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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001820)
Anticodon = CAA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87059 (130 seq.)
>WENV170613661
FUWD012815687
[FUWD] metagenome; unknown
3440
3353
-
Leu
CAA
[ENA]
¢þ
>SRA1017033
SRR035082.70134
454 Sequencing (SRP001803)
328
241
-
Leu
CAA
[SRA]
>SRA1019426
SRR035082.454775
454 Sequencing (SRP001803)
193
106
-
Leu
CAA
[SRA]
>SRA1019898
SRR035083.17490
454 Sequencing (SRP001804)
364
451
+
Leu
CAA
[SRA]
>SRA1019940
SRR035083.26038
454 Sequencing (SRP001804)
341
428
+
Leu
CAA
[SRA]
>SRA1019997
SRR035083.38601
454 Sequencing (SRP001804)
118
205
+
Leu
CAA
[SRA]
>SRA1020060
SRR035083.51958
454 Sequencing (SRP001804)
118
205
+
Leu
CAA
[SRA]
>SRA1020096
SRR035083.57145
454 Sequencing (SRP001804)
127
40
-
Leu
CAA
[SRA]
>SRA1020138
SRR035083.61877
454 Sequencing (SRP001804)
241
328
+
Leu
CAA
[SRA]
>SRA1020160
SRR035083.64673
454 Sequencing (SRP001804)
184
271
+
Leu
CAA
[SRA]
>SRA1020205
SRR035083.74083
454 Sequencing (SRP001804)
265
352
+
Leu
CAA
[SRA]
>SRA1020297
SRR035083.92792
454 Sequencing (SRP001804)
416
329
-
Leu
CAA
[SRA]
>SRA1020362
SRR035083.101903
454 Sequencing (SRP001804)
159
72
-
Leu
CAA
[SRA]
>SRA1020413
SRR035083.110927
454 Sequencing (SRP001804)
380
467
+
Leu
CAA
[SRA]
>SRA1020463
SRR035083.118895
454 Sequencing (SRP001804)
362
449
+
Leu
CAA
[SRA]
>SRA1020468
SRR035083.119465
454 Sequencing (SRP001804)
150
237
+
Leu
CAA
[SRA]
>SRA1020553
SRR035083.133838
454 Sequencing (SRP001804)
159
72
-
Leu
CAA
[SRA]
>SRA1020561
SRR035083.135127
454 Sequencing (SRP001804)
3
90
+
Leu
CAA
[SRA]
>SRA1020573
SRR035083.136610
454 Sequencing (SRP001804)
138
225
+
Leu
CAA
[SRA]
>SRA1020662
SRR035083.148578
454 Sequencing (SRP001804)
203
116
-
Leu
CAA
[SRA]
>SRA1020692
SRR035083.152004
454 Sequencing (SRP001804)
386
299
-
Leu
CAA
[SRA]
>SRA1020726
SRR035083.155811
454 Sequencing (SRP001804)
239
326
+
Leu
CAA
[SRA]
>SRA1020790
SRR035083.165620
454 Sequencing (SRP001804)
239
152
-
Leu
CAA
[SRA]
>SRA1020809
SRR035083.167343
454 Sequencing (SRP001804)
150
237
+
Leu
CAA
[SRA]
>SRA1020934
SRR035083.187650
454 Sequencing (SRP001804)
319
232
-
Leu
CAA
[SRA]
>SRA1020960
SRR035083.190469
454 Sequencing (SRP001804)
288
201
-
Leu
CAA
[SRA]
>SRA1021008
SRR035083.197227
454 Sequencing (SRP001804)
145
232
+
Leu
CAA
[SRA]
>SRA1021061
SRR035083.204466
454 Sequencing (SRP001804)
112
25
-
Leu
CAA
[SRA]
>SRA1021267
SRR035083.233402
454 Sequencing (SRP001804)
159
72
-
Leu
CAA
[SRA]
>SRA1021412
SRR035083.255543
454 Sequencing (SRP001804)
160
247
+
Leu
CAA
[SRA]
>SRA1021435
SRR035083.258202
454 Sequencing (SRP001804)
118
205
+
Leu
CAA
[SRA]
>SRA1021466
SRR035083.262352
454 Sequencing (SRP001804)
380
467
+
Leu
CAA
[SRA]
>SRA1021494
SRR035083.265591
454 Sequencing (SRP001804)
118
205
+
Leu
CAA
[SRA]
>SRA1021507
SRR035083.267397
454 Sequencing (SRP001804)
431
344
-
Leu
CAA
[SRA]
>SRA1021516
