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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001820)
Anticodon = GAG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52746 (1 seq.)
>SRA1054203
SRR035099.82554
454 Sequencing (SRP001820)
419
330
-
Leu
GAG
[SRA]
Identical group No.114108 (11 seq.)
>W1711392220
MENJ01000012
Bacteroidota
Bacteroidetes bacterium GWA2_42_15 [MENJ]
17504
17420
-
Leu
GAG
[ENA]
¡û
>W1711392339
MENL01000193
Bacteroidota
Bacteroidetes bacterium GWB2_41_8 [MENL]
24434
24348
-
Leu
GAG
[ENA]
¡û
>W1711392912
MEOB01000017
Bacteroidota
Bacteroidetes bacterium GWE2_42_39 [MEOB]
366638
366554
-
Leu
GAG
[ENA]
¡û
>W1711393394
MEOO01000039
Bacteroidota
Bacteroidetes bacterium GWF2_42_66 [MEOO]
366619
366535
-
Leu
GAG
[ENA]
¡û
>W141022721
AJUM01000046
Bacteroidota
Alkaliflexus imshenetskii DSM 15055 [AJUM]
26591
26677
+
Leu
GAG
[ENA]
¡û
>WENV180297819
OBJA01092883
[OBJA] soil metagenome; sediment, water from around vicinity
578
662
+
Leu
GAG
[ENA]
¢þ
>WENV183664022
ORJL010338020
[ORJL] groundwater metagenome; groundwater
672
756
+
Leu
GAG
[ENA]
¢þ
>WENV170969718
MTKW01037395
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
132
218
+
Leu
GAG
[ENA]
¢þ
>WENV170975559
MTKZ01001271
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
34713
34627
-
Leu
GAG
[ENA]
¢þ
>WENV170975690
MTKZ01001863
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
18270
18356
+
Leu
GAG
[ENA]
¢þ
>SRA1054235
SRR035099.90325
454 Sequencing (SRP001820)
322
408
+
Leu
GAG
[SRA]
Identical group No.123089 (1 seq.)
>SRA1054595
SRR035099.169846
454 Sequencing (SRP001820)
143
59
-
Leu
GAG
[SRA]
Identical group No.160440 (7 seq.)
>WENV170622857
FUWD013123961
[FUWD] metagenome; unknown
307
222
-
Leu
GAG
[ENA]
¢þ
>WENV170631075
FUWD013337508
[FUWD] metagenome; unknown
307
222
-
Leu
GAG
[ENA]
¢þ
>SRA1033490
SRR035088.270930
454 Sequencing (SRP001809)
217
302
+
Leu
GAG
[SRA]
>SRA1039483
SRR035090.500702
454 Sequencing (SRP001811)
342
257
-
Leu
GAG
[SRA]
>SRA1054285
SRR035099.100073
454 Sequencing (SRP001820)
130
45
-
Leu
GAG
[SRA]
>SRA1054822
SRR035099.222703
454 Sequencing (SRP001820)
179
94
-
Leu
GAG
[SRA]
>C131010909
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
912808
912723
-
Leu
GAG
[Ensembl]
¡û
Identical group No.180230 (133 seq.)
