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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CAG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91057 (5 seq.)
>A171003633
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1367831
1367747
-
Leu
CAG
-
¡û
>A171006637
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
363749
363665
-
Leu
CAG
-
¡û
>W141000067
AADL01001450
Unclassified
mine drainage metagenome Group III [AADL]
1489
1405
-
Leu
CAG
[ENA]
¡û
>W1610000079
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
23713
23629
-
Leu
CAG
[ENA]
¡û
>WENV077075
AADL01001450
Acid Mine Drainage microbial communities from Richmond mine
1489
1402
-
Leu
CAG
[ENA]
Identical group No.91058 (6 seq.)
>W141000070
AADL01001483
Unclassified
mine drainage metagenome Group III [AADL]
84412
84497
+
Leu
CAG
[ENA]
¡û
>W141000092
AADL01001530
Unclassified
mine drainage metagenome Group III [AADL]
16293
16208
-
Leu
CAG
[ENA]
¡û
>W141000135
AADL01001902
Unclassified
mine drainage metagenome Group III [AADL]
2717
2633
-
Leu
CAG
[ENA]
¡û
>WENV077078
AADL01001483
Acid Mine Drainage microbial communities from Richmond mine
84412
84499
+
Leu
CAG
[ENA]
>WENV077100
AADL01001530
Acid Mine Drainage microbial communities from Richmond mine
16293
16206
-
Leu
CAG
[ENA]
>WENV077143
AADL01001902
Acid Mine Drainage microbial communities from Richmond mine
2717
2630
-
Leu
CAG
[ENA]
Identical group No.91063 (5 seq.)
>A171007736
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
854914
855001
+
Leu
CAG
-
¡û
>A171007773
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
857374
857461
+
Leu
CAG
-
¡û
>W141000104
AADL01001629
Unclassified
mine drainage metagenome Group III [AADL]
3194
3281
+
Leu
CAG
[ENA]
¡û
>ENV09002213
ACXJ01011263
Mine drainage metagenome Contig1
7687
7600
-
Leu
CAG
[ENA]
¡û
>WENV077112
AADL01001629
Acid Mine Drainage microbial communities from Richmond mine
3194
3283
+
Leu
CAG
[ENA]
Identical group No.153680 (13 seq.)
>W1711628711
MPOJ01000010
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
245676
245591
-
Leu
CAG
[ENA]
¡û
>W1711628754
MPOK01000011
Nitrospirota
Leptospirillum ferriphilum [MPOK]
787
702
-
Leu
CAG
[ENA]
¡û
>W141085061
AURA01000328
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
1411
1326
-
Leu
CAG
[ENA]
¡û
>W09106624
AAWO01000006
Unclassified
mine drainage metagenome rubarum [AAWO]
39716
39801
+
Leu
CAG
[ENA]
¡û
>W09132207
ACNP01000048
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
8676
8761
+
Leu
CAG
[ENA]
¡û
>C151019653
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
486435
486350
-
Leu
CAG
[Ensembl]
¡û
>C151091684
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
624720
624635
-
Leu
CAG
[Ensembl]
¡û
>ENV09002131
ACXJ01010284
Mine drainage metagenome Contig1
1368
1283
-
Leu
CAG
[ENA]
¡û
>ENV09002257
ACXJ01012153
Mine drainage metagenome Contig1
6144
6059
-
Leu
CAG
[ENA]
¡û
>W1511705742
LGSH01000036
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
4711
4796
+
Leu
CAG
[ENA]
¡û
>W121055907
AIJM01000053
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
38583
38668
+
Leu
CAG
[ENA]
¡û
>C131001640
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
520637
520552
-
Leu
CAG
[Ensembl]
¡û
>WENV080241
AAWO01000006
Acid Mine Drainage microbial communities from Richmond mine
39716
39801
+
Leu
CAG
[ENA]
Identical group No.158043 (4 seq.)
>W141000163
AADL01002460
Unclassified
mine drainage metagenome Group III [AADL]
32261
32176
-
Leu
CAG
[ENA]
¡û
>W141803150
JPGK01000003
Nitrospirota
Leptospirillum ferriphilum [JPGK]
60063
59978
-
Leu
CAG
[ENA]
¡û
>W1911494725
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1917618
1917533
-
Leu
CAG
[ENA]
¡û
>WENV076984
AADL01000033
Acid Mine Drainage microbial communities from Richmond mine
37479
37394
-
Leu
CAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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