SRR035083.268389
454 Sequencing (SRP001804)
234
321
+
Leu
CAA
[SRA]
>SRA1021550
SRR035083.272078
454 Sequencing (SRP001804)
385
298
-
Leu
CAA
[SRA]
>SRA1021575
SRR035083.275195
454 Sequencing (SRP001804)
66
153
+
Leu
CAA
[SRA]
>SRA1021631
SRR035083.283832
454 Sequencing (SRP001804)
159
72
-
Leu
CAA
[SRA]
>SRA1021648
SRR035083.287193
454 Sequencing (SRP001804)
145
232
+
Leu
CAA
[SRA]
>SRA1021727
SRR035083.297894
454 Sequencing (SRP001804)
112
25
-
Leu
CAA
[SRA]
>SRA1021796
SRR035083.311449
454 Sequencing (SRP001804)
236
323
+
Leu
CAA
[SRA]
>SRA1021816
SRR035083.313263
454 Sequencing (SRP001804)
169
82
-
Leu
CAA
[SRA]
>SRA1021912
SRR035083.327163
454 Sequencing (SRP001804)
51
138
+
Leu
CAA
[SRA]
>SRA1021933
SRR035083.329090
454 Sequencing (SRP001804)
242
155
-
Leu
CAA
[SRA]
>SRA1022045
SRR035083.344999
454 Sequencing (SRP001804)
70
157
+
Leu
CAA
[SRA]
>SRA1022086
SRR035083.350033
454 Sequencing (SRP001804)
424
337
-
Leu
CAA
[SRA]
>SRA1022139
SRR035083.358094
454 Sequencing (SRP001804)
298
385
+
Leu
CAA
[SRA]
>SRA1022191
SRR035083.366266
454 Sequencing (SRP001804)
292
379
+
Leu
CAA
[SRA]
>SRA1022225
SRR035083.370297
454 Sequencing (SRP001804)
351
438
+
Leu
CAA
[SRA]
>SRA1022311
SRR035083.387028
454 Sequencing (SRP001804)
168
255
+
Leu
CAA
[SRA]
>SRA1022352
SRR035083.394175
454 Sequencing (SRP001804)
130
217
+
Leu
CAA
[SRA]
>SRA1022362
SRR035083.396518
454 Sequencing (SRP001804)
111
198
+
Leu
CAA
[SRA]
>SRA1022573
SRR035083.426292
454 Sequencing (SRP001804)
39
126
+
Leu
CAA
[SRA]
>SRA1022656
SRR035083.438027
454 Sequencing (SRP001804)
127
40
-
Leu
CAA
[SRA]
>SRA1022718
SRR035083.446619
454 Sequencing (SRP001804)
156
69
-
Leu
CAA
[SRA]
>SRA1022724
SRR035083.448382
454 Sequencing (SRP001804)
305
392
+
Leu
CAA
[SRA]
>SRA1022885
SRR035083.477985
454 Sequencing (SRP001804)
304
391
+
Leu
CAA
[SRA]
>SRA1022948
SRR035083.493309
454 Sequencing (SRP001804)
148
235
+
Leu
CAA
[SRA]
>SRA1022986
SRR035083.500384
454 Sequencing (SRP001804)
371
284
-
Leu
CAA
[SRA]
>SRA1023029
SRR035083.507861
454 Sequencing (SRP001804)
286
199
-
Leu
CAA
[SRA]
>SRA1023054
SRR035083.512609
454 Sequencing (SRP001804)
52
139
+
Leu
CAA
[SRA]
>SRA1023057
SRR035083.512846
454 Sequencing (SRP001804)
152
65
-
Leu
CAA
[SRA]
>SRA1023092
SRR035083.518557
454 Sequencing (SRP001804)
107
194
+
Leu
CAA
[SRA]
>SRA1023099
SRR035083.519668
454 Sequencing (SRP001804)
112
25
-
Leu
CAA
[SRA]
>SRA1032716
SRR035088.86085
454 Sequencing (SRP001809)
20
107
+
Leu
CAA
[SRA]
>SRA1033094
SRR035088.171511
454 Sequencing (SRP001809)
3
90
+
Leu
CAA
[SRA]
>SRA1033274
SRR035088.211742
454 Sequencing (SRP001809)
114
201
+
Leu
CAA
[SRA]
>SRA1033364
SRR035088.235074
454 Sequencing (SRP001809)
118
31
-
Leu
CAA
[SRA]
>SRA1033517
SRR035088.276907
454 Sequencing (SRP001809)
292
205
-
Leu
CAA
[SRA]
>SRA1033990
SRR035088.435322
454 Sequencing (SRP001809)
114
201
+
Leu
CAA
[SRA]
>SRA1034827
SRR035089.181140
454 Sequencing (SRP001810)
118
31
-
Leu
CAA
[SRA]
>SRA1035543
SRR035089.327249
454 Sequencing (SRP001810)
195
282
+
Leu
CAA
[SRA]
>SRA1037015
SRR035090.59237
454 Sequencing (SRP001811)
169
256
+
Leu
CAA
[SRA]
>SRA1037077
SRR035090.70854
454 Sequencing (SRP001811)
3
90
+
Leu
CAA
[SRA]
>SRA1037237
SRR035090.99991
454 Sequencing (SRP001811)
140
227
+
Leu
CAA
[SRA]
>SRA1037327
SRR035090.115793
454 Sequencing (SRP001811)
140
227
+
Leu
CAA
[SRA]
>SRA1037377
SRR035090.125610
454 Sequencing (SRP001811)
171
84
-
Leu
CAA
[SRA]
>SRA1037399
SRR035090.128542
454 Sequencing (SRP001811)
159
246
+
Leu
CAA
[SRA]
>SRA1037400
SRR035090.128703
454 Sequencing (SRP001811)
3
90
+
Leu
CAA
[SRA]
>SRA1037777
SRR035090.192292
454 Sequencing (SRP001811)
164
77
-
Leu
CAA
[SRA]
>SRA1037958
SRR035090.226439
454 Sequencing (SRP001811)
3
90
+
Leu
CAA
[SRA]
>SRA1038011
SRR035090.233247
454 Sequencing (SRP001811)
4
91
+
Leu
CAA
[SRA]
>SRA1038059
SRR035090.240866
454 Sequencing (SRP001811)
481
394
-
Leu
CAA
[SRA]
>SRA1038102
SRR035090.245899
454 Sequencing (SRP001811)
86
-1
-
Leu
CAA
[SRA]
>SRA1038125
SRR035090.249666
454 Sequencing (SRP001811)
276
189
-
Leu
CAA
[SRA]
>SRA1038186
SRR035090.260433
454 Sequencing (SRP001811)
12
99
+
Leu
CAA
[SRA]
>SRA1038334
SRR035090.289166
454 Sequencing (SRP001811)
131
218
+
Leu
CAA
[SRA]
>SRA1038391
SRR035090.296397
454 Sequencing (SRP001811)
176
263
+
Leu
CAA
[SRA]
>SRA1038401
SRR035090.297580
454 Sequencing (SRP001811)
120
33
-
Leu
CAA
[SRA]
>SRA1038506
SRR035090.317631
454 Sequencing (SRP001811)
482
395
-
Leu
CAA
[SRA]
>SRA1038566
SRR035090.328222
454 Sequencing (SRP001811)
138
225
+
Leu
CAA
[SRA]
>SRA1038602
SRR035090.334702
454 Sequencing (SRP001811)
272
359
+
Leu
CAA
[SRA]
>SRA1038605
SRR035090.334997
454 Sequencing (SRP001811)
339
252
-
Leu
CAA
[SRA]
>SRA1038647
SRR035090.343201
454 Sequencing (SRP001811)
185
272
+
Leu
CAA
[SRA]
>SRA1038719
SRR035090.354389
454 Sequencing (SRP001811)
29
116
+
Leu
CAA
[SRA]
>SRA1038782
SRR035090.364541
454 Sequencing (SRP001811)
149
236
+
Leu
CAA
[SRA]
>SRA1038818
SRR035090.371946
454 Sequencing (SRP001811)
297
384
+
Leu
CAA
[SRA]
>SRA1038835
SRR035090.376122
454 Sequencing (SRP001811)
128
41
-
Leu
CAA
[SRA]
>SRA1039021
SRR035090.409096
454 Sequencing (SRP001811)
292
205
-
Leu
CAA
[SRA]
>SRA1039066
SRR035090.418593
454 Sequencing (SRP001811)
4
91
+
Leu
CAA
[SRA]
>SRA1039101
SRR035090.425600
454 Sequencing (SRP001811)
163
76
-
Leu
CAA
[SRA]
>SRA1039196
SRR035090.441130
454 Sequencing (SRP001811)
351
264
-
Leu
CAA
[SRA]
>SRA1039200
SRR035090.442416
454 Sequencing (SRP001811)
150
237
+
Leu
CAA
[SRA]
>SRA1039222
SRR035090.446718
454 Sequencing (SRP001811)
109
196
+
Leu
CAA
[SRA]
>SRA1039363
SRR035090.477818
454 Sequencing (SRP001811)
86
-1
-
Leu
CAA
[SRA]
>SRA1039369
SRR035090.479142
454 Sequencing (SRP001811)
365
278
-
Leu
CAA
[SRA]
>SRA1039481
SRR035090.500642
454 Sequencing (SRP001811)
245
332
+
Leu
CAA
[SRA]
>SRA1039488
SRR035090.501592
