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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001820)
Anticodon = TCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300381 (5 seq.)
>WENV170611990
FUWD012477242
[FUWD] metagenome; unknown
346
270
-
Arg
TCG
[ENA]
¢þ
>SRA1029649
SRR035087.156412
454 Sequencing (SRP001808)
347
271
-
Arg
TCG
[SRA]
>SRA1038681
SRR035090.348529
454 Sequencing (SRP001811)
424
500
+
Arg
TCG
[SRA]
>SRA1054624
SRR035099.176459
454 Sequencing (SRP001820)
130
206
+
Arg
TCG
[SRA]
>SRA1054730
SRR035099.199477
454 Sequencing (SRP001820)
110
34
-
Arg
TCG
[SRA]
Identical group No.300786 (4 seq.)
>WENV170612959
FUWD012765671
[FUWD] metagenome; unknown
172
96
-
Arg
TCG
[ENA]
¢þ
>SRA1019275
SRR035082.427384
454 Sequencing (SRP001803)
100
176
+
Arg
TCG
[SRA]
>SRA1032166
SRR035087.567511
454 Sequencing (SRP001808)
115
39
-
Arg
TCG
[SRA]
>SRA1054615
SRR035099.173681
454 Sequencing (SRP001820)
182
106
-
Arg
TCG
[SRA]
Identical group No.321229 (10 seq.)
>WENV170620212
FUWD013027450
[FUWD] metagenome; unknown
7278
7202
-
Arg
TCG
[ENA]
¢þ
>WENV170628348
FUWD013245228
[FUWD] metagenome; unknown
7278
7202
-
Arg
TCG
[ENA]
¢þ
>SRA1032630
SRR035088.66998
454 Sequencing (SRP001809)
192
116
-
Arg
TCG
[SRA]
>SRA1033579
SRR035088.293243
454 Sequencing (SRP001809)
183
107
-
Arg
TCG
[SRA]
>SRA1040507
SRR035091.107240
454 Sequencing (SRP001812)
307
383
+
Arg
TCG
[SRA]
>SRA1040583
SRR035091.118691
454 Sequencing (SRP001812)
28
104
+
Arg
TCG
[SRA]
>SRA1040670
SRR035091.130488
454 Sequencing (SRP001812)
253
177
-
Arg
TCG
[SRA]
>SRA1041637
SRR035091.272435
454 Sequencing (SRP001812)
219
143
-
Arg
TCG
[SRA]
>SRA1050365
SRR035095.244956
454 Sequencing (SRP001816)
99
175
+
Arg
TCG
[SRA]
>SRA1054808
SRR035099.218877
454 Sequencing (SRP001820)
493
417
-
Arg
TCG
[SRA]
Identical group No.507048 (2 seq.)
>SRA1054629
SRR035099.178198
454 Sequencing (SRP001820)
204
129
-
Arg
TCG
[SRA]
>SRA1054723
SRR035099.195956
454 Sequencing (SRP001820)
204
129
-
Arg
TCG
[SRA]
Identical group No.686050 (1 seq.)
>SRA1054085
SRR035099.53329
454 Sequencing (SRP001820)
158
84
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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