>W1711167335
LVWG01000035
Chlorobiota
Pelodictyon luteolum [LVWG]
94119
94037
-
Leu
GAG
[ENA]
¡û
>C016757
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
1965207
1965126
-
Leu
GAG
[Ensembl]
¡û
>C018262
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1709637
1709556
-
Leu
GAG
[Ensembl]
¡û
>WENV183812125
PYLN01000153
[PYLN] freshwater metagenome; meromictic lake
4254
4336
+
Leu
GAG
[ENA]
¢þ
>WENV170613536
FUWD012813029
[FUWD] metagenome; unknown
28469
28551
+
Leu
GAG
[ENA]
¢þ
>WENV170613773
FUWD012819316
[FUWD] metagenome; unknown
1045
1127
+
Leu
GAG
[ENA]
¢þ
>W09103376
AAJD01000022
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
831
749
-
Leu
GAG
[ENA]
¡û
>SRA1016966
SRR035082.61612
454 Sequencing (SRP001803)
384
302
-
Leu
GAG
[SRA]
>SRA1019883
SRR035083.13066
454 Sequencing (SRP001804)
336
418
+
Leu
GAG
[SRA]
>SRA1019923
SRR035083.23315
454 Sequencing (SRP001804)
335
417
+
Leu
GAG
[SRA]
>SRA1019968
SRR035083.31643
454 Sequencing (SRP001804)
277
195
-
Leu
GAG
[SRA]
>SRA1019972
SRR035083.32773
454 Sequencing (SRP001804)
145
63
-
Leu
GAG
[SRA]
>SRA1020038
SRR035083.45500
454 Sequencing (SRP001804)
293
375
+
Leu
GAG
[SRA]
>SRA1020040
SRR035083.46039
454 Sequencing (SRP001804)
193
275
+
Leu
GAG
[SRA]
>SRA1020093
SRR035083.57011
454 Sequencing (SRP001804)
296
378
+
Leu
GAG
[SRA]
>SRA1020099
SRR035083.57314
454 Sequencing (SRP001804)
195
277
+
Leu
GAG
[SRA]
>SRA1020153
SRR035083.64028
454 Sequencing (SRP001804)
296
378
+
Leu
GAG
[SRA]
>SRA1020157
SRR035083.64520
454 Sequencing (SRP001804)
109
27
-
Leu
GAG
[SRA]
>SRA1020284
SRR035083.89765
454 Sequencing (SRP001804)
273
355
+
Leu
GAG
[SRA]
>SRA1020324
SRR035083.96913
454 Sequencing (SRP001804)
276
194
-
Leu
GAG
[SRA]
>SRA1020336
SRR035083.98452
454 Sequencing (SRP001804)
111
193
+
Leu
GAG
[SRA]
>SRA1020482
SRR035083.121352
454 Sequencing (SRP001804)
285
203
-
Leu
GAG
[SRA]
>SRA1020543
SRR035083.131813
454 Sequencing (SRP001804)
211
293
+
Leu
GAG
[SRA]
>SRA1020673
SRR035083.150614
454 Sequencing (SRP001804)
268
186
-
Leu
GAG
[SRA]
>SRA1020710
SRR035083.154458
454 Sequencing (SRP001804)
300
382
+
Leu
GAG
[SRA]
>SRA1020926
SRR035083.186494
454 Sequencing (SRP001804)
220
138
-
Leu
GAG
[SRA]
>SRA1021050
SRR035083.203366
454 Sequencing (SRP001804)
146
64
-
Leu
GAG
[SRA]
>SRA1021207
SRR035083.223431
454 Sequencing (SRP001804)
369
287
-
Leu
GAG
[SRA]
>SRA1021221
SRR035083.225854
454 Sequencing (SRP001804)
333
251
-
Leu
GAG
[SRA]
>SRA1021240
SRR035083.227774
454 Sequencing (SRP001804)
41
123
+
Leu
GAG
[SRA]
>SRA1021334
SRR035083.244425
454 Sequencing (SRP001804)
182
264
+
Leu
GAG
[SRA]
>SRA1021352
SRR035083.247187
454 Sequencing (SRP001804)
220
138
-
Leu
GAG
[SRA]
>SRA1021382
SRR035083.253009
454 Sequencing (SRP001804)
285
203
-
Leu
GAG
[SRA]
>SRA1021475