454 Sequencing (SRP001811)
306
393
+
Leu
CAA
[SRA]
>SRA1039516
SRR035090.507186
454 Sequencing (SRP001811)
252
339
+
Leu
CAA
[SRA]
>SRA1039518
SRR035090.507713
454 Sequencing (SRP001811)
92
5
-
Leu
CAA
[SRA]
>SRA1039549
SRR035090.514531
454 Sequencing (SRP001811)
9
96
+
Leu
CAA
[SRA]
>SRA1039665
SRR035090.539423
454 Sequencing (SRP001811)
288
375
+
Leu
CAA
[SRA]
>SRA1039718
SRR035090.553522
454 Sequencing (SRP001811)
266
179
-
Leu
CAA
[SRA]
>SRA1039732
SRR035090.555482
454 Sequencing (SRP001811)
122
209
+
Leu
CAA
[SRA]
>SRA1039764
SRR035090.563183
454 Sequencing (SRP001811)
245
158
-
Leu
CAA
[SRA]
>SRA1039793
SRR035090.571641
454 Sequencing (SRP001811)
278
191
-
Leu
CAA
[SRA]
>SRA1041329
SRR035091.228270
454 Sequencing (SRP001812)
253
166
-
Leu
CAA
[SRA]
>SRA1041380
SRR035091.235045
454 Sequencing (SRP001812)
544
457
-
Leu
CAA
[SRA]
>SRA1042367
SRR035091.378671
454 Sequencing (SRP001812)
190
103
-
Leu
CAA
[SRA]
>SRA1046449
SRR035093.308883
454 Sequencing (SRP001814)
111
24
-
Leu
CAA
[SRA]
>SRA1047532
SRR035093.568796
454 Sequencing (SRP001814)
97
184
+
Leu
CAA
[SRA]
>SRA1052823
SRR035098.281754
454 Sequencing (SRP001819)
173
260
+
Leu
CAA
[SRA]
>SRA1053962
SRR035099.17347
454 Sequencing (SRP001820)
366
453
+
Leu
CAA
[SRA]
>SRA1053991
SRR035099.26646
454 Sequencing (SRP001820)
29
116
+
Leu
CAA
[SRA]
>SRA1054112
SRR035099.59556
454 Sequencing (SRP001820)
345
258
-
Leu
CAA
[SRA]
>SRA1054134
SRR035099.66697
454 Sequencing (SRP001820)
266
353
+
Leu
CAA
[SRA]
>SRA1054186
SRR035099.79891
454 Sequencing (SRP001820)
248
161
-
Leu
CAA
[SRA]
>SRA1054201
SRR035099.81454
454 Sequencing (SRP001820)
151
64
-
Leu
CAA
[SRA]
>SRA1054245
SRR035099.91623
454 Sequencing (SRP001820)
39
126
+
Leu
CAA
[SRA]
>SRA1054291
SRR035099.100443
454 Sequencing (SRP001820)
338
425
+
Leu
CAA
[SRA]
Identical group No.93370 (4 seq.)
>WENV170622814
FUWD013121767
[FUWD] metagenome; unknown
168
255
+
Leu
CAA
[ENA]
¢þ
>WENV170631030
FUWD013335474
[FUWD] metagenome; unknown
168
255
+
Leu
CAA
[ENA]
¢þ
>SRA1020415
SRR035083.111322
454 Sequencing (SRP001804)
323
236
-
Leu
CAA
[SRA]
>SRA1054815
SRR035099.221034
454 Sequencing (SRP001820)
178
265
+
Leu
CAA
[SRA]
Identical group No.123085 (2 seq.)
>WENV170613497
FUWD012808801
[FUWD] metagenome; unknown
45
128
+
Leu
CAA
[ENA]
¢þ
>SRA1054229
SRR035099.87624
454 Sequencing (SRP001820)
145
62
-
Leu
CAA
[SRA]
Identical group No.123090 (1 seq.)
>SRA1054607
SRR035099.171906
454 Sequencing (SRP001820)
146
63
-
Leu
CAA
[SRA]
Identical group No.123093 (1 seq.)
>SRA1054753
SRR035099.206572
454 Sequencing (SRP001820)
111
27
-
Leu
CAA
[SRA]
Identical group No.160443 (1 seq.)
>SRA1054329
SRR035099.107827
454 Sequencing (SRP001820)
449
364
-
Leu
CAA
[SRA]
Identical group No.321189 (2 seq.)
>SRA1054409
SRR035099.127504
454 Sequencing (SRP001820)
25
102
+
Leu
CAA
[SRA]
>SRA1054536
SRR035099.157639
454 Sequencing (SRP001820)
192
269
+
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK