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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001820)
Anticodon = GTT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272937 (14 seq.)
>W1710995812
LQAQ01000093
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
316455
316381
-
Asn
GTT
[ENA]
¡û
>WENV181324479
OFLE01024271
[OFLE] marine metagenome; sea ice
257
331
+
Asn
GTT
[ENA]
¢þ
>WENV183615910
OOEC01003349
[OOEC] marine metagenome; sea ice
762
836
+
Asn
GTT
[ENA]
¢þ
>WENV183621250
OOFT01030983
[OOFT] marine metagenome; sea ice
478
404
-
Asn
GTT
[ENA]
¢þ
>WENV183628857
OOGO01042291
[OOGO] marine metagenome; sea ice
224
150
-
Asn
GTT
[ENA]
¢þ
>C181113298
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
1121925
1121851
-
Asn
GTT
-
¡û
>SRA1032986
SRR035088.144448
454 Sequencing (SRP001809)
193
269
+
Asn
GTT
[SRA]
>SRA1036662
SRR035089.575249
454 Sequencing (SRP001810)
182
260
+
Asn
GTT
[SRA]
>SRA1054856
SRR035099.236003
454 Sequencing (SRP001820)
194
120
-
Asn
GTT
[SRA]
>W1511359618
JRYR01000015
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
190225
190149
-
Asn
GTT
[ENA]
¡û
>W1511359620
JRYR01000015
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
190023
189947
-
Asn
GTT
[ENA]
¡û
>W1511393391
JTAM01000004
Bacteroidota
Flammeovirga sp. OC4 [JTAM]
178245
178171
-
Asn
GTT
[ENA]
¡û
>C161002915
CP003560
Bacteroidota
Flammeovirga sp. MY04 [CP003560, CP003561]
3469940
3470016
+
Asn
GTT
[Ensembl]
¡û
>W1610850469
LQAQ01000093
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
316455
316381
-
Asn
GTT
[ENA]
¡û
Identical group No.321156 (4 seq.)
>WENV170607787
FUWD010855984
[FUWD] metagenome; unknown
276
200
-
Asn
GTT
[ENA]
¢þ
>SRA1017034
SRR035082.70195
454 Sequencing (SRP001803)
169
93
-
Asn
GTT
[SRA]
>SRA1022821
SRR035083.467427
454 Sequencing (SRP001804)
422
346
-
Asn
GTT
[SRA]
>SRA1054021
SRR035099.36013
454 Sequencing (SRP001820)
228
152
-
Asn
GTT
[SRA]
Identical group No.484442 (6 seq.)
>WENV170626235
FUWD013217207
[FUWD] metagenome; unknown
807
879
+
Asn
GTT
[ENA]
¢þ
>SRA1031474
SRR035087.436296
454 Sequencing (SRP001808)
77
149
+
Asn
GTT
[SRA]
>SRA1053944
SRR035099.11129
454 Sequencing (SRP001820)
278
206
-
Asn
GTT
[SRA]
>SRA1054064
SRR035099.46962
454 Sequencing (SRP001820)
251
323
+
Asn
GTT
[SRA]
>SRA1054123
SRR035099.64035
454 Sequencing (SRP001820)
306
378
+
Asn
GTT
[SRA]
>SRA1054253
SRR035099.92577
454 Sequencing (SRP001820)
364
436
+
Asn
GTT
[SRA]
Identical group No.484486 (10 seq.)
>WENV170619890
FUWD013022584
[FUWD] metagenome; unknown
9692
9767
+
Asn
GTT
[ENA]
¢þ
>WENV170628010
FUWD013240735
[FUWD] metagenome; unknown
9692
9767
+
Asn
GTT
[ENA]
¢þ
>SRA1020122
SRR035083.59598
454 Sequencing (SRP001804)
454
528
+
Asn
GTT
[SRA]
>SRA1020354
SRR035083.101182
454 Sequencing (SRP001804)
315
240
-
Asn
GTT
[SRA]
>SRA1021340
SRR035083.245619
454 Sequencing (SRP001804)
250
325
+
Asn
GTT
[SRA]
>SRA1031760
SRR035087.482911
454 Sequencing (SRP001808)
297
370
+
Asn
GTT
[SRA]
>SRA1038868
SRR035090.384732
454 Sequencing (SRP001811)
250
325
+
Asn
GTT
[SRA]
>SRA1039204
SRR035090.443145
454 Sequencing (SRP001811)
277
202
-
Asn
GTT
[SRA]
>SRA1039570
SRR035090.517896
454 Sequencing (SRP001811)
98
173
+
Asn
GTT
[SRA]
>SRA1054453
SRR035099.135243
454 Sequencing (SRP001820)
164
89
-
Asn
GTT
[SRA]
Identical group No.507034 (1 seq.)
