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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = TCG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285343 (36 seq.)
>C171088756
CP019046
Gammaproteobacteria
Halioglobus pacificus RR3-57 [CP019046]
1421043
1421119
+
Arg
TCG
-
¡û
>w021594
AAVT01000009
Gammaproteobacteria
marine gamma proteobacterium HTCC2143 [AAVT]
78208
78286
+
Arg
TCG
[ENA]
¡û
>w013918
AAOA01000004
Gammaproteobacteria
Congregibacter litoralis KT 71 [AAOA]
205375
205451
+
Arg
TCG
[ENA]
¡û
>WENV180282632
OBIC01000551
[OBIC] beach sand metagenome; beach sand
1493
1417
-
Arg
TCG
[ENA]
¢þ
>WENV180294001
OBIY01008422
[OBIY] beach sand metagenome; beach sand
1478
1402
-
Arg
TCG
[ENA]
¢þ
>WENV180359107
OBNR01006818
[OBNR] marine metagenome; Seawater_00002010_00002149
164
240
+
Arg
TCG
[ENA]
¢þ
>WENV180362089
OBNW01034909
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
288
364
+
Arg
TCG
[ENA]
¢þ
>WENV180378791
OBOO01146233
[OBOO] marine metagenome; ENVO 00002150
125
201
+
Arg
TCG
[ENA]
¢þ
>WENV180393479
OBPQ01050885
[OBPQ] marine metagenome; polypropylene bottle
305
229
-
Arg
TCG
[ENA]
¢þ
>WENV180396910
OBPW01031975
[OBPW] marine metagenome; seawater
282
206
-
Arg
TCG
[ENA]
¢þ
>WENV180398823
OBQB01001472
[OBQB] marine metagenome; ENVO.00002150
407
483
+
Arg
TCG
[ENA]
¢þ
>WENV180587314
OCON01167959
[OCON] marine metagenome; seawater
110
186
+
Arg
TCG
[ENA]
¢þ
>WENV181092987
OEBK01136108
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
291
215
-
Arg
TCG
[ENA]
¢þ
>WENV181329604
OFLX01027346
[OFLX] seawater metagenome; seawater
446
522
+
Arg
TCG
[ENA]
¢þ
>WENV181392195
OFRW01010208
[OFRW] seawater metagenome; seawater
300
224
-
Arg
TCG
[ENA]
¢þ
>WENV182548716
OJBX01000027
[OJBX] seawater metagenome; Sea water
148075
148151
+
Arg
TCG
[ENA]
¢þ
>WENV182568249
OJES01001426
[OJES] seawater metagenome; Sea water
876
952
+
Arg
TCG
[ENA]
¢þ
>WENV182576505
OJFX01042358
[OJFX] seawater metagenome; Sea water
220
296
+
Arg
TCG
[ENA]
¢þ
>WENV182579788
OJGU01000004
[OJGU] seawater metagenome; Sea water
152289
152365
+
Arg
TCG
[ENA]
¢þ
>WENV182581251
OJGX01001479
[OJGX] seawater metagenome; Sea water
7638
7714
+
Arg
TCG
[ENA]
¢þ
>WENV182591551
OJIO01000383
[OJIO] seawater metagenome; Sea water
22024
21948
-
Arg
TCG
[ENA]
¢þ
>WENV183062061
OLID01000003
[OLID] seawater metagenome; Sea water
165335
165411
+
Arg
TCG
[ENA]
¢þ
>WENV183626917
OOGK01010562
[OOGK] marine metagenome; seawater
698
774
+
Arg
TCG
[ENA]
¢þ
>WENV183700302
OZSS01168531
[OZSS] metagenome; Seawater sample
378
302
-
Arg
TCG
[ENA]
¢þ
>WENV170535832
CEWP01111838
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1653
1729
+
Arg
TCG
[ENA]
¢þ
>WENV170566858
FLLY01008145
[FLLY] seawater metagenome; seawater
380
304
-
Arg
TCG
[ENA]
¢þ
>WENV170568559
FLMP01049767
[FLMP] seawater metagenome; seawater
698
774
+
Arg
TCG
[ENA]
¢þ
>WENV170604934
FUWD010436738
[FUWD] metagenome; unknown
456
532
+
Arg
TCG
[ENA]
¢þ
>WENV170816528
MDSX01031991
[MDSX] marine metagenome; seawater
4112
4036
-
Arg
TCG
[ENA]
¢þ
>WENV170881579
MDTC01133470
[MDTC] marine metagenome; seawater
25935
26011
+
Arg
TCG
[ENA]
¢þ
>WENV170922766
MDTG01037169
[MDTG] marine metagenome; seawater
5226
5150
-
Arg
TCG
[ENA]
¢þ
>W09112195
ABXQ01000068
Gammaproteobacteria
marine gamma proteobacterium HTCC2148 [ABXQ]
40850
40926
+
Arg
TCG
[ENA]
¡û
>W09118431
ACCX01000007
Gammaproteobacteria
gamma proteobacterium NOR5-3 [ACCX]
41706
41630
-
Arg
TCG
[ENA]
¡û
>W1810196409
PKUS01000001
Gammaproteobacteria
Pseudohalioglobus lutimaris HF004 [PKUS]
98214
98290
+
Arg
TCG
[ENA]
¡û
>SRA1050758
SRR035096.17466
454 Sequencing (SRP001817)
206
282
+
Arg
TCG
[SRA]
>WENV055970
AACY023245047
Marine microbial communities from Global Ocean Sampling (GOS)
1173
1249
+
Arg
TCG
[ENA]
Identical group No.335163 (2 seq.)
>WENV170572092
FLOH01000526
[FLOH] marine metagenome; water
3498
3420
-
Arg
TCG
[ENA]
¢þ
>SRA1051178
SRR035096.102011
454 Sequencing (SRP001817)
175
101
-
Arg
TCG
[SRA]
Identical group No.422570 (1 seq.)
>SRA1051425
SRR035096.175214
454 Sequencing (SRP001817)
128
55
-
Arg
TCG
[SRA]
Identical group No.548584 (36 seq.)
>WENV180637821
OCRG01141051
[OCRG] marine metagenome; seawater
156
228
+
Arg
TCG
[ENA]
¢þ
>WENV170617213
FUWD012918122
[FUWD] metagenome; unknown
170
98
-
Arg
TCG
[ENA]
¢þ
>WENV170617214
FUWD012918124
[FUWD] metagenome; unknown
3672
3600
-
Arg
TCG
[ENA]
¢þ
>SRA1025325
SRR035084.552432
454 Sequencing (SRP001805)
198
126
-
Arg
TCG
[SRA]
>SRA1026856
SRR035086.11278
454 Sequencing (SRP001807)
210
138
-
Arg
TCG
[SRA]
>SRA1026870
SRR035086.16971
454 Sequencing (SRP001807)
90
18
-
Arg
TCG
[SRA]
>SRA1026889
SRR035086.21482
454 Sequencing (SRP001807)
372
444
+
Arg
TCG
[SRA]
>SRA1027073
SRR035086.57270
454 Sequencing (SRP001807)
99
171
+
Arg
TCG
[SRA]
>SRA1027148
SRR035086.71703
454 Sequencing (SRP001807)
97
169
+
Arg
TCG
[SRA]
>SRA1027185
SRR035086.76707
454 Sequencing (SRP001807)
364
436
+
Arg
TCG
[SRA]
>SRA1027219
SRR035086.84474
454 Sequencing (SRP001807)
226
298
+
Arg
TCG
[SRA]
>SRA1027344
SRR035086.109781
454 Sequencing (SRP001807)
297
225
-
Arg
TCG
[SRA]
>SRA1027345
SRR035086.109785
454 Sequencing (SRP001807)
318
246
-
Arg
TCG
[SRA]
>SRA1027346
SRR035086.110371
454 Sequencing (SRP001807)
317
245
-
Arg
TCG
[SRA]
>SRA1027536
SRR035086.143696
454 Sequencing (SRP001807)
230
158
-
Arg
TCG
[SRA]
>SRA1027559
SRR035086.146942
454 Sequencing (SRP001807)
96
168
+
Arg
TCG
[SRA]
>SRA1027570
SRR035086.149949
454 Sequencing (SRP001807)
138
210
+
Arg
TCG
[SRA]
>SRA1027608
SRR035086.159397
454 Sequencing (SRP001807)
511
439
-
Arg
TCG
[SRA]
>SRA1027693
SRR035086.175238
454 Sequencing (SRP001807)
242
314
+
Arg
TCG
[SRA]
>SRA1027758
SRR035086.187725
454 Sequencing (SRP001807)
340
412
+
Arg
TCG
[SRA]
>SRA1028102
SRR035086.259184
454 Sequencing (SRP001807)
207
279
+
Arg
TCG
[SRA]
>SRA1028150
SRR035086.267183
454 Sequencing (SRP001807)
130
58
-
Arg
TCG
[SRA]
>SRA1028272
SRR035086.289145
454 Sequencing (SRP001807)
183
255
+
Arg
TCG
[SRA]
>SRA1028283
SRR035086.291199
454 Sequencing (SRP001807)
112
40
-
Arg
TCG
[SRA]
>SRA1028355
SRR035086.307633
454 Sequencing (SRP001807)
90
18
-
Arg
TCG
[SRA]
>SRA1028361
SRR035086.308327
454 Sequencing (SRP001807)
239
167
-
Arg
TCG
[SRA]
>SRA1028390
SRR035086.314651
454 Sequencing (SRP001807)
239
167
-
Arg
TCG
[SRA]
>SRA1028467
SRR035086.333337
454 Sequencing (SRP001807)
274
202
-
Arg
TCG
[SRA]
>SRA1028485
SRR035086.337192
454 Sequencing (SRP001807)
86
158
+
Arg
TCG
[SRA]
>SRA1028489
SRR035086.338822
454 Sequencing (SRP001807)
274
202
-
Arg
TCG
[SRA]
>SRA1050787
SRR035096.20531
454 Sequencing (SRP001817)
420
348
-
Arg
TCG
[SRA]
>SRA1050865
SRR035096.38115
454 Sequencing (SRP001817)
345
273
-
Arg
TCG
[SRA]
>SRA1050952
SRR035096.58420
454 Sequencing (SRP001817)
50
122
+
Arg
TCG
[SRA]
>SRA1051088
SRR035096.83611
454 Sequencing (SRP001817)
214
142
-
Arg
TCG
[SRA]
>SRA1051168
SRR035096.101117
454 Sequencing (SRP001817)
65
137
+
Arg
TCG
[SRA]
>SRA1051199
SRR035096.107402
454 Sequencing (SRP001817)
110
38
-
Arg
TCG
[SRA]
Identical group No.593612 (5 seq.)
>SRA1026853
SRR035086.10614
454 Sequencing (SRP001807)
287
215
-
Arg
TCG
[SRA]
>SRA1027415
SRR035086.121094
454 Sequencing (SRP001807)
132
204
+
Arg
TCG
[SRA]
>SRA1028343
SRR035086.305697
454 Sequencing (SRP001807)
188
116
-
Arg
TCG
[SRA]
>SRA1050924
SRR035096.52775
454 Sequencing (SRP001817)
182
110
-
Arg
TCG
[SRA]
>SRA1051384
SRR035096.164729
454 Sequencing (SRP001817)
270
198
-
Arg
TCG
[SRA]
Identical group No.620470 (1 seq.)
>SRA1051015
SRR035096.69541
454 Sequencing (SRP001817)
387
459
+
Arg
TCG
[SRA]
Identical group No.710462 (3 seq.)
>WENV170599175
FUWD010065754
[FUWD] metagenome; unknown
669
595
-
Arg
TCG
[ENA]
¢þ
>SRA1050931
SRR035096.54062
454 Sequencing (SRP001817)
516
442
-
Arg
TCG
[SRA]
>SRA1053546
SRR035098.434226
454 Sequencing (SRP001819)
121
195
+
Arg
TCG
[SRA]
Identical group No.756619 (1 seq.)
>SRA1051359
SRR035096.151639
454 Sequencing (SRP001817)
500
429
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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