SRR035083.263324
454 Sequencing (SRP001804)
285
203
-
Leu
GAG
[SRA]
>SRA1021490
SRR035083.265174
454 Sequencing (SRP001804)
285
203
-
Leu
GAG
[SRA]
>SRA1021552
SRR035083.272311
454 Sequencing (SRP001804)
316
234
-
Leu
GAG
[SRA]
>SRA1021784
SRR035083.308521
454 Sequencing (SRP001804)
60
142
+
Leu
GAG
[SRA]
>SRA1021906
SRR035083.326911
454 Sequencing (SRP001804)
215
297
+
Leu
GAG
[SRA]
>SRA1021925
SRR035083.328612
454 Sequencing (SRP001804)
238
156
-
Leu
GAG
[SRA]
>SRA1021946
SRR035083.330854
454 Sequencing (SRP001804)
63
145
+
Leu
GAG
[SRA]
>SRA1021972
SRR035083.333027
454 Sequencing (SRP001804)
60
142
+
Leu
GAG
[SRA]
>SRA1022035
SRR035083.342640
454 Sequencing (SRP001804)
182
264
+
Leu
GAG
[SRA]
>SRA1022076
SRR035083.349287
454 Sequencing (SRP001804)
172
90
-
Leu
GAG
[SRA]
>SRA1022103
SRR035083.354116
454 Sequencing (SRP001804)
427
345
-
Leu
GAG
[SRA]
>SRA1022143
SRR035083.359085
454 Sequencing (SRP001804)
405
487
+
Leu
GAG
[SRA]
>SRA1022174
SRR035083.363692
454 Sequencing (SRP001804)
285
203
-
Leu
GAG
[SRA]
>SRA1022180
SRR035083.364629
454 Sequencing (SRP001804)
421
339
-
Leu
GAG
[SRA]
>SRA1022187
SRR035083.366138
454 Sequencing (SRP001804)
47
129
+
Leu
GAG
[SRA]
>SRA1022217
SRR035083.369242
454 Sequencing (SRP001804)
112
194
+
Leu
GAG
[SRA]
>SRA1022238
SRR035083.373120
454 Sequencing (SRP001804)
265
183
-
Leu
GAG
[SRA]
>SRA1022264
SRR035083.378561
454 Sequencing (SRP001804)
208
126
-
Leu
GAG
[SRA]
>SRA1022272
SRR035083.379379
454 Sequencing (SRP001804)
335
417
+
Leu
GAG
[SRA]
>SRA1022395
SRR035083.399842
454 Sequencing (SRP001804)
26
108
+
Leu
GAG
[SRA]
>SRA1022433
SRR035083.404784
454 Sequencing (SRP001804)
278
196
-
Leu
GAG
[SRA]
>SRA1022495
SRR035083.413555
454 Sequencing (SRP001804)
321
239
-
Leu
GAG
[SRA]
>SRA1022513
SRR035083.417563
454 Sequencing (SRP001804)
299
381
+
Leu
GAG
[SRA]
>SRA1022555
SRR035083.423546
454 Sequencing (SRP001804)
177
95
-
Leu
GAG
[SRA]
>SRA1022610
SRR035083.432147
454 Sequencing (SRP001804)
324
242
-
Leu
GAG
[SRA]
>SRA1022676
SRR035083.440478
454 Sequencing (SRP001804)
346
264
-
Leu
GAG
[SRA]
>SRA1022700
SRR035083.443963
454 Sequencing (SRP001804)
82
164
+
Leu
GAG
[SRA]
>SRA1022735
SRR035083.450538
454 Sequencing (SRP001804)
418
336
-
Leu
GAG
[SRA]
>SRA1022766
SRR035083.456630
454 Sequencing (SRP001804)
10
92
+
Leu
GAG
[SRA]
>SRA1022853
SRR035083.473742
454 Sequencing (SRP001804)
37
119
+
Leu
GAG
[SRA]
>SRA1022897
SRR035083.481353
454 Sequencing (SRP001804)
286
204
-
Leu
GAG
[SRA]
>SRA1022915
SRR035083.485726
454 Sequencing (SRP001804)
10
92
+
Leu
GAG
[SRA]
>SRA1022970
SRR035083.497548
454 Sequencing (SRP001804)
350
268
-
Leu
GAG
[SRA]
>SRA1023046
SRR035083.511820
454 Sequencing (SRP001804)
143
225
+
Leu
GAG
[SRA]
>SRA1023101
SRR035083.519722
454 Sequencing (SRP001804)
211
293
+
Leu
