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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001820)
Anticodon = TGA
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.14309 (1 seq.)
>SRA1054333
SRR035099.108232
454 Sequencing (SRP001820)
342
250
-
Ser
TGA
[SRA]
Identical group No.22548 (1 seq.)
>SRA1053959
SRR035099.16782
454 Sequencing (SRP001820)
117
207
+
Ser
TGA
[SRA]
Identical group No.34528 (1 seq.)
>SRA1054727
SRR035099.198811
454 Sequencing (SRP001820)
235
325
+
Ser
TGA
[SRA]
Identical group No.52747 (1 seq.)
>SRA1054427
SRR035099.131535
454 Sequencing (SRP001820)
118
31
-
Ser
TGA
[SRA]
Identical group No.52748 (1 seq.)
>SRA1054483
SRR035099.143410
454 Sequencing (SRP001820)
26
113
+
Ser
TGA
[SRA]
Identical group No.52752 (1 seq.)
>SRA1054711
SRR035099.192882
454 Sequencing (SRP001820)
348
260
-
Ser
TGA
[SRA]
Identical group No.93367 (14 seq.)
>W141227697
BALJ01000006
Bacteroidota
Prolixibacter bellariivorans JCM 13498 [BALJ]
79677
79762
+
Ser
TGA
[ENA]
¡û
>W141227745
BALK01000014
Bacteroidota
Marinilabilia salmonicolor JCM 21150 [BALK]
83097
83182
+
Ser
TGA
[ENA]
¡û
>WENV183704307
PDWI01000149
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
92032
91947
-
Ser
TGA
[ENA]
¢þ
>WENV183718649
PDWJ01005607
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3904
3819
-
Ser
TGA
[ENA]
¢þ
>WENV170112418
CEGE01007139
[CEGE] microbial mat metagenome; grass silage
2046
1959
-
Ser
TGA
[ENA]
¢þ
>W141560417
JHXO01000011
Bacteroidota
Prolixibacter bellariivorans ATCC BAA-1284 [JHXO]
161868
161953
+
Ser
TGA
[ENA]
¡û
>W1810365036
PVTS01000006
Bacteroidota
Marinilabilia salmonicolor MSL42 [PVTS]
92057
92142
+
Ser
TGA
[ENA]
¡û
>W1810400461
PYGC01000009
Bacteroidota
Prolixibacter denitrificans DSM 27267 [PYGC]
3376
3289
-
Ser
TGA
[ENA]
¡û
>W1810758846
QPIZ01000004
Bacteroidota
Marinilabilia salmonicolor 160A [QPIZ]
85264
85349
+
Ser
TGA
[ENA]
¡û
>C151024041
CP007451
Bacteroidota
Draconibacterium orientale FH5 [CP007451]
294728
294641
-
Ser
TGA
[Ensembl]
¡û
>SRA1054354
SRR035099.114867
454 Sequencing (SRP001820)
480
395
-
Ser
TGA
[SRA]
>W1511346364
JRHC01000001
Bacteroidota
Draconibacterium sediminis JN14CK-3 [JRHC]
2266622
2266709
+
Ser
TGA
[ENA]
¡û
>W121063269
AJKI01000001
Bacteroidota
Marinilabilia salmonicolor JCM 21150 [AJKI]
112558
112473
-
Ser
TGA
[ENA]
¡û
>W1710553598
FOHT01000006
Bacteroidota
Draconibacterium orientale [FOHT]
141157
141244
+
Ser
TGA
[ENA]
¡û
Identical group No.93368 (2 seq.)
>WENV170612953
FUWD012762375
[FUWD] metagenome; unknown
199
112
-
Ser
TGA
[ENA]
¢þ
>SRA1054504
SRR035099.148292
454 Sequencing (SRP001820)
141
228
+
Ser
TGA
[SRA]
Identical group No.93369 (1 seq.)
>SRA1054762
SRR035099.208234
454 Sequencing (SRP001820)
235
319
+
Ser
TGA
[SRA]
Identical group No.153853 (77 seq.)
>C005323
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
570415
570333
-
Ser
TGA
[Ensembl]
¡û
>C018270
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1190073
1189991
-
Ser
TGA
[Ensembl]
¡û
>WENV170613664
FUWD012815692
[FUWD] metagenome; unknown
1122
1205
+
Ser
TGA
[ENA]
¢þ
>W09103366
AAJD01000012
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
2592
2509
-
Ser
TGA
[ENA]
¡û
>SRA1018543
SRR035082.307913
454 Sequencing (SRP001803)
111
28
-
Ser
TGA
[SRA]
>SRA1020077
SRR035083.54387
454 Sequencing (SRP001804)
93
10
-
Ser
TGA
[SRA]
>SRA1020315
SRR035083.95829
454 Sequencing (SRP001804)
42
125
+
Ser
TGA
[SRA]
>SRA1020333
SRR035083.98303
454 Sequencing (SRP001804)
208
125
-
Ser
TGA
[SRA]
>SRA1020420
SRR035083.112053
454 Sequencing (SRP001804)
91
8
-
Ser
TGA
[SRA]
>SRA1020511
SRR035083.127693
454 Sequencing (SRP001804)
206
123
-
Ser
TGA
[SRA]
>SRA1020618
SRR035083.141439
454 Sequencing (SRP001804)
42
125
+
Ser
TGA
[SRA]
>SRA1020676
SRR035083.151027
454 Sequencing (SRP001804)
113
196
+
Ser
TGA
[SRA]
>SRA1020731
SRR035083.156910
454 Sequencing (SRP001804)
260
343
+
Ser
TGA
[SRA]
>SRA1021004
SRR035083.196152
454 Sequencing (SRP001804)
246
329
+
Ser
TGA
[SRA]
>SRA1021133
SRR035083.213223
454 Sequencing (SRP001804)
170
253
+
Ser
TGA
[SRA]
>SRA1021195
SRR035083.222248
454 Sequencing (SRP001804)
43
126
+
Ser
TGA
[SRA]
>SRA1021243
SRR035083.227941
454 Sequencing (SRP001804)
239
156
-
Ser
TGA
[SRA]
>SRA1021245
SRR035083.228190
454 Sequencing (SRP001804)
92
175
+
Ser
TGA
[SRA]
>SRA1021287
SRR035083.237016
454 Sequencing (SRP001804)
239
156
-
Ser
TGA
[SRA]
>SRA1021498
SRR035083.266198
454 Sequencing (SRP001804)
206
123
-
Ser
TGA
[SRA]
>SRA1021580
SRR035083.275748
454 Sequencing (SRP001804)
371
454
+
Ser
TGA
[SRA]
>SRA1021664
SRR035083.290010
454 Sequencing (SRP001804)
136
53
-
Ser
TGA
[SRA]
>SRA1021811
SRR035083.312690
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1021853
SRR035083.317812
454 Sequencing (SRP001804)
124
41
-
Ser
TGA
[SRA]
>SRA1021885
SRR035083.324145
454 Sequencing (SRP001804)
104
187
+
Ser
TGA
[SRA]
>SRA1021935
SRR035083.329251
454 Sequencing (SRP001804)
135
218
+
Ser
TGA
[SRA]
>SRA1021953
SRR035083.331676
454 Sequencing (SRP001804)
239
156
-
Ser
TGA
[SRA]
>SRA1022037
SRR035083.342775
454 Sequencing (SRP001804)
115
32
-
Ser
TGA
[SRA]
>SRA1022083
SRR035083.349811
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022184
SRR035083.365110
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022230
SRR035083.371262
454 Sequencing (SRP001804)
41
124
+
Ser
TGA
[SRA]
>SRA1022247
SRR035083.374137
454 Sequencing (SRP001804)
155
72
-
Ser
TGA
[SRA]
>SRA1022321
SRR035083.389183
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022504
SRR035083.415272
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022507
SRR035083.415663
454 Sequencing (SRP001804)
124
41
-
Ser
TGA
[SRA]
>SRA1022531
SRR035083.421688
454 Sequencing (SRP001804)
36
119
+
Ser
TGA
[SRA]
>SRA1022563
SRR035083.424735
454 Sequencing (SRP001804)
79
162
+
Ser
TGA
[SRA]
>SRA1022589
SRR035083.429299
454 Sequencing (SRP001804)
128
45
-
Ser
TGA
[SRA]
>SRA1022791
SRR035083.461356
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022867
SRR035083.476091
454 Sequencing (SRP001804)
173
256
+
Ser
TGA
[SRA]
>SRA1022892
SRR035083.480011
454 Sequencing (SRP001804)
36
119
+
Ser
TGA
[SRA]
>SRA1022944
SRR035083.492741
454 Sequencing (SRP001804)
72
155
+
Ser
TGA
[SRA]
>SRA1022973
SRR035083.498861
454 Sequencing (SRP001804)
127
44
-
Ser
TGA
[SRA]
>SRA1026023
SRR035085.128543
454 Sequencing (SRP001806)
163
80
-
Ser
TGA
[SRA]
>SRA1028909
SRR035087.36046
454 Sequencing (SRP001808)
93
10
-
Ser
TGA
[SRA]
>SRA1029881
SRR035087.195688
454 Sequencing (SRP001808)
94
11
-
Ser
TGA
[SRA]
>SRA1031977
SRR035087.524255
454 Sequencing (SRP001808)
356
273
-
Ser
TGA
[SRA]
>SRA1033692
SRR035088.326312
454 Sequencing (SRP001809)
119
202
+
Ser
TGA
[SRA]
>SRA1033916
SRR035088.405934
454 Sequencing (SRP001809)
197
280
+
Ser
TGA
[SRA]
>SRA1035845
SRR035089.387519
454 Sequencing (SRP001810)
395
478
+
Ser
TGA
[SRA]
>SRA1036833
SRR035090.20100
454 Sequencing (SRP001811)
72
155
+
Ser
TGA
[SRA]
>SRA1036871
SRR035090.29678
454 Sequencing (SRP001811)
414
497
+
Ser
TGA
[SRA]
>SRA1037178
SRR035090.88136
454 Sequencing (SRP001811)
61
144
+
Ser
TGA
[SRA]
>SRA1037469
SRR035090.138329
454 Sequencing (SRP001811)
75
158
+
Ser
TGA
[SRA]
>SRA1037492
SRR035090.142333
454 Sequencing (SRP001811)
422
505
+
Ser
TGA
[SRA]
>SRA1037640
SRR035090.166947
454 Sequencing (SRP001811)
69
152
+
Ser
TGA
[SRA]
>SRA1037652
SRR035090.169756
454 Sequencing (SRP001811)
69
152
+
Ser
TGA
[SRA]
>SRA1037815
SRR035090.200872
454 Sequencing (SRP001811)
244
161
-
Ser
TGA
[SRA]
>SRA1038053
SRR035090.239510
454 Sequencing (SRP001811)
71
154
+
Ser
TGA
[SRA]
>SRA1038060
SRR035090.240978
454 Sequencing (SRP001811)
125
42
-
Ser
TGA
[SRA]
>SRA1038213
SRR035090.266097
454 Sequencing (SRP001811)
156
73
-
Ser
TGA
[SRA]
>SRA1038258
SRR035090.275257
454 Sequencing (SRP001811)
147
64
-
Ser
TGA
[SRA]
>SRA1038477
SRR035090.313059
454 Sequencing (SRP001811)
312
395
+
Ser
TGA
[SRA]
>SRA1038596
SRR035090.333358
454 Sequencing (SRP001811)
69
152
+
Ser
TGA
[SRA]
>SRA1038802
SRR035090.369478
454 Sequencing (SRP001811)
291
374
+
Ser
TGA
[SRA]
>SRA1038808
SRR035090.370924
454 Sequencing (SRP001811)
170
253
+
Ser
TGA
[SRA]
>SRA1038858
SRR035090.381487
454 Sequencing (SRP001811)
170
253
+
Ser
TGA
[SRA]
>SRA1038898
SRR035090.390712
454 Sequencing (SRP001811)
55
138
+
Ser
TGA
[SRA]
>SRA1039449
SRR035090.494821
454 Sequencing (SRP001811)
40
123
+
Ser
TGA
[SRA]
>SRA1039456
SRR035090.496129
454 Sequencing (SRP001811)
61
144
+
Ser
TGA
[SRA]
>SRA1039519
SRR035090.507904
454 Sequencing (SRP001811)
10
93
+
Ser
TGA
[SRA]
>SRA1039786
SRR035090.568998
454 Sequencing (SRP001811)
350
433
+
Ser
TGA
[SRA]
>SRA1045644
SRR035093.140663
454 Sequencing (SRP001814)
150
67
-
Ser
TGA
[SRA]
>SRA1050563
SRR035095.293448
454 Sequencing (SRP001816)
193
276
+
Ser
TGA
[SRA]
>SRA1054167
SRR035099.74429
454 Sequencing (SRP001820)
423
340
-
Ser
TGA
[SRA]
>SRA1054198
SRR035099.81380
454 Sequencing (SRP001820)
423
340
-
Ser
TGA
[SRA]
>SRA1054236
SRR035099.90380
454 Sequencing (SRP001820)
152
69
-
Ser
TGA
[SRA]
Identical group No.160442 (1 seq.)
>SRA1054309
SRR035099.103887
454 Sequencing (SRP001820)
58
143
+
Ser
TGA
[SRA]
Identical group No.229631 (1 seq.)
>SRA1054513
SRR035099.150268
454 Sequencing (SRP001820)
530
451
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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