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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CAA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91056 (7 seq.)
>A171003632
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1402911
1402827
-
Leu
CAA
-
¡û
>A171006636
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
377112
377027
-
Leu
CAA
-
¡û
>W141000055
AADL01001151
Unclassified
mine drainage metagenome Group III [AADL]
715
628
-
Leu
CAA
[ENA]
¡û
>W141000069
AADL01001483
Unclassified
mine drainage metagenome Group III [AADL]
63562
63646
+
Leu
CAA
[ENA]
¡û
>W1610000078
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
58793
58706
-
Leu
CAA
[ENA]
¡û
>WENV077063
AADL01001151
Acid Mine Drainage microbial communities from Richmond mine
715
628
-
Leu
CAA
[ENA]
>WENV077077
AADL01001483
Acid Mine Drainage microbial communities from Richmond mine
63562
63649
+
Leu
CAA
[ENA]
Identical group No.91062 (4 seq.)
>A171007735
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
843999
844083
+
Leu
CAA
-
¡û
>A171007772
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
846458
846542
+
Leu
CAA
-
¡û
>W141000103
AADL01001626
Unclassified
mine drainage metagenome Group III [AADL]
1550
1634
+
Leu
CAA
[ENA]
¡û
>WENV077111
AADL01001626
Acid Mine Drainage microbial communities from Richmond mine
1550
1637
+
Leu
CAA
[ENA]
Identical group No.91064 (3 seq.)
>W141000159
AADL01002397
Unclassified
mine drainage metagenome Group III [AADL]
103
19
-
Leu
CAA
[ENA]
¡û
>ENV09002234
ACXJ01011390
Mine drainage metagenome Contig1
10803
10887
+
Leu
CAA
[ENA]
¡û
>WENV077167
AADL01002397
Acid Mine Drainage microbial communities from Richmond mine
103
16
-
Leu
CAA
[ENA]
Identical group No.112233 (9 seq.)
>W141000030
AADL01000737
Unclassified
mine drainage metagenome Group III [AADL]
768
854
+
Leu
CAA
[ENA]
¡û
>W141000189
AADL01002505
Unclassified
mine drainage metagenome Group III [AADL]
148692
148778
+
Leu
CAA
[ENA]
¡û
>W09106643
AAWO01000058
Unclassified
mine drainage metagenome rubarum [AAWO]
97424
97510
+
Leu
CAA
[ENA]
¡û
>W141803138
JPGK01000001
Nitrospirota
Leptospirillum ferriphilum [JPGK]
245208
245122
-
Leu
CAA
[ENA]
¡û
>W1911494727
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1725945
1725859
-
Leu
CAA
[ENA]
¡û
>C151091686
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
336680
336594
-
Leu
CAA
[Ensembl]
¡û
>W121055889
AIJM01000008
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
77084
77170
+
Leu
CAA
[ENA]
¡û
>WENV077038
AADL01000737
Acid Mine Drainage microbial communities from Richmond mine
768
854
+
Leu
CAA
[ENA]
>WENV080262
AAWO01000058
Acid Mine Drainage microbial communities from Richmond mine
97424
97510
+
Leu
CAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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