GAG
[SRA]
>SRA1032446
SRR035088.11319
454 Sequencing (SRP001809)
177
95
-
Leu
GAG
[SRA]
>SRA1032783
SRR035088.102627
454 Sequencing (SRP001809)
289
207
-
Leu
GAG
[SRA]
>SRA1033093
SRR035088.171443
454 Sequencing (SRP001809)
334
252
-
Leu
GAG
[SRA]
>SRA1033974
SRR035088.427630
454 Sequencing (SRP001809)
100
18
-
Leu
GAG
[SRA]
>SRA1034700
SRR035089.155639
454 Sequencing (SRP001810)
180
98
-
Leu
GAG
[SRA]
>SRA1035007
SRR035089.217438
454 Sequencing (SRP001810)
117
35
-
Leu
GAG
[SRA]
>SRA1035096
SRR035089.237058
454 Sequencing (SRP001810)
324
406
+
Leu
GAG
[SRA]
>SRA1035627
SRR035089.342769
454 Sequencing (SRP001810)
181
99
-
Leu
GAG
[SRA]
>SRA1036886
SRR035090.31537
454 Sequencing (SRP001811)
120
38
-
Leu
GAG
[SRA]
>SRA1037218
SRR035090.94331
454 Sequencing (SRP001811)
368
286
-
Leu
GAG
[SRA]
>SRA1037242
SRR035090.100964
454 Sequencing (SRP001811)
33
115
+
Leu
GAG
[SRA]
>SRA1037251
SRR035090.102357
454 Sequencing (SRP001811)
347
429
+
Leu
GAG
[SRA]
>SRA1037382
SRR035090.126236
454 Sequencing (SRP001811)
195
277
+
Leu
GAG
[SRA]
>SRA1037461
SRR035090.137997
454 Sequencing (SRP001811)
195
277
+
Leu
GAG
[SRA]
>SRA1037539
SRR035090.150147
454 Sequencing (SRP001811)
154
72
-
Leu
GAG
[SRA]
>SRA1037587
SRR035090.158601
454 Sequencing (SRP001811)
351
433
+
Leu
GAG
[SRA]
>SRA1037655
SRR035090.169930
454 Sequencing (SRP001811)
310
392
+
Leu
GAG
[SRA]
>SRA1037658
SRR035090.170412
454 Sequencing (SRP001811)
405
323
-
Leu
GAG
[SRA]
>SRA1037692
SRR035090.175210
454 Sequencing (SRP001811)
33
115
+
Leu
GAG
[SRA]
>SRA1037769
SRR035090.191683
454 Sequencing (SRP001811)
255
173
-
Leu
GAG
[SRA]
>SRA1037884
SRR035090.211724
454 Sequencing (SRP001811)
90
172
+
Leu
GAG
[SRA]
>SRA1037898
SRR035090.215759
454 Sequencing (SRP001811)
275
357
+
Leu
GAG
[SRA]
>SRA1037910
SRR035090.216909
454 Sequencing (SRP001811)
350
432
+
Leu
GAG
[SRA]
>SRA1037946
SRR035090.224066
454 Sequencing (SRP001811)
248
166
-
Leu
GAG
[SRA]
>SRA1038097
SRR035090.244572
454 Sequencing (SRP001811)
77
159
+
Leu
GAG
[SRA]
>SRA1038144
SRR035090.253742
454 Sequencing (SRP001811)
142
60
-
Leu
GAG
[SRA]
>SRA1038219
SRR035090.266838
454 Sequencing (SRP001811)
407
325
-
Leu
GAG
[SRA]
>SRA1038229
SRR035090.268523
454 Sequencing (SRP001811)
280
362
+
Leu
GAG
[SRA]
>SRA1038397
SRR035090.297321
454 Sequencing (SRP001811)
230
148
-
Leu
GAG
[SRA]
>SRA1038405
SRR035090.298479
454 Sequencing (SRP001811)
248
166
-
Leu
GAG
[SRA]
>SRA1038528
SRR035090.320703
454 Sequencing (SRP001811)
180
262
+
Leu
GAG
[SRA]
>SRA1038573
SRR035090.329452
454 Sequencing (SRP001811)
200
118
-
Leu
GAG
[SRA]
>SRA1038585
SRR035090.331742
454 Sequencing (SRP001811)
238
156
-
Leu
GAG
[SRA]
>SRA1038757
SRR035090.360709
454 Sequencing (SRP001811)
77
159
+
Leu
GAG
[SRA]
>SRA1038773
SRR035090.363215
454 Sequencing (SRP001811)
231
149
-
Leu
GAG
[SRA]
>SRA1038832
SRR035090.375949
454 Sequencing (SRP001811)
161
79
-
Leu
GAG
[SRA]
>SRA1038845
SRR035090.379026
454 Sequencing (SRP001811)
157
239
+
Leu
GAG
[SRA]
>SRA1038903
SRR035090.391365
454 Sequencing (SRP001811)
207
125
-
Leu
GAG
[SRA]
>SRA1038923
SRR035090.395377
454 Sequencing (SRP001811)
161
79
-
Leu
GAG
[SRA]
>SRA1038925
SRR035090.395717
454 Sequencing (SRP001811)
144
226
+
Leu
GAG
[SRA]
>SRA1039013
SRR035090.407458
454 Sequencing (SRP001811)
361
279
-
Leu
GAG
[SRA]
>SRA1039172
SRR035090.436892
454 Sequencing (SRP001811)
119
37
-
Leu
GAG
[SRA]
>SRA1039293
SRR035090.459946
454 Sequencing (SRP001811)
164
82
-
Leu
GAG
[SRA]
>SRA1039316
SRR035090.465504
454 Sequencing (SRP001811)
207
125
-
Leu
GAG
[SRA]
>SRA1039562
SRR035090.516930
454 Sequencing (SRP001811)
230
148
-
Leu
GAG
[SRA]
>SRA1039624
SRR035090.531910
454 Sequencing (SRP001811)
438
356
-
Leu
GAG
[SRA]
>SRA1039650
SRR035090.535693
454 Sequencing (SRP001811)
170
252
+
Leu
GAG
[SRA]
>SRA1039725
SRR035090.554090
454 Sequencing (SRP001811)
222
304
+
Leu
GAG
[SRA]
>SRA1039862
SRR035090.585650
454 Sequencing (SRP001811)
120
38
-
Leu
GAG
[SRA]
>SRA1039926
SRR035090.605121
454 Sequencing (SRP001811)
211
129
-
Leu
GAG
[SRA]
>SRA1041796
SRR035091.296479
454 Sequencing (SRP001812)
291
373
+
Leu
GAG
[SRA]
>SRA1041839
SRR035091.303482
454 Sequencing (SRP001812)
94
12
-
Leu
GAG
[SRA]
>SRA1042206
SRR035091.354969
454 Sequencing (SRP001812)
68
150
+
Leu
GAG
[SRA]
>SRA1051929
SRR035098.106480
454 Sequencing (SRP001819)
351
269
-
Leu
GAG
[SRA]
>SRA1053981
SRR035099.25175
454 Sequencing (SRP001820)
289
207
-
Leu
GAG
[SRA]
>SRA1053988
SRR035099.26555
454 Sequencing (SRP001820)
423
504
+
Leu
GAG
[SRA]
>SRA1054146
SRR035099.69803
454 Sequencing (SRP001820)
319
401
+
Leu
GAG
[SRA]
>SRA1054352
SRR035099.114707
454 Sequencing (SRP001820)
264
182
-
Leu
GAG
[SRA]
>SRA1054470
SRR035099.138983
454 Sequencing (SRP001820)
446
364
-
Leu
GAG
[SRA]
>SRA1054512
SRR035099.150241
454 Sequencing (SRP001820)
287
369
+
Leu
GAG
[SRA]
>SRA1054543
SRR035099.158870
454 Sequencing (SRP001820)
354
436
+
Leu
GAG
[SRA]
>SRA1054767
SRR035099.208392
454 Sequencing (SRP001820)
122
204
+
Leu
GAG
[SRA]
>SRA1054804
SRR035099.217673
454 Sequencing (SRP001820)
43
125
+
Leu
GAG
[SRA]
>SRA1054852
SRR035099.231543
454 Sequencing (SRP001820)
131
49
-
Leu
GAG
[SRA]
>W1610977666
LVWG01000035
Chlorobiota
Pelodictyon luteolum [LVWG]
94119
94037
-
Leu
GAG
[ENA]
¡û
Identical group No.190289 (1 seq.)
>SRA1054869
SRR035099.239222
454 Sequencing (SRP001820)
91
6
-
Leu
GAG
[SRA]
Identical group No.190290 (1 seq.)
>SRA1054763
SRR035099.208236
454 Sequencing (SRP001820)
409
327
-
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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