>SRA1054454
SRR035099.135377
454 Sequencing (SRP001820)
22
97
+
Asn
GTT
[SRA]
Identical group No.507039 (3 seq.)
>WENV170600609
FUWD010135095
[FUWD] metagenome; unknown
351
276
-
Asn
GTT
[ENA]
¢þ
>SRA1050226
SRR035095.216112
454 Sequencing (SRP001816)
357
282
-
Asn
GTT
[SRA]
>SRA1054526
SRR035099.155895
454 Sequencing (SRP001820)
468
393
-
Asn
GTT
[SRA]
Identical group No.507044 (2 seq.)
>WENV170613483
FUWD012808142
[FUWD] metagenome; unknown
118
193
+
Asn
GTT
[ENA]
¢þ
>SRA1054589
SRR035099.169500
454 Sequencing (SRP001820)
457
532
+
Asn
GTT
[SRA]
Identical group No.507063 (4 seq.)
>WENV170570826
FLOH01000028
[FLOH] marine metagenome; water
463972
464047
+
Asn
GTT
[ENA]
¢þ
>WENV170612966
FUWD012767470
[FUWD] metagenome; unknown
21
96
+
Asn
GTT
[ENA]
¢þ
>WENV170647459
JQIA01028466
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
67
142
+
Asn
GTT
[ENA]
¢þ
>SRA1054849
SRR035099.230025
454 Sequencing (SRP001820)
38
113
+
Asn
GTT
[SRA]
Identical group No.654615 (105 seq.)
>WENV170619430
FUWD013014054
[FUWD] metagenome; unknown
25360
25286
-
Asn
GTT
[ENA]
¢þ
>SRA1016765
SRR035082.22932
454 Sequencing (SRP001803)
192
266
+
Asn
GTT
[SRA]
>SRA1017767
SRR035082.193095
454 Sequencing (SRP001803)
235
309
+
Asn
GTT
[SRA]
>SRA1018916
SRR035082.369903
454 Sequencing (SRP001803)
40
114
+
Asn
GTT
[SRA]
>SRA1019894
SRR035083.17240
454 Sequencing (SRP001804)
28
102
+
Asn
GTT
[SRA]
>SRA1019987
SRR035083.36931
454 Sequencing (SRP001804)
327
253
-
Asn
GTT
[SRA]
>SRA1020006
SRR035083.40195
454 Sequencing (SRP001804)
379
305
-
Asn
GTT
[SRA]
>SRA1020010
SRR035083.40872
454 Sequencing (SRP001804)
120
194
+
Asn
GTT
[SRA]
>SRA1020075
SRR035083.54098
454 Sequencing (SRP001804)
401
474
+
Asn
GTT
[SRA]
>SRA1020127
SRR035083.60771
454 Sequencing (SRP001804)
352
278
-
Asn
GTT
[SRA]
>SRA1020213
SRR035083.75322
454 Sequencing (SRP001804)
368
294
-
Asn
GTT
[SRA]
>SRA1020221
SRR035083.76209
454 Sequencing (SRP001804)
192
118
-
Asn
GTT
[SRA]
>SRA1020251
SRR035083.82970
454 Sequencing (SRP001804)
357
283
-
Asn
GTT
[SRA]
>SRA1020423
SRR035083.112641
454 Sequencing (SRP001804)
316
390
+
Asn
GTT
[SRA]
>SRA1020437
SRR035083.115567
454 Sequencing (SRP001804)
255
329
+
Asn
GTT
[SRA]
>SRA1020498
SRR035083.123575
454 Sequencing (SRP001804)
162
88
-
Asn
GTT
[SRA]
>SRA1020500
SRR035083.124595
454 Sequencing (SRP001804)
55
129
+
Asn
GTT
[SRA]
>SRA1020660
SRR035083.148297
454 Sequencing (SRP001804)
282
208
-
Asn
GTT
[SRA]
>SRA1020698
SRR035083.153537
454 Sequencing (SRP001804)
406
332
-
Asn
GTT
[SRA]
>SRA1020879
SRR035083.177479
