This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001820)
Anticodon = GCT
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9240 (5 seq.)
>WENV170608007
FUWD010882240
[FUWD] metagenome; unknown
446
353
-
Ser
GCT
[ENA]
¢þ
>SRA1039406
SRR035090.485024
454 Sequencing (SRP001811)
27
120
+
Ser
GCT
[SRA]
>SRA1054310
SRR035099.103887
454 Sequencing (SRP001820)
246
339
+
Ser
GCT
[SRA]
>W10123444
ADZZ01000416
Unclassified
delta proteobacterium NaphS2 [ADZZ]
10833
10740
-
Ser
GCT
[ENA]
¡û
>W11130242
ADZZ01000416
Unclassified
delta proteobacterium NaphS2 [ADZZ]
10833
10740
-
Ser
GCT
[ENA]
¡û
Identical group No.13442 (14 seq.)
>SRA1020334
SRR035083.98303
454 Sequencing (SRP001804)
114
22
-
Ser
GCT
[SRA]
>SRA1020512
SRR035083.127693
454 Sequencing (SRP001804)
112
20
-
Ser
GCT
[SRA]
>SRA1020836
SRR035083.171342
454 Sequencing (SRP001804)
456
364
-
Ser
GCT
[SRA]
>SRA1021244
SRR035083.227941
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1021288
SRR035083.237016
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1021499
SRR035083.266198
454 Sequencing (SRP001804)
112
20
-
Ser
GCT
[SRA]
>SRA1021954
SRR035083.331676
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1022119
SRR035083.355684
454 Sequencing (SRP001804)
428
336
-
Ser
GCT
[SRA]
>SRA1022564
SRR035083.424735
454 Sequencing (SRP001804)
173
265
+
Ser
GCT
[SRA]
>SRA1031978
SRR035087.524255
454 Sequencing (SRP001808)
262
170
-
Ser
GCT
[SRA]
>SRA1037816
SRR035090.200872
454 Sequencing (SRP001811)
150
58
-
Ser
GCT
[SRA]
>SRA1054168
SRR035099.74429
454 Sequencing (SRP001820)
329
237
-
Ser
GCT
[SRA]
>SRA1054199
SRR035099.81380
454 Sequencing (SRP001820)
329
237
-
Ser
GCT
[SRA]
>SRA1054559
SRR035099.163635
454 Sequencing (SRP001820)
380
288
-
Ser
GCT
[SRA]
Identical group No.14310 (3 seq.)
>WENV170612954
FUWD012762375
[FUWD] metagenome; unknown
103
11
-
Ser
GCT
[ENA]
¢þ
>SRA1054334
SRR035099.108232
454 Sequencing (SRP001820)
241
149
-
Ser
GCT
[SRA]
>SRA1054505
SRR035099.148292
454 Sequencing (SRP001820)
237
329
+
Ser
GCT
[SRA]
Identical group No.14311 (1 seq.)
>SRA1054349
SRR035099.113918
454 Sequencing (SRP001820)
354
262
-
Ser
GCT
[SRA]
Identical group No.14314 (2 seq.)
>WENV170608235
FUWD010905409
[FUWD] metagenome; unknown
404
312
-
Ser
GCT
[ENA]
¢þ
>SRA1054500
SRR035099.147145
454 Sequencing (SRP001820)
43
135
+
Ser
GCT
[SRA]
Identical group No.22549 (1 seq.)
>SRA1053997
SRR035099.28665
454 Sequencing (SRP001820)
541
450
-
Ser
GCT
[SRA]
Identical group No.22551 (1 seq.)
>SRA1054174
SRR035099.76210
454 Sequencing (SRP001820)
314
223
-
Ser
GCT
[SRA]
Identical group No.22553 (1 seq.)
>SRA1054367
SRR035099.116351
454 Sequencing (SRP001820)
100
191
+
Ser
GCT
[SRA]
Identical group No.22554 (5 seq.)
>WENV170605239
FUWD010461093
[FUWD] metagenome; unknown
116
206
+
Ser
GCT
[ENA]
¢þ
>SRA1050535
SRR035095.285621
454 Sequencing (SRP001816)
274
184
-
Ser
GCT
[SRA]
>SRA1050571
SRR035095.295299
454 Sequencing (SRP001816)
274
184
-
Ser
GCT
[SRA]
>SRA1054468
SRR035099.138759
454 Sequencing (SRP001820)
326
236
-
Ser
GCT
[SRA]
>SRA1054830
SRR035099.226115
454 Sequencing (SRP001820)
48
138
+
Ser
GCT
[SRA]
Identical group No.22555 (1 seq.)
>SRA1054537
SRR035099.158199
454 Sequencing (SRP001820)
233
142
-
Ser
GCT
[SRA]
Identical group No.52749 (3 seq.)
>WENV170611770
FUWD012391530
[FUWD] metagenome; unknown
6
95
+
Ser
GCT
[ENA]
¢þ
>SRA1023005
SRR035083.503531
454 Sequencing (SRP001804)
6
95
+
Ser
GCT
[SRA]
>SRA1054527
SRR035099.156096
454 Sequencing (SRP001820)
267
356
+
Ser
GCT
[SRA]
Identical group No.52751 (4 seq.)
>WENV170618627
FUWD012979166
[FUWD] metagenome; unknown
91
2
-
Ser
GCT
[ENA]
¢þ
>SRA1042562
SRR035091.409178
454 Sequencing (SRP001812)
7
96
+
Ser
GCT
[SRA]
>SRA1049137
SRR035095.26821
454 Sequencing (SRP001816)
366
277
-
Ser
GCT
[SRA]
>SRA1054656
SRR035099.182536
454 Sequencing (SRP001820)
249
338
+
Ser
GCT
[SRA]
Identical group No.190282 (1 seq.)
>SRA1054270
SRR035099.96546
454 Sequencing (SRP001820)
334
417
+
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK