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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = TTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.672345 (7 seq.)
>WENV170627323
FUWD013232623
[FUWD] metagenome; unknown
173433
173361
-
Sup
TTA
[ENA]
¢þ
>SRA1024457
SRR035084.329641
454 Sequencing (SRP001805)
186
258
+
Sup
TTA
[SRA]
>SRA1025148
SRR035084.498715
454 Sequencing (SRP001805)
84
12
-
Sup
TTA
[SRA]
>SRA1028183
SRR035086.271177
454 Sequencing (SRP001807)
226
154
-
Sup
TTA
[SRA]
>SRA1029618
SRR035087.152076
454 Sequencing (SRP001808)
98
170
+
Sup
TTA
[SRA]
>SRA1050826
SRR035096.27299
454 Sequencing (SRP001817)
209
137
-
Sup
TTA
[SRA]
>SRA1051112
SRR035096.87974
454 Sequencing (SRP001817)
209
137
-
Sup
TTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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