (SRP001807)
344
273
-
Gly
TCC
[SRA]
>SRA1027176
SRR035086.75250
454 Sequencing (SRP001807)
202
273
+
Gly
TCC
[SRA]
>SRA1027208
SRR035086.82073
454 Sequencing (SRP001807)
82
10
-
Gly
TCC
[SRA]
>SRA1027210
SRR035086.82092
454 Sequencing (SRP001807)
218
289
+
Gly
TCC
[SRA]
>SRA1027264
SRR035086.91818
454 Sequencing (SRP001807)
169
240
+
Gly
TCC
[SRA]
>SRA1027267
SRR035086.92921
454 Sequencing (SRP001807)
50
121
+
Gly
TCC
[SRA]
>SRA1027270
SRR035086.93452
454 Sequencing (SRP001807)
316
245
-
Gly
TCC
[SRA]
>SRA1027320
SRR035086.105867
454 Sequencing (SRP001807)
257
328
+
Gly
TCC
[SRA]
>SRA1027350
SRR035086.110604
454 Sequencing (SRP001807)
226
155
-
Gly
TCC
[SRA]
>SRA1027614
SRR035086.160741
454 Sequencing (SRP001807)
330
401
+
Gly
TCC
[SRA]
>SRA1027717
SRR035086.178505
454 Sequencing (SRP001807)
170
241
+
Gly
TCC
[SRA]
>SRA1027977
SRR035086.230832
454 Sequencing (SRP001807)
281
352
+
Gly
TCC
[SRA]
>SRA1028106
SRR035086.259441
454 Sequencing (SRP001807)
311
240
-
Gly
TCC
[SRA]
>SRA1028325
SRR035086.299995
454 Sequencing (SRP001807)
43
114
+
Gly
TCC
[SRA]
>SRA1028380
SRR035086.312253
454 Sequencing (SRP001807)
155
84
-
Gly
TCC
[SRA]
>SRA1028405
SRR035086.318895
454 Sequencing (SRP001807)
92
163
+
Gly
TCC
[SRA]
>SRA1028470
SRR035086.333936
454 Sequencing (SRP001807)
190
261
+
Gly
TCC
[SRA]
>SRA1028488
SRR035086.338776
454 Sequencing (SRP001807)
226
155
-
Gly
TCC
[SRA]
>SRA1028538
SRR035086.352118
454 Sequencing (SRP001807)
230
301
+
Gly
TCC
[SRA]
>SRA1028623
SRR035086.377399
454 Sequencing (SRP001807)
391
320
-
Gly
TCC
[SRA]
>SRA1028669
SRR035086.393369
454 Sequencing (SRP001807)
170
241
+
Gly
TCC
[SRA]
>SRA1028671
SRR035086.393387
454 Sequencing (SRP001807)
275
204
-
Gly
TCC
[SRA]
>SRA1028727
SRR035086.410838
454 Sequencing (SRP001807)
230
301
+
Gly
TCC
[SRA]
>SRA1050792
SRR035096.21064
454 Sequencing (SRP001817)
366
295
-
Gly
TCC
[SRA]
>SRA1050852
SRR035096.32183
454 Sequencing (SRP001817)
447
376
-
Gly
TCC
[SRA]
>SRA1050880
SRR035096.41252
454 Sequencing (SRP001817)
210
281
+
Gly
TCC
[SRA]
>SRA1050964
SRR035096.62067
454 Sequencing (SRP001817)
214
285
+
Gly
TCC
[SRA]
>SRA1050986
SRR035096.65673
454 Sequencing (SRP001817)
224
295
+
Gly
TCC
[SRA]
>SRA1051090
SRR035096.83683
454 Sequencing (SRP001817)
309
380
+
Gly
TCC
[SRA]
>SRA1051345
SRR035096.148506
454 Sequencing (SRP001817)
408
337
-
Gly
TCC
[SRA]
>SRA1051388
SRR035096.165323
454 Sequencing (SRP001817)
137
208
+
Gly
TCC
[SRA]
>SRA1051408
SRR035096.168952
454 Sequencing (SRP001817)
66
137
+
Gly
TCC
[SRA]
>WENV074533
AACY023981616
Marine microbial communities from Global Ocean Sampling (GOS)
454
380
-
Gly
TCC
[ENA]
Identical group No.710524 (4 seq.)
>WENV170601428
FUWD010172305
[FUWD] metagenome; unknown
156
82
-
Gly
TCC
[ENA]
¢þ
>SRA1027492
SRR035086.134491
454 Sequencing (SRP001807)
418
492
+
Gly
TCC
[SRA]
>SRA1028706
SRR035086.405586
454 Sequencing (SRP001807)
164
90
-
Gly
TCC
[SRA]
>SRA1051399
SRR035096.166911
454 Sequencing (SRP001817)
117
43
-
Gly
TCC
[SRA]
Identical group No.756608 (1 seq.)
>SRA1050900
SRR035096.47271
454 Sequencing (SRP001817)
37
109
+
Gly
TCC
[SRA]
Identical group No.804926 (5 seq.)
>WENV170599305
FUWD010071245
[FUWD] metagenome; unknown
102
173
+
Gly
TCC
[ENA]
¢þ
>WENV170621819
FUWD013074359
[FUWD] metagenome; unknown
2300
2229
-
Gly
TCC
[ENA]
¢þ
>WENV170630021
FUWD013289915
[FUWD] metagenome; unknown
2300
2229
-
Gly
TCC
[ENA]
¢þ
>SRA1051116
SRR035096.89698
454 Sequencing (SRP001817)
64
135
+
Gly
TCC
[SRA]
>SRA1053451
SRR035098.407303
454 Sequencing (SRP001819)
271
342
+
Gly
TCC
[SRA]
Identical group No.804992 (2 seq.)
>WENV170603399
FUWD010307547
[FUWD] metagenome; unknown
141
70
-
Gly
TCC
[ENA]
¢þ
>SRA1050989
SRR035096.66026
454 Sequencing (SRP001817)
123
52
-
Gly
TCC
[SRA]
Identical group No.805440 (5 seq.)
>WENV170622266
FUWD013094832
[FUWD] metagenome; unknown
799
729
-
Gly
TCC
[ENA]
¢þ
>WENV170630486
FUWD013309551
[FUWD] metagenome; unknown
799
729
-
Gly
TCC
[ENA]
¢þ
>SRA1050889
SRR035096.43393
454 Sequencing (SRP001817)
84
154
+
Gly
TCC
[SRA]
>SRA1051786
SRR035098.75737
454 Sequencing (SRP001819)
260
190
-
Gly
TCC
[SRA]
>SRA1053816
SRR035098.503741
454 Sequencing (SRP001819)
60
130
+
Gly
TCC
[SRA]
Identical group No.821315 (2 seq.)
>W141066879
ARYK01000001
Alphaproteobacteria
Hyphomonas johnsonii MHS-2 [ARYK]
53179
53252
+
Gly
TCC
[ENA]
¡û
>SRA1051007
SRR035096.68883
454 Sequencing (SRP001817)
144
217
+
Gly
TCC
[SRA]
Identical group No.826267 (1 seq.)
>SRA1051061
SRR035096.77541
454 Sequencing (SRP001817)
249
177
-
Gly
TCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK