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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CAC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488098 (7 seq.)
>A171003622
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
696110
696182
+
Val
CAC
-
¡û
>A171006626
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1555346
1555418
+
Val
CAC
-
¡û
>W141000044
AADL01001076
Unclassified
mine drainage metagenome Group III [AADL]
1745
1673
-
Val
CAC
[ENA]
¡û
>W141000075
AADL01001500
Unclassified
mine drainage metagenome Group III [AADL]
41702
41630
-
Val
CAC
[ENA]
¡û
>W1610000065
AABC05000010
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
655
727
+
Val
CAC
[ENA]
¡û
>WENV077052
AADL01001076
Acid Mine Drainage microbial communities from Richmond mine
1745
1670
-
Val
CAC
[ENA]
>WENV077083
AADL01001500
Acid Mine Drainage microbial communities from Richmond mine
41702
41627
-
Val
CAC
[ENA]
Identical group No.488115 (5 seq.)
>A171007757
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
651208
651134
-
Val
CAC
-
¡û
>A171007794
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
649817
649744
-
Val
CAC
-
¡û
>W141000144
AADL01002062
Unclassified
mine drainage metagenome Group III [AADL]
2013
2085
+
Val
CAC
[ENA]
¡û
>ENV09002237
ACXJ01011395
Mine drainage metagenome Contig1
11691
11619
-
Val
CAC
[ENA]
¡û
>WENV077152
AADL01002062
Acid Mine Drainage microbial communities from Richmond mine
2013
2088
+
Val
CAC
[ENA]
Identical group No.653328 (12 seq.)
>W1711628723
MPOJ01000017
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
173441
173367
-
Val
CAC
[ENA]
¡û
>W1711628749
MPOK01000006
Nitrospirota
Leptospirillum ferriphilum [MPOK]
9746
9672
-
Val
CAC
[ENA]
¡û
>W141000200
AADL01002511
Unclassified
mine drainage metagenome Group III [AADL]
32816
32890
+
Val
CAC
[ENA]
¡û
>W09106653
AAWO01000067
Unclassified
mine drainage metagenome rubarum [AAWO]
29184
29258
+
Val
CAC
[ENA]
¡û
>W141803143
JPGK01000002
Nitrospirota
Leptospirillum ferriphilum [JPGK]
263840
263766
-
Val
CAC
[ENA]
¡û
>W1911494731
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1400674
1400600
-
Val
CAC
[ENA]
¡û
>C151019634
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
2269025
2268951
-
Val
CAC
[Ensembl]
¡û
>C151091669
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
2640639
2640565
-
Val
CAC
[Ensembl]
¡û
>W1511705755
LGSH01000048
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
53725
53799
+
Val
CAC
[ENA]
¡û
>W121055887
AIJM01000007
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
28501
28575
+
Val
CAC
[ENA]
¡û
>WENV076973
AADL01000012
Acid Mine Drainage microbial communities from Richmond mine
2313
2239
-
Val
CAC
[ENA]
>WENV080270
AAWO01000067
Acid Mine Drainage microbial communities from Richmond mine
29184
29258
+
Val
CAC
[ENA]
Identical group No.674639 (9 seq.)
>W141000002
AADL01000192
Unclassified
mine drainage metagenome Group III [AADL]
838
764
-
Val
CAC
[ENA]
¡û
>W141085056
AURA01000151
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
2973
3047
+
Val
CAC
[ENA]
¡û
>WENV170013413
AUZX01003338
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
102
176
+
Val
CAC
[ENA]
¢þ
>W09132215
ACNP01000061
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
11829
11903
+
Val
CAC
[ENA]
¡û
>W09132216
ACNP01000062
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
490
564
+
Val
CAC
[ENA]
¡û
>ENV09002079
ACXJ01009012
Mine drainage metagenome Contig1
2972
3046
+
Val
CAC
[ENA]
¡û
>C121001317
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
2450112
2450038
-
Val
CAC
[Ensembl]
¡û
>C131001621
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
2344587
2344513
-
Val
CAC
[Ensembl]
¡û
>WENV077010
AADL01000192
Acid Mine Drainage microbial communities from Richmond mine
838
764
-
Val
CAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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