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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001820)
Anticodon = TCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.825 (6 seq.)
>WENV170601722
FUWD010190226
[FUWD] metagenome; unknown
449
546
+
SeC
TCA
[ENA]
¢þ
>SRA1033299
SRR035088.219529
454 Sequencing (SRP001809)
437
534
+
SeC
TCA
[SRA]
>SRA1053940
SRR035099.9988
454 Sequencing (SRP001820)
198
101
-
SeC
TCA
[SRA]
>SRA1054154
SRR035099.70300
454 Sequencing (SRP001820)
161
64
-
SeC
TCA
[SRA]
>SRA1054234
SRR035099.90024
454 Sequencing (SRP001820)
161
64
-
SeC
TCA
[SRA]
>SRA1054378
SRR035099.118832
454 Sequencing (SRP001820)
379
282
-
SeC
TCA
[SRA]
Identical group No.826 (4 seq.)
>WENV170612939
FUWD012757582
[FUWD] metagenome; unknown
90
187
+
SeC(p)
TCA
[ENA]
¢þ
>SRA1053993
SRR035099.27265
454 Sequencing (SRP001820)
197
294
+
SeC
TCA
[SRA]
>SRA1054024
SRR035099.36586
454 Sequencing (SRP001820)
406
309
-
SeC
TCA
[SRA]
>W1710606632
FWXY01000012
Thermodesulfobacteriota
Desulfocicer vacuolatum DSM 3385 [FWXY]
42623
42720
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.2053 (2 seq.)
>SRA1054120
SRR035099.64022
454 Sequencing (SRP001820)
327
231
-
SeC
TCA
[SRA]
>SRA1054545
SRR035099.158981
454 Sequencing (SRP001820)
327
231
-
SeC
TCA
[SRA]
Identical group No.321170 (1 seq.)
>SRA1054155
SRR035099.70844
454 Sequencing (SRP001820)
365
292
-
SeC
TCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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