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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = TGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.43238 (1 seq.)
>SRA1050822
SRR035096.26375
454 Sequencing (SRP001817)
98
10
-
Ser
TGA
[SRA]
Identical group No.83516 (2 seq.)
>WENV180381984
OBOS01063232
[OBOS] marine metagenome; ENVO 00002150
329
242
-
Ser
TGA
[ENA]
¢þ
>SRA1051138
SRR035096.94079
454 Sequencing (SRP001817)
522
436
-
Ser
TGA
[SRA]
Identical group No.84538 (1 seq.)
>SRA1051422
SRR035096.174317
454 Sequencing (SRP001817)
247
159
-
Ser
TGA
[SRA]
Identical group No.198235 (14 seq.)
>WENV180393095
OBPP01072619
[OBPP] marine metagenome; ENVO:00002042
144
225
+
Ser
TGA
[ENA]
¢þ
>WENV180398831
OBQB01002141
[OBQB] marine metagenome; ENVO.00002150
144
225
+
Ser
TGA
[ENA]
¢þ
>WENV180637210
OCRG01002801
[OCRG] marine metagenome; seawater
693
612
-
Ser
TGA
[ENA]
¢þ
>WENV170617457
FUWD012926983
[FUWD] metagenome; unknown
3002
3083
+
Ser
TGA
[ENA]
¢þ
>SRA1026911
SRR035086.27171
454 Sequencing (SRP001807)
51
132
+
Ser
TGA
[SRA]
>SRA1027419
SRR035086.121528
454 Sequencing (SRP001807)
148
229
+
Ser
TGA
[SRA]
>SRA1027586
SRR035086.151773
454 Sequencing (SRP001807)
282
363
+
Ser
TGA
[SRA]
>SRA1027812
SRR035086.198509
454 Sequencing (SRP001807)
435
354
-
Ser
TGA
[SRA]
>SRA1027948
SRR035086.224785
454 Sequencing (SRP001807)
207
288
+
Ser
TGA
[SRA]
>SRA1028597
SRR035086.369141
454 Sequencing (SRP001807)
302
383
+
Ser
TGA
[SRA]
>SRA1028663
SRR035086.391966
454 Sequencing (SRP001807)
283
202
-
Ser
TGA
[SRA]
>SRA1028687
SRR035086.397798
454 Sequencing (SRP001807)
63
144
+
Ser
TGA
[SRA]
>SRA1050897
SRR035096.45855
454 Sequencing (SRP001817)
482
401
-
Ser
TGA
[SRA]
>SRA1051190
SRR035096.104705
454 Sequencing (SRP001817)
183
264
+
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK