This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001819)
Anticodon = ACT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28506 (1 seq.)
>SRA1052614
SRR035098.237654
454 Sequencing (SRP001819)
244
333
+
Ser
ACT
[SRA]
Identical group No.37809 (3 seq.)
>WENV170621995
FUWD013082987
[FUWD] metagenome; unknown
1545
1457
-
Ser
ACT
[ENA]
¢þ
>WENV170629412
FUWD013269723
[FUWD] metagenome; unknown
21070
20982
-
Ser
ACT
[ENA]
¢þ
>SRA1052477
SRR035098.211274
454 Sequencing (SRP001819)
191
103
-
Ser
ACT
[SRA]
Identical group No.57976 (7 seq.)
>WENV170611924
FUWD012447837
[FUWD] metagenome; unknown
340
251
-
Ser
ACT
[ENA]
¢þ
>SRA1027531
SRR035086.143107
454 Sequencing (SRP001807)
350
261
-
Ser
ACT
[SRA]
>SRA1027546
SRR035086.145136
454 Sequencing (SRP001807)
349
260
-
Ser
ACT
[SRA]
>SRA1028055
SRR035086.248139
454 Sequencing (SRP001807)
350
261
-
Ser
ACT
[SRA]
>SRA1028400
SRR035086.318043
454 Sequencing (SRP001807)
350
261
-
Ser
ACT
[SRA]
>SRA1051926
SRR035098.104894
454 Sequencing (SRP001819)
199
288
+
Ser
ACT
[SRA]
>SRA1052566
SRR035098.229909
454 Sequencing (SRP001819)
165
254
+
Ser
ACT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK