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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = ACG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270374 (14 seq.)
>W1711628708
MPOJ01000010
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
137984
138060
+
Arg
ACG
[ENA]
¡û
>W1711628776
MPOK01000077
Nitrospirota
Leptospirillum ferriphilum [MPOK]
9778
9702
-
Arg
ACG
[ENA]
¡û
>W141000192
AADL01002505
Unclassified
mine drainage metagenome Group III [AADL]
41774
41698
-
Arg
ACG
[ENA]
¡û
>W09106641
AAWO01000057
Unclassified
mine drainage metagenome rubarum [AAWO]
34094
34018
-
Arg
ACG
[ENA]
¡û
>W141803136
JPGK01000001
Nitrospirota
Leptospirillum ferriphilum [JPGK]
347224
347300
+
Arg
ACG
[ENA]
¡û
>W1911494715
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1827962
1828038
+
Arg
ACG
[ENA]
¡û
>C151019619
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
393700
393776
+
Arg
ACG
[Ensembl]
¡û
>C151091649
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
517507
517583
+
Arg
ACG
[Ensembl]
¡û
>ENV09002099
ACXJ01009633
Mine drainage metagenome Contig1
503
579
+
Arg
ACG
[ENA]
¡û
>W1511705746
LGSH01000039
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
46365
46289
-
Arg
ACG
[ENA]
¡û
>W121055923
AIJM01000084
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
2557
2481
-
Arg
ACG
[ENA]
¡û
>C131001605
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
408504
408580
+
Arg
ACG
[Ensembl]
¡û
>WENV076977
AADL01000017
Acid Mine Drainage microbial communities from Richmond mine
6283
6205
-
Arg
ACG
[ENA]
>WENV080258
AAWO01000057
Acid Mine Drainage microbial communities from Richmond mine
34095
34017
-
Arg
ACG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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