454 Sequencing (SRP001804)
154
228
+
Asn
GTT
[SRA]
>SRA1020881
SRR035083.178395
454 Sequencing (SRP001804)
407
333
-
Asn
GTT
[SRA]
>SRA1021034
SRR035083.200825
454 Sequencing (SRP001804)
369
295
-
Asn
GTT
[SRA]
>SRA1021062
SRR035083.204589
454 Sequencing (SRP001804)
55
129
+
Asn
GTT
[SRA]
>SRA1021147
SRR035083.214712
454 Sequencing (SRP001804)
68
142
+
Asn
GTT
[SRA]
>SRA1021149
SRR035083.215003
454 Sequencing (SRP001804)
12
86
+
Asn
GTT
[SRA]
>SRA1021153
SRR035083.216386
454 Sequencing (SRP001804)
346
420
+
Asn
GTT
[SRA]
>SRA1021254
SRR035083.229848
454 Sequencing (SRP001804)
281
207
-
Asn
GTT
[SRA]
>SRA1021283
SRR035083.236057
454 Sequencing (SRP001804)
174
100
-
Asn
GTT
[SRA]
>SRA1021379
SRR035083.252964
454 Sequencing (SRP001804)
283
209
-
Asn
GTT
[SRA]
>SRA1021414
SRR035083.255761
454 Sequencing (SRP001804)
330
256
-
Asn
GTT
[SRA]
>SRA1021500
SRR035083.266380
454 Sequencing (SRP001804)
175
249
+
Asn
GTT
[SRA]
>SRA1021695
SRR035083.293044
454 Sequencing (SRP001804)
281
207
-
Asn
GTT
[SRA]
>SRA1021760
SRR035083.304754
454 Sequencing (SRP001804)
224
150
-
Asn
GTT
[SRA]
>SRA1021790
SRR035083.310012
454 Sequencing (SRP001804)
155
229
+
Asn
GTT
[SRA]
>SRA1021851
SRR035083.317583
454 Sequencing (SRP001804)
289
215
-
Asn
GTT
[SRA]
>SRA1021973
SRR035083.333172
454 Sequencing (SRP001804)
28
102
+
Asn
GTT
[SRA]
>SRA1022049
SRR035083.345630
454 Sequencing (SRP001804)
174
100
-
Asn
GTT
[SRA]
>SRA1022226
SRR035083.371020
454 Sequencing (SRP001804)
225
151
-
Asn
GTT
[SRA]
>SRA1022237
SRR035083.373067
454 Sequencing (SRP001804)
169
95
-
Asn
GTT
[SRA]
>SRA1022254
SRR035083.375310
454 Sequencing (SRP001804)
312
238
-
Asn
GTT
[SRA]
>SRA1022356
SRR035083.395664
454 Sequencing (SRP001804)
67
141
+
Asn
GTT
[SRA]
>SRA1022386
SRR035083.398903
454 Sequencing (SRP001804)
135
209
+
Asn
GTT
[SRA]
>SRA1022515
SRR035083.418617
454 Sequencing (SRP001804)
219
145
-
Asn
GTT
[SRA]
>SRA1022529
SRR035083.421433
454 Sequencing (SRP001804)
204
130
-
Asn
GTT
[SRA]
>SRA1022635
SRR035083.435642
454 Sequencing (SRP001804)
46
120
+
Asn
GTT
[SRA]
>SRA1022688
SRR035083.442865
454 Sequencing (SRP001804)
13
87
+
Asn
GTT
[SRA]
>SRA1022928
SRR035083.489030
454 Sequencing (SRP001804)
34
108
+
Asn
GTT
[SRA]
>SRA1022953
SRR035083.493986
454 Sequencing (SRP001804)
28
102
+
Asn
GTT
[SRA]
>SRA1022962
SRR035083.495100
454 Sequencing (SRP001804)
286
212
-
Asn
GTT
[SRA]
>SRA1022972
SRR035083.498232
454 Sequencing (SRP001804)
225
299
+
Asn
GTT
[SRA]
>SRA1033125
SRR035088.179554
454 Sequencing (SRP001809)
263
189
-
Asn
GTT
[SRA]
>SRA1033449
SRR035088.259876
454 Sequencing (SRP001809)
194
120
-
Asn
GTT
[SRA]
>SRA1033531
SRR035088.280315
454 Sequencing (SRP001809)
36
110
+
Asn
GTT
[SRA]
>SRA1036291
SRR035089.488383
454 Sequencing (SRP001810)
256
330
+
Asn
GTT
[SRA]
>SRA1036746
SRR035089.603262
454 Sequencing (SRP001810)
391
317
-
Asn
GTT
[SRA]
>SRA1036840
SRR035090.21390
454 Sequencing (SRP001811)
221
295
+
Asn
GTT
[SRA]
>SRA1036841
SRR035090.21906
454 Sequencing (SRP001811)
75
1
-
Asn
GTT
[SRA]
>SRA1036859
SRR035090.26584
454 Sequencing (SRP001811)
75
1
-
Asn
GTT
[SRA]
>SRA1036883
SRR035090.31253
454 Sequencing (SRP001811)
312
238
-
Asn
GTT
[SRA]
>SRA1036954
SRR035090.45625
454 Sequencing (SRP001811)
47
121
+
Asn
GTT
[SRA]
>SRA1036989
SRR035090.53552
454 Sequencing (SRP001811)
356
282
-
Asn
GTT
[SRA]
>SRA1037009
SRR035090.58406
454 Sequencing (SRP001811)
46
120
+
Asn
GTT
[SRA]
>SRA1037223
SRR035090.95716
454 Sequencing (SRP001811)
357
283
-
Asn
GTT
[SRA]
>SRA1037372
SRR035090.124230
454 Sequencing (SRP001811)
121
47
-
Asn
GTT
[SRA]
>SRA1037405
SRR035090.129379
454 Sequencing (SRP001811)
355
281
-
Asn
GTT
[SRA]
>SRA1037425
SRR035090.134388
454 Sequencing (SRP001811)
358
284
-
Asn
GTT
[SRA]
>SRA1037521
SRR035090.146689
454 Sequencing (SRP001811)
357
283
-
Asn
GTT
[SRA]
>SRA1037565
SRR035090.155551
454 Sequencing (SRP001811)
176
250
+
Asn
GTT
[SRA]
>SRA1037700
SRR035090.175913
454 Sequencing (SRP001811)
365
291
-
Asn
GTT
[SRA]
>SRA1037859
SRR035090.206073
454 Sequencing (SRP001811)
347
421
+
Asn
GTT
[SRA]
>SRA1037929
SRR035090.220777
454 Sequencing (SRP001811)
18
92
+
Asn
GTT
[SRA]
>SRA1038098
SRR035090.244899
454 Sequencing (SRP001811)
270
196
-
Asn
GTT
[SRA]
>SRA1038132
SRR035090.250130
454 Sequencing (SRP001811)
130
204
+
Asn
GTT
[SRA]
>SRA1038133
SRR035090.251686
454 Sequencing (SRP001811)
411
337
-
Asn
GTT
[SRA]
>SRA1038142
SRR035090.253616
454 Sequencing (SRP001811)
204
278
+
Asn
GTT
[SRA]
>SRA1038190
SRR035090.261513
454 Sequencing (SRP001811)
88
162
+
Asn
GTT
[SRA]
>SRA1038221
SRR035090.266999
454 Sequencing (SRP001811)
357
283
-
Asn
GTT
[SRA]
>SRA1038629
SRR035090.339159
454 Sequencing (SRP001811)
201
127
-
Asn
GTT
[SRA]
>SRA1038791
SRR035090.367242
454 Sequencing (SRP001811)
69
143
+
Asn
GTT
[SRA]
>SRA1038941
SRR035090.397944
454 Sequencing (SRP001811)
214
288
+
Asn
GTT
[SRA]
>SRA1039111
SRR035090.427840
454 Sequencing (SRP001811)
264
338
+
Asn
GTT
[SRA]
>SRA1039113
SRR035090.428117
454 Sequencing (SRP001811)
350
423
+
Asn
GTT
[SRA]
>SRA1039146
SRR035090.432293
454 Sequencing (SRP001811)
117
191
+
Asn
GTT
[SRA]
>SRA1039270
SRR035090.455239
454 Sequencing (SRP001811)
281
207
-
Asn
GTT
[SRA]
>SRA1039330
SRR035090.467964
454 Sequencing (SRP001811)
174
248
+
Asn
GTT
[SRA]
>SRA1039395
SRR035090.483060
454 Sequencing (SRP001811)
390
316
-
Asn
GTT
[SRA]
>SRA1039437
SRR035090.491654
454 Sequencing (SRP001811)
175
249
+
Asn
GTT
[SRA]
>SRA1039538
SRR035090.511173
454 Sequencing (SRP001811)
156
230
+
Asn
GTT
[SRA]
>SRA1039687
SRR035090.544895
454 Sequencing (SRP001811)
363
289
-
Asn
GTT
[SRA]
>SRA1039698
SRR035090.547691
454 Sequencing (SRP001811)
179
253
+
Asn
GTT
[SRA]
>SRA1039874
SRR035090.588945
454 Sequencing (SRP001811)
361
287
-
Asn
GTT
[SRA]
>SRA1039890
SRR035090.593696
454 Sequencing (SRP001811)
229
155
-
Asn
GTT
[SRA]
>SRA1039941
SRR035090.609282
454 Sequencing (SRP001811)
344
418
+
Asn
GTT
[SRA]
>SRA1044535
SRR035092.295664
454 Sequencing (SRP001813)
202
128
-
Asn
GTT
[SRA]
>SRA1046221
SRR035093.255893
454 Sequencing (SRP001814)
350
276
-
Asn
GTT
[SRA]
>SRA1047303
SRR035093.506007
454 Sequencing (SRP001814)
75
149
+
Asn
GTT
[SRA]
>SRA1047351
SRR035093.519163
454 Sequencing (SRP001814)
51
125
+
Asn
GTT
[SRA]
>SRA1047712
SRR035094.27286
454 Sequencing (SRP001815)
197
123
-
Asn
GTT
[SRA]
>SRA1053983
SRR035099.25748
454 Sequencing (SRP001820)
185
259
+
Asn
GTT
[SRA]
>SRA1054337
SRR035099.108459
454 Sequencing (SRP001820)
193
119
-
Asn
GTT
[SRA]
>SRA1054400
SRR035099.125066
454 Sequencing (SRP001820)
81
155
+
Asn
GTT
[SRA]
>SRA1054455
SRR035099.135550
454 Sequencing (SRP001820)
67
141
+
Asn
GTT
[SRA]
>SRA1054507
SRR035099.148885
454 Sequencing (SRP001820)
302
376
+
Asn
GTT
[SRA]
>SRA1054553
SRR035099.161115
454 Sequencing (SRP001820)
168
242
+
Asn
GTT
[SRA]
>SRA1054557
SRR035099.162508
454 Sequencing (SRP001820)
390
316
-
Asn
GTT
[SRA]
Identical group No.672538 (5 seq.)
>WENV170622847
FUWD013123497
[FUWD] metagenome; unknown
488
562
+
Asn
GTT
[ENA]
¢þ
>WENV170631065
FUWD013337048
[FUWD] metagenome; unknown
488
562
+
Asn
GTT
[ENA]
¢þ
>SRA1031209
SRR035087.391301
454 Sequencing (SRP001808)
80
154
+
Asn
GTT
[SRA]
>SRA1043878
SRR035092.189531
454 Sequencing (SRP001813)
272
198
-
Asn
GTT
[SRA]
>SRA1054330
SRR035099.108094
454 Sequencing (SRP001820)
330
256
-
Asn
GTT
[SRA]
Identical group No.686064 (1 seq.)
>SRA1054373
SRR035099.118421
454 Sequencing (SRP001820)
93
21
-
Asn
GTT
[SRA]
Identical group No.686081 (1 seq.)
>SRA1054717
SRR035099.194348
454 Sequencing (SRP001820)
333
